nucleic acid folding
Analyse Nucleic Acids Structure and Simulations with baRNAba
A lua package for designing DNA.
Julia interface to ViennaRNA for RNA structure prediction and analysis
Julia interface to the RNAstructure program suite for RNA structure prediction and analysis
Transformer + GAT for RNA chemical reactivity prediction| Stanford Ribonanza
Python implementation of Nussinov RNA folding algorithm and recursive backtrack.
Julia interface to LinearFold RNA structure prediction programs: LinearFold, LinearPartition, LinearSampling, and LinearTurboFold
RNA design tool that utilizes reinforcement learning
Nucleic acid secondary structure prediction and analysis
Coarse-grained molecular dynamics simulation with the Single-Interaction-Site RNA model
🧬 Zuker: An RNA secondary structure prediction algorithm
GPU-powered interactive gene neighborhood visualization with deck.gl and React
RAFFT: RNA structure and folding dynamics predictions using the fast Fourier transform
RNA/DNA/PMO Pseudoknotted Secondary Structure Interaction Prediction Using Relaxed Hierarchical Folding
RNA Pseudoknotted Secondary Structure Prediction Using Relaxed Hierarchical Folding
A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.
Faster algorithms for RNA-folding using the Four-Russians method
MFE method for predicting the psuedoknotted secondary structures of RNA sequences.
Explainable microRNA precursor triage. Paste a human DNA or RNA sequence or an hg38 locus, fold it with ViennaRNA in your browser, and get a ranked shortlist of pre-miRNA-like hairpins with the evidence behind every score.
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