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[r][cpp] Use threads and build results in place in pseudobulk_matrix()
#349koefoeden opened Oct 21, 2026Contributor
[r] Compute marker_features() group means with pseudobulk_matrix()
#348koefoeden opened Oct 21, 2026Contributor
[cpp] Speed up reading 10x and BED fragment files
#347koefoeden opened Oct 21, 2026Contributor
[r] Fix gene_score_weights_archr() when blacklisting removes all tiles
#345koefoeden opened Oct 21, 2026Contributor
[r][cpp] Fix crash reading NULLPAD/ASCII variable-length strings in anndata HDF5
#343JuanTejedor opened Jul 31, 2026
[r] Support graph list inputs in clustering
#337koefoeden opened May 6, 2026Contributor
2
Update docs for commit: [r] Fix knn_hnsw() input query rowname bug (#334)
#335github-actions[bot] opened Apr 9, 2026Bot
Update docs for commit: [r][cpp] Support 64 bit matrices, as well as signed matrices for Anndata reading and writing (#330)
#332github-actions[bot] opened Dec 16, 2025Bot
Update docs for commit: [python] bump pypa cibuildwheel to v3.2.0 (#308)
#331github-actions[bot] opened Dec 16, 2025Bot
[cpp] add explicit hdf5 v1.12.0 dependency
#329immanuelazn opened Dec 12, 2025Collaborator
Update docs for commit: [r] fix issue for qc_scATAC() near chromosome starts
#321github-actions[bot] opened Nov 11, 2025Bot
Update docs for commit: [r] fix issue in documentation examples in plot_embedding() (#316)
#318github-actions[bot] opened Nov 11, 2025Bot
test
#317immanuelazn opened Nov 10, 2025Collaborator
[r] Prepare package for CRAN
#311immanuelazn opened Oct 21, 2025Collaborator
[r][cpp] Add sparse = TRUE as an option for pseudobulk_matrix()
#268ycli1995 opened Jun 14, 2025Contributor
14
[r][cpp] Add dense cross-product and related ops
#243bnprks opened Apr 17, 2025Owner
13
[r] clean up svds docs
#206immanuelazn opened Mar 8, 2025Collaborator
2
Normalizations, Feature Selections, DimReduction S3 class, (Iterative) Lsi Implementation, Partial function framework, Clustering changes and Framework
#189immanuelazn opened Jan 27, 2025Collaborator
35
[r] add iterative lsi design docs
#167immanuelazn opened Dec 12, 2024Collaborator
3
[cpp] update hwy to v1.2.0
#163immanuelazn opened Nov 25, 2024Collaborator
1

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[r][cpp] Use threads and build results in place in `pseudobulk_matrix()`

[r] Compute `marker_features()` group means with `pseudobulk_matrix()`

[cpp] Speed up reading 10x and BED fragment files

[r] Fix `gene_score_weights_archr()` when blacklisting removes all tiles

[r][cpp] Fix crash reading NULLPAD/ASCII variable-length strings in anndata HDF5

[r] Support graph list inputs in clustering

Update docs for commit: [r] Fix `knn_hnsw()` input query rowname bug (#334)

Update docs for commit: [r][cpp] Support 64 bit matrices, as well as signed matrices for Anndata reading and writing (#330)

Update docs for commit: [python] bump pypa cibuildwheel to v3.2.0 (#308)

[cpp] add explicit hdf5 v1.12.0 dependency

Update docs for commit: [r] fix issue for `qc_scATAC()` near chromosome starts

Update docs for commit: [r] fix issue in documentation examples in `plot_embedding()` (#316)

test

[r] Prepare package for CRAN

[r][cpp] Add `sparse = TRUE` as an option for `pseudobulk_matrix()`

[r][cpp] Add dense cross-product and related ops

[r] clean up svds docs

Normalizations, Feature Selections, DimReduction S3 class, (Iterative) Lsi Implementation, Partial function framework, Clustering changes and Framework

[r] add iterative lsi design docs

[cpp] update hwy to v1.2.0

Pull requests