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…V or haplotype data
…V or haplotype data
…is giving some errors for Ag3
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Closing as will be subsumed by PR hopefully coming tomorrow |
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Fix for issue 1349
Added to other rst files data sets for which "wgs_run_accessions" can be run. Also added similarly missing methods for which "@doc" is present in the code, for the datasets to which they can be run. This was limited to the "Basic Data Analysis," "Reference genome data access" and "Sample metadata access" sections, there may be further analysis-specific methods for each dataset missing but I decided it would be better to address this in a separate issue.
Whilst fixing this I noticed that the A darlingi photo was missing from the index page, this is now showing on the index.
There were also some warnings from Sphinx, which I have also fixed.
At some point I ran "ruff format" to fix a failing commit hook, this touched some of the notebooks and tests in the repo. I have checked the tests and they are still passing, the notebook changes apply to ld_pruning.ipynb and plot_haplotype_clustering.ipynb and effect string escaping only.
I have attached the html source obtained by running "make html" with this version.
html.zip