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Scheduled monthly dependency update for September - #442

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pyup-bot wants to merge 15 commits into

pyup-scheduled-update-2025-09-03

Closed

Scheduled monthly dependency update for September#442
pyup-bot wants to merge 15 commits into
masterfrom
pyup-scheduled-update-2025-09-03

Commits on Sep 3, 2025
- Pin cython to latest version 3.1.3
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  committed
  b78b057
- Pin numpy to latest version 2.3.2
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  cba5106
- Pin dask to latest version 2025.7.0
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  eac2e07
- Pin scipy to latest version 1.16.1
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  8541aee
- Pin matplotlib to latest version 3.10.6
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  161e558
- Pin seaborn to latest version 0.13.2
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- Pin pandas to latest version 2.3.2
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- Pin protopunica to latest version 0.14.8.post2
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- Pin scikit-learn to latest version 1.7.1
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  157c25a
- Pin h5py to latest version 3.14.0
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- Pin numexpr to latest version 2.11.0
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- Pin zarr to latest version 3.1.2
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- Pin hmmlearn to latest version 0.3.3
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  37cc636
- Pin ipython to latest version 9.5.0
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- Pin pyfasta to latest version 0.5.2
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  8fb339b