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  1. BLAZE BLAZE Public

    SingleCell Nanopore sequencing data analysis

    Python 73 10

  2. NanoSplicer NanoSplicer Public

    Python 31 8

  3. mako mako Public

    Differential analysis of RNA modifications using Oxford Nanopore Technologies (ONT) direct RNA sequencing data

    Nextflow 3 2

  4. PALAVA PALAVA Public

    Python 2 1

  5. WaviFM WaviFM Public

    Wavelet-based variationally-inferred sparse factor model for spatial transcriptomics data

    C++ 2

  6. for-new-members for-new-members Public

    reading list for new members

Repositories

Showing 10 of 13 repositories
  • WaveFactor Public

    Prior-informed Bayesian factor model for spatial transcriptomics that accounts for multi-scale spatial information via 2D wavelet transforms

    shimlab/WaveFactor's past year of commit activity
    C++ 0 GPL-3.0 0 0 0 Updated Oct 13, 2026
  • PhyloJumps Public
    shimlab/PhyloJumps's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Oct 10, 2026
  • mako Public

    Differential analysis of RNA modifications using Oxford Nanopore Technologies (ONT) direct RNA sequencing data

    shimlab/mako's past year of commit activity
    Nextflow 3 2 0 0 Updated Oct 1, 2026
  • FlexiDeconv Public
    shimlab/FlexiDeconv's past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Sep 23, 2026
  • makoview Public
    shimlab/makoview's past year of commit activity
    JavaScript 0 0 0 0 Updated Sep 16, 2026
  • WaviFM Public

    Wavelet-based variationally-inferred sparse factor model for spatial transcriptomics data

    shimlab/WaviFM's past year of commit activity
    C++ 2 GPL-3.0 0 0 0 Updated Sep 9, 2026
  • BLAZE Public

    SingleCell Nanopore sequencing data analysis

    shimlab/BLAZE's past year of commit activity
    Python 73 GPL-3.0 10 6 1 Updated May 30, 2025
  • PALAVA Public
    shimlab/PALAVA's past year of commit activity
    Python 2 GPL-3.0 1 0 0 Updated May 9, 2025
  • NanoSplicer Public
    shimlab/NanoSplicer's past year of commit activity
    Python 31 GPL-3.0 8 8 0 Updated Nov 28, 2024
  • orfHMM Public
    shimlab/orfHMM's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 21, 2021
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