Issues

• Alias virus_*/host_* params to enrichment_*/depletion_*

  dholab/nvd#58 · Filter by author wkgardner opened on Oct 7, 2026

• Graduate Big table and taxon table to default supported behavior

  dholab/nvd#57 · Filter by author wkgardner opened on Oct 6, 2026

• Negative-control (NC) k-mer depletion mode

  experimental
  dholab/nvd#56 · Filter by author wkgardner opened on Oct 5, 2026

• Standardize what "NVD" stands for: proposal "Nucleotide Virus Detection"

  enhancementnext-major-release
  dholab/nvd#55 · Filter by author wkgardner opened on Oct 5, 2026

• nf-corerize NVD modules

  next-major-release
  dholab/nvd#53 · Filter by author wkgardner opened on Sep 22, 2026
  1

• LabKey BLAST upload fails when sscinames exceeds 4,000 characters

  dholab/nvd#52 · Filter by author nrminor opened on Sep 18, 2026
  2

• The tests take too damn long!

  enhancement
  dholab/nvd#45 · Filter by author nrminor opened on Aug 5, 2026

• Is it overthinking it to implement additional clustering?

  question
  dholab/nvd#43 · Filter by author nrminor opened on Jul 29, 2026

• Should we use SPAdes and MEGAHIT

  enhancement
  dholab/nvd#42 · Filter by author nrminor opened on Jul 29, 2026

• Should the nvd "Big Table" results be integrated into a fancy Excel file?

  enhancement
  Feature

  dholab/nvd#41 · Filter by author nrminor opened on Jul 29, 2026
  1

• What should our policy for moving features out of "experimental" be?

  question
  dholab/nvd#40 · Filter by author nrminor opened on Jul 29, 2026
  2

• BLAST is slow. Is it possible to get the same benefits but make nvd faster?

  question
  dholab/nvd#39 · Filter by author nrminor opened on Jul 29, 2026

• In a perfect world, there would be a stable URL nvd users could go to for real-time run monitoring

  question
  Feature

  dholab/nvd#38 · Filter by author nrminor opened on Jul 29, 2026

• Fix source code publication in releases

  bug
  dholab/nvd#35 · Filter by author nrminor opened on Jul 29, 2026
  1

• Consider making nvd available via homebrew and mise

  enhancement
  Feature

  dholab/nvd#34 · Filter by author nrminor opened on Jul 29, 2026

• BLAST annotation is very slow. Is there any way to speed it up?

  question
  dholab/nvd#33 · Filter by author nrminor opened on Jul 29, 2026

• Input samplesheet does not support interleaved paired reads

  enhancement
  Feature

  dholab/nvd#30 · Filter by author wkgardner opened on Jul 1, 2026