Issues

• Clarify which is the actual resolution limit of omega's p-values

  bbglab/omega#57 · Filter by author FerriolCalvet opened on May 20, 2026

• Add option to not ignore dN/dS computation for cases with 0 mutations

  bbglab/omega#55 · Filter by author FerriolCalvet opened on May 18, 2026
  

• account for multiple testing when reporting the results

  bbglab/omega#52 · Filter by author FerriolCalvet opened on Apr 5, 2026
  1

• Add option to keep synonymous at 1 for multi

  bbglab/omega#48 · Filter by author FerriolCalvet opened on May 19, 2025
  1

• Update description in the README.md with the latest updates

  bbglab/omega#46 · Filter by author FerriolCalvet opened on Jan 23, 2025

• Decide about mutability and subgenic regions

  bbglab/omega#45 · Filter by author FerriolCalvet opened on Jan 21, 2025

• code-review | omega

  code-review 👩‍💻
  bbglab/omega#40 · Filter by author FerriolCalvet opened on Dec 18, 2024

• code-review | estimator

  code-review 👩‍💻
  bbglab/omega#39 · Filter by author FerriolCalvet opened on Dec 18, 2024

• code-review | preprocessing postprocess annotation

  code-review 👩‍💻
  bbglab/omega#38 · Filter by author FerriolCalvet opened on Dec 18, 2024

• code-review | preprocessing generate sites

  code-review 👩‍💻
  bbglab/omega#37 · Filter by author FerriolCalvet opened on Dec 18, 2024

• code review | preprocessing compute_mutabilities

  code-review 👩‍💻
  bbglab/omega#36 · Filter by author FerriolCalvet opened on Dec 18, 2024
  1

• Learning curve fails when there are no iterations happening

  on-hold
  bbglab/omega#31 · Filter by author FerriolCalvet opened on Oct 17, 2024
  2

• report synonymous mutations used as an extra column in omega output

  bbglab/omega#30 · Filter by author FerriolCalvet opened on Sep 26, 2024

• Omega-indels

  bbglab/omega#24 · Filter by author koszulordie opened on Apr 30, 2024

• No mutations of the mutation type that is being analyzed

  discussdocumentation
  bbglab/omega#18 · Filter by author FerriolCalvet opened on Apr 10, 2024 · First package release
  2

• Omega CV

  bbglab/omega#15 · Filter by author FerriolCalvet opened on Feb 19, 2024

• Add tests

  bbglab/omega#14 · Filter by author FerriolCalvet opened on Feb 13, 2024

• Revise all TODOs in the code

  code-review 👩‍💻
  bbglab/omega#12 · Filter by author FerriolCalvet opened on Feb 9, 2024

• Handle properly all preprocessing modes with the new package interface

  bbglab/omega#9 · Filter by author FerriolCalvet opened on Feb 9, 2024

• multiple MCMC chains

  bbglab/omega#6 · Filter by author koszulordie opened on Oct 11, 2023

• Define location of preprocessing outputs

  discusson-hold
  bbglab/omega#3 · Filter by author FerriolCalvet opened on Aug 24, 2023