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@bhklab

BHKLAB

The Haibe-Kains Laboratory @ Princess Margaret Cancer Centre
README.md

Mission

Our overarching goal consists of developing cutting-edge computational tools and predictive models to identify new cancer vulnerabilities and improve the way precision oncology is delivered to patients.

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  1. PharmacoGx PharmacoGx Public

    R package to analyze large-scale pharmacogenomic datasets.

    R 71 26

  2. med-imagetools med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    Python 60 11

  3. AnnotationGx AnnotationGx Public

    An R package to query various bio/chem-informatics databases APIs to construct annotation files.

    R 2 1

  4. readii readii Public

    Radiomic Extraction and Analysis for DICOM Images (READII)

    Jupyter Notebook 5

  5. orcestra-downloader orcestra-downloader Public

    Seamless CLI access to orcestra datasets

    Python 1

  6. handbook handbook Public

    Lab Handbook For BHKLab

    3

Repositories

Showing 10 of 258 repositories
  • STS-data-ingestion Public

    Repository containg database models, extraction pipelines (from and .rds to csv), and database seeding scripts for the Small Tissue Sarcoma Data Portal project

    bhklab/STS-data-ingestion's past year of commit activity
    R 0 0 0 2 Updated Sep 16, 2026
  • med-imagenet Public

    Med-ImageNet: A Standardized Resource for AI-Ready Oncology Imaging

    bhklab/med-imagenet's past year of commit activity
    Python 2 GPL-3.0 0 2 1 Updated Sep 16, 2026
  • STS-backend Public

    Backend portion of the Small Tissue Sarcoma project. This respository is primarily focused recieving and fulfilling data requests from the STS-frontend application. More specifically, this repository will recieve requests and utilize the SQL Alchemy ORM to extract data in an efficient fashion from the database and send it to the client.

    bhklab/STS-backend's past year of commit activity
    Python 0 0 0 0 Updated Sep 16, 2026
  • STS-frontend Public

    Front-end portion of the Small Tissue Sarcoma project. This respository is primarily focused on the UI of the STS data portal. Specifically this repository is responsible for coordinating data requests to the STS-backend, creating and dynamically managing dataset visualizations, and providing an accounting system for datasets access.

    bhklab/STS-frontend's past year of commit activity
    TypeScript 0 0 0 0 Updated Sep 16, 2026
  • science-portal-mailing Public
    bhklab/science-portal-mailing's past year of commit activity
    Python 0 1 2 1 Updated Sep 4, 2026
  • bhklab-website Public

    BHK Lab website

    bhklab/bhklab-website's past year of commit activity
    JavaScript 0 0 4 0 Updated Sep 4, 2026
  • mRMRe Public

    mRMRe is a package for Parallelized Minimum Redundancy, Maximum Relevance (mRMR) Ensemble Feature Selection

    bhklab/mRMRe's past year of commit activity
    C++ 21 6 15 1 Updated Sep 4, 2026
  • readii Public

    Radiomic Extraction and Analysis for DICOM Images (READII)

    bhklab/readii's past year of commit activity
    Jupyter Notebook 5 MIT 0 29 (3 issues need help) 5 Updated Sep 3, 2026
  • snf2 Public

    Modern Python implementation of SNF package

    bhklab/snf2's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 3, 2026
  • readii_2_roqc Public
    bhklab/readii_2_roqc's past year of commit activity
    Jupyter Notebook 2 1 4 1 Updated Sep 3, 2026
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