Issues

• Input and export scipy.cluster.hierarchy lineage matrix format

  tskit-dev/tsconvert#64 · Filter by author hyanwong opened on May 16, 2025

• No nexus reading/writing

  tskit-dev/tsconvert#57 · Filter by author hyanwong opened on Sep 2, 2024

• Export to BGEN

  tskit-dev/tsconvert#56 · Filter by author hyanwong opened on Aug 25, 2024
  1

• Oxford phased haplotype file (.haps) + .sample export

  tskit-dev/tsconvert#55 · Filter by author hyanwong opened on Nov 28, 2023
  3

• Require semicolon for newick?

  tskit-dev/tsconvert#50 · Filter by author hyanwong opened on Jan 24, 2023
  2

• ARG conversion functionality

  tskit-dev/tsconvert#44 · Filter by author hyanwong opened on Nov 13, 2022

• Provenance recording

  enhancement
  tskit-dev/tsconvert#37 · Filter by author benjeffery opened on Apr 7, 2022 · Initial 0.1 release

• Importing large newick files

  tskit-dev/tsconvert#36 · Filter by author hyanwong opened on Mar 25, 2022
  21

• From sequence of newick trees?

  tskit-dev/tsconvert#35 · Filter by author swamidass opened on Nov 2, 2021
  1

• Add pandas and newick to install dependancies

  bug
  tskit-dev/tsconvert#33 · Filter by author benjeffery opened on Jul 22, 2021 · Initial 0.1 release

• from_ms: assign samples to populations

  tskit-dev/tsconvert#32 · Filter by author grahamgower opened on Jul 15, 2021
  6

• from_ms should do something useful with replicates

  enhancement
  tskit-dev/tsconvert#31 · Filter by author grahamgower opened on Jul 10, 2021 · Initial 0.1 release
  3

• from_ms raises dendropy.utility.error.UltrametricityError

  tskit-dev/tsconvert#30 · Filter by author grahamgower opened on Jul 10, 2021 · Initial 0.1 release
  6

• Standardise API

  tskit-dev/tsconvert#27 · Filter by author benjeffery opened on Jun 21, 2021 · Initial 0.1 release

• Set up docs

  tskit-dev/tsconvert#25 · Filter by author benjeffery opened on Jun 18, 2021 · Initial 0.1 release

• Add github actions tests

  tskit-dev/tsconvert#24 · Filter by author benjeffery opened on Jun 18, 2021 · Initial 0.1 release

• Modernise packaging

  tskit-dev/tsconvert#23 · Filter by author jeromekelleher opened on Jun 18, 2021 · Initial 0.1 release

• Add CLI functionality

  tskit-dev/tsconvert#20 · Filter by author benjeffery opened on Jun 16, 2021 · Initial 0.1 release

• ARGON conversion tests

  tskit-dev/tsconvert#19 · Filter by author gtsambos opened on Jun 16, 2021 · Initial 0.1 release
  1

  

• networkx.DiGraph import

  tskit-dev/tsconvert#12 · Filter by author winni2k opened on Jun 23, 2020
  2

• BEAST support

  tskit-dev/tsconvert#10 · Filter by author jeromekelleher opened on Apr 15, 2020