Repository navigation
LNG_CLOSED_TWIN_JOIN (default off): join a closed recycling copy to its one fed identity twin - #112
Closed
adamjohnwright wants to merge 1 commit into
Closed
adamjohnwright wants to merge 1 commit into
adamjohnwright wants to merge 1 commit into
Conversation
…ts one fed identity twin deltasignal specs/053 (registered before this code). A node fed only by its own release from a complex it was bound into is merged into the one node with the same nodes.csv identity that has another producer, so a perturbation of the protein reaches the cycle (traced: SPRED dimer:NF1 RAS GAP, unreachable from an NF1 knockout). Several fed twins: left alone and counted. Joined before any table is written; closed_twin_joins.csv records the joins (empty when off). node_rows() is factored out of export_nodes so the join uses the exported identity. Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
Contributor
Author
|
Measured in deltasignal specs/053 R1: not adopted (curator held-out −493, DSB −488). Left unmerged as the record; flag would expire under the specs/020 policy. |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
deltasignal specs/053, registered before this code (deltasignal commits d0a2808 + amendment 1 a807851).
A node fed only by its own release from a complex it was bound into (a closed recycling copy) is merged into the one node with the identical nodes.csv identity that has another producer. Traced case: the SPRED dimer:NF1 RAS GAP, which an NF1 knockout cannot reach today. Several fed twins → left alone and counted (merging all would be the silo bridge).
src/closed_twin_join.py:find_joins,apply_joins(pure).create_pathway_logic_network, before any table is written;closed_twin_joins.csvrecords joins (empty when off).node_rows()factored out ofexport_nodesso the join uses the exported identity.Draft until the deltasignal arm (
cjvscj0) is read against the registered gate.🤖 Generated with Claude Code