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  1. metacoder metacoder Public

    Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

    R 149 30

  2. Population_Genetics_in_R Population_Genetics_in_R Public

    A primer for computational tools to analyze genetics of populations in R

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  3. poppr poppr Public

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  4. analysis_of_microbiome_community_data_in_r analysis_of_microbiome_community_data_in_r Public

    This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://grunwaldlab.github.io/analysis_of_microbiome_community_data_in_r/

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  5. Reproducible-science-in-R Reproducible-science-in-R Public

    This site provides information on conducting reproducible science using the R language.

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Repositories

Showing 10 of 65 repositories
  • metaMapWidgetR Public

    R package wrapping meta-map-widget

    grunwaldlab/metaMapWidgetR's past year of commit activity
    R 0 0 2 0 Updated Nov 2, 2026
  • meta-map-widget Public

    Map widget for the PathogenSurveillance pipeline

    grunwaldlab/meta-map-widget's past year of commit activity
    JavaScript 0 0 2 0 Updated Nov 2, 2026
  • grunwaldlab/ramorum_ps_dashboard's past year of commit activity
    TeX 0 0 0 0 Updated Oct 27, 2026
  • pathogensurveillance Public Forked from nf-core/pathogensurveillance

    Surveillance of pathogens using population genomics and sequencing

    grunwaldlab/pathogensurveillance's past year of commit activity
    Nextflow 5 MIT 10 0 0 Updated Oct 22, 2026
  • metagenomic_identification_pipeline_atlas Public

    A structured literature review of pipeline capible of identifying organisms from shotgun metagenomic datasets

    grunwaldlab/metagenomic_identification_pipeline_atlas's past year of commit activity
    R 0 0 0 0 Updated Oct 15, 2026
  • Population_Genetics_in_R Public

    A primer for computational tools to analyze genetics of populations in R

    grunwaldlab/Population_Genetics_in_R's past year of commit activity
    HTML 92 55 11 1 Updated Sep 11, 2026
  • PathoSurveilR Public

    Tools to find and manipulate the output of pathogensurveillance

    grunwaldlab/PathoSurveilR's past year of commit activity
    R 3 1 5 0 Updated Sep 4, 2026
  • pathogensurveillance_publications Public

    Documentation for the pathogensurveillance pipeline

    grunwaldlab/pathogensurveillance_publications's past year of commit activity
    HTML 0 0 0 0 Updated Jul 22, 2026
  • metacoder Public

    Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

    grunwaldlab/metacoder's past year of commit activity
    R 149 30 43 0 Updated Jul 17, 2026
  • heattree Public

    A wrapper for the javascript `heat-tree` package for interactive phylogenetic tree visualization widgets

    grunwaldlab/heattree's past year of commit activity
    R 4 0 3 0 Updated May 8, 2026

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