Issues

• codecov uploads in github actions failing with nonsense error message

  popsim-consortium/demes-python#613 · Filter by author grahamgower opened on Mar 29, 2026
  1

• replace flake8 and black with ruff?

  popsim-consortium/demes-python#593 · Filter by author grahamgower opened on Mar 18, 2026
  2

• CI fragility and supported Python versions

  popsim-consortium/demes-python#592 · Filter by author molpopgen opened on Mar 17, 2026
  1

• Implement (or document how to use) other input formats

  popsim-consortium/demes-python#575 · Filter by author molpopgen opened on Aug 26, 2024
  2

• Set generation time

  popsim-consortium/demes-python#574 · Filter by author hyanwong opened on Jul 16, 2024
  2

• simplify multiple pulses with common dest deme into a single pulse

  popsim-consortium/demes-python#390 · Filter by author grahamgower opened on Dec 1, 2021
  1

• remove various tests in favour of demes-spec/test-cases/ yaml files.

  popsim-consortium/demes-python#388 · Filter by author grahamgower opened on Nov 30, 2021

• Some error messages are not very helpful

  popsim-consortium/demes-python#383 · Filter by author apragsdale opened on Nov 15, 2021
  3

• demes to ms conversion only supports single-source pulses

  popsim-consortium/demes-python#363 · Filter by author apragsdale opened on Jul 28, 2021

• graph equality that ignores epoch and migration subdivisions

  popsim-consortium/demes-python#333 · Filter by author grahamgower opened on Jun 19, 2021
  2

• Add a graph.slice() feature to API

  popsim-consortium/demes-python#332 · Filter by author apragsdale opened on Jun 16, 2021
  18

• Consider exporting parts of demes/ms.py in a public API.

  popsim-consortium/demes-python#331 · Filter by author grahamgower opened on Jun 14, 2021

• Document that symmetric migrations in a YAML are parsed into pairs of AsymmetricMigrations

  docs
  popsim-consortium/demes-python#330 · Filter by author grahamgower opened on Jun 13, 2021
  1

• Graph.discrete_demographic_events() should document pulse ordering.

  docs
  popsim-consortium/demes-python#329 · Filter by author grahamgower opened on Jun 13, 2021

• from_ms() can't deal with negative growth rates in exponential form

  popsim-consortium/demes-python#325 · Filter by author grahamgower opened on Jun 11, 2021

• add/fix type annotations

  popsim-consortium/demes-python#323 · Filter by author grahamgower opened on Jun 9, 2021

• include validation function that makes sense for individual-based simulators

  popsim-consortium/demes-python#236 · Filter by author grahamgower opened on Mar 3, 2021
  4

• add options to Graph.successors() and Graph.predecessors() to include migrations/pulses

  enhancement
  popsim-consortium/demes-python#215 · Filter by author grahamgower opened on Feb 23, 2021

• check that error conditions produce human-readable error messages

  popsim-consortium/demes-python#211 · Filter by author grahamgower opened on Feb 22, 2021

• guarding against regressions

  popsim-consortium/demes-python#207 · Filter by author molpopgen opened on Feb 16, 2021
  2

• demes-python and demes-spec both carry example yaml files

  popsim-consortium/demes-python#203 · Filter by author grahamgower opened on Feb 16, 2021
  20

• graph utility methods

  enhancement
  popsim-consortium/demes-python#167 · Filter by author grahamgower opened on Dec 3, 2020
  3

• read newick format

  enhancement
  popsim-consortium/demes-python#82 · Filter by author mufernando opened on Nov 12, 2020
  4