Issues

• ReactomeGSA analysis fails with HTTP 505 error

  reactome/ReactomeGSA#97 · Filter by author crazyxiaoj opened on Jul 23, 2026
  2

• Endless loop in perform_reactome_analysis

  reactome/ReactomeGSA#95 · Filter by author jan-joh opened on Jun 19, 2026

• Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘analyse_sc_clusters’ for signature ‘"missing"’

  reactome/ReactomeGSA#91 · Filter by author D201881403 opened on Mar 1, 2025

• Timeout was reached: [gsa.reactome.org] SSL/TLS connection timeout

  reactome/ReactomeGSA#89 · Filter by author cdkodira opened on Oct 15, 2024
  1

• R Client for Ribo Seq data

  reactome/ReactomeGSA#87 · Filter by author alexgrent opened on Sep 6, 2024
  

• How to solve this "sparse->dense coercion: allocating vector of size 17.3 GiB"

  reactome/ReactomeGSA#85 · Filter by author XjtuZhangKun-lab opened on Aug 30, 2024

• sparse->dense coercion: allocating vector of size 17.3 GiB

  reactome/ReactomeGSA#84 · Filter by author XjtuZhangKun-lab opened on Aug 30, 2024

• Add scRNA seq using pseudo bulk

  reactome/ReactomeGSA#81 · Filter by author alexgrent opened on Jun 24, 2024
  

• Prepare for upcoming Seurat v5 release

  reactome/ReactomeGSA#80 · Filter by author Gesmira opened on Oct 3, 2023

• ssGSEA FDR?

  reactome/ReactomeGSA#79 · Filter by author domi84 opened on Aug 10, 2023
  3

• plot_gsva_pathway label squished and how to assign specific color

  reactome/ReactomeGSA#78 · Filter by author camilla0801 opened on Jul 26, 2023
  1

• Create function for cluster-level pathway enrichment for scRNA-seq data

  enhancement
  reactome/ReactomeGSA#73 · Filter by author jgriss opened on Feb 22, 2023
  

• Add support for group-wise comparison of scRNA-seq data

  enhancement
  reactome/ReactomeGSA#67 · Filter by author jgriss opened on Oct 2, 2022

• Potential bug: Ensure that groups can also be integers

  bug
  reactome/ReactomeGSA#64 · Filter by author jgriss opened on Jul 21, 2022
  

• Add number of mapped genes in GSVA results

  enhancement
  reactome/ReactomeGSA#53 · Filter by author jgriss opened on Oct 27, 2021
  

• pathway hierarchy for annotating pathways

  enhancement
  reactome/ReactomeGSA#48 · Filter by author bravedu01 opened on Oct 18, 2021
  3

  

• Check that passed metadata fits expression values in add_dataset

  enhancement
  reactome/ReactomeGSA#43 · Filter by author jgriss opened on Sep 14, 2021
  

• Make mapping results (entities per pathway) available in R

  enhancement
  reactome/ReactomeGSA#23 · Filter by author jgriss opened on Jun 9, 2021
  

• Add group.by parameter to analyse_sc_clusters

  enhancement
  reactome/ReactomeGSA#12 · Filter by author jgriss opened on Aug 27, 2020 · 1.2.0
  

• Fix Reactome visualization for ssGSEA if size filter is applied

  bug
  reactome/ReactomeGSA#8 · Filter by author jgriss opened on Mar 21, 2020 · 1.2.0
  

• Add signature for add_dataset supporting a matrix

  enhancement
  reactome/ReactomeGSA#7 · Filter by author jgriss opened on Mar 21, 2020 · 1.2.0
  

• Add feature to get members of a specific pathway

  enhancement
  reactome/ReactomeGSA#6 · Filter by author jgriss opened on Mar 13, 2020 · 1.2.0
  

• Add function to highlight specific pathways in plots

  enhancement
  reactome/ReactomeGSA#5 · Filter by author jgriss opened on Mar 13, 2020 · 1.2.0
  

• Add support for long running analyses

  enhancement
  reactome/ReactomeGSA#4 · Filter by author jgriss opened on Mar 13, 2020 · 1.2.0