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Scheduled monthly dependency update for July - #454

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pyup-bot wants to merge 15 commits into

pyup-scheduled-update-2026-07-01

Closed

Scheduled monthly dependency update for July#454
pyup-bot wants to merge 15 commits into
masterfrom
pyup-scheduled-update-2026-07-01

Commits on Jul 1, 2026
- Pin cython to latest version 3.2.8
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  committed
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- Pin numpy to latest version 2.5.0
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  e61e304
- Pin dask to latest version 2026.6.0
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- Pin scipy to latest version 1.18.0
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- Pin matplotlib to latest version 3.11.0
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- Pin seaborn to latest version 0.13.2
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- Pin pandas to latest version 3.0.4
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- Pin protopunica to latest version 0.14.8.post2
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- Pin scikit-learn to latest version 1.9.0
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- Pin h5py to latest version 3.16.0
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- Pin numexpr to latest version 2.14.1
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- Pin zarr to latest version 3.2.1
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- Pin hmmlearn to latest version 0.3.3
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- Pin ipython to latest version 9.15.0
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- Pin pyfasta to latest version 0.5.2
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