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Scheduled monthly dependency update for October - #443

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pyup-bot wants to merge 15 commits into

pyup-scheduled-update-2025-10-01

Closed

Scheduled monthly dependency update for October#443
pyup-bot wants to merge 15 commits into
masterfrom
pyup-scheduled-update-2025-10-01

Commits on Oct 1, 2025
- Pin cython to latest version 3.1.4
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  committed
  b8c5be2
- Pin numpy to latest version 2.3.3
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  c0b0429
- Pin dask to latest version 2025.9.1
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- Pin scipy to latest version 1.16.2
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  73d1888
- Pin matplotlib to latest version 3.10.6
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- Pin seaborn to latest version 0.13.2
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- Pin pandas to latest version 2.3.3
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- Pin protopunica to latest version 0.14.8.post2
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- Pin scikit-learn to latest version 1.7.2
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- Pin h5py to latest version 3.14.0
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- Pin numexpr to latest version 2.13.1
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- Pin zarr to latest version 3.1.3
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- Pin hmmlearn to latest version 0.3.3
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- Pin ipython to latest version 9.6.0
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- Pin pyfasta to latest version 0.5.2
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  a8098b2