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@guigolab

Guigo Lab

Computational Biology of RNA Processing

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  1. ggsashimi ggsashimi Public

    Command-line tool for the visualization of splicing events across multiple samples

    Python 143 45

  2. grape-nf grape-nf Public

    An automated RNA-seq pipeline using Nextflow

    Nextflow 37 10

  3. geneid geneid Public

    Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences

    C 18 6

  4. FA-nf FA-nf Public

    Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow

    Perl 20 5

  5. sqtlseeker2-nf sqtlseeker2-nf Public

    An automated sQTL mapping pipeline using Nextflow

    R 7 3

  6. biogenome-portal biogenome-portal Public template

    Biogenome data portal

    Vue 6 2

Repositories

Showing 10 of 58 repositories
  • annotrieve Public

    Annotrieve: a central hub for eukaryotic genome annotations

    guigolab/annotrieve's past year of commit activity
    TypeScript 8 MIT 1 0 0 Updated Sep 15, 2026
  • guigolab/annotrieve-registry's past year of commit activity
    Python 1 2 0 0 Updated Sep 14, 2026
  • ebp-assemblies-tracker Public

    Tracks the assemblies under the Earth Biogenome Project (PRJNA533106) in NCBI Datasets

    guigolab/ebp-assemblies-tracker's past year of commit activity
    Shell 1 MIT 0 0 0 Updated Sep 14, 2026
  • BUSCO-tracker Public Forked from apollo994/BUSCO-tracker

    Automated BUSCO values for eukaryotic genome annotation

    guigolab/BUSCO-tracker's past year of commit activity
    Python 0 MIT 1 0 0 Updated Sep 13, 2026
  • alias-mapper Public Forked from Max25R/alias-mapper

    CLI to map alias names of biological molecules across naming conventions.

    guigolab/alias-mapper's past year of commit activity
    Python 0 MIT 1 0 0 Updated Sep 13, 2026
  • bioproject-genome-tracker Public

    Retrieve all the INSDC public assemblies under a BioProject umbrella

    guigolab/bioproject-genome-tracker's past year of commit activity
    0 MIT 3 0 0 Updated Sep 13, 2026
  • genome-annotation-tracker Public

    Tracks Eukaryotic genome annotations (gff) from NCBI and Ensembl

    guigolab/genome-annotation-tracker's past year of commit activity
    Python 0 0 0 0 Updated Sep 11, 2026
  • CLS3_GENCODE Public

    Charting thousands of novel gene loci in the human and mouse genomes through targeted full-length long-read RNA sequencing

    guigolab/CLS3_GENCODE's past year of commit activity
    R 5 3 0 0 Updated Sep 9, 2026
  • biogenome-portal Public template

    Biogenome data portal

    guigolab/biogenome-portal's past year of commit activity
    Vue 6 MIT 2 0 0 Updated Sep 8, 2026
  • geneid Public

    Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences

    guigolab/geneid's past year of commit activity
    C 18 6 3 0 Updated Jul 18, 2026