[dependabot]

Bumps the pip-minor-and-patch group with 4 updates in the / directory: numpy, pandas, scipy and pytest.

Updates numpy from 2.4.6 to 2.5.4

Release notes

Sourced from numpy's releases.

v2.5.4 (Oct 10, 2026)

NumPy 2.5.4 Release Notes

Released on 2026-10-10.

NumPy 2.5.4 is a patch release that fixes bugs discovered after the 2.5.3 release. Highlights are:

• Many typing fixes and improvements,
• A workaround for the MSVC 19.51 bug, see below.

This release supports Python versions 3.12-3.15.

Improvements

• numpy.linalg.svd and numpy.linalg.lstsq now raise for inputs containing infinities instead of returning garbage results.

• Fixed hangs in numpy.linalg.svd and numpy.linalg.lstsq for certain inputs containing infinities for recent versions of some LAPACK implementations.

• numpy.linalg.cond now handles non-finite inputs more consistently.

(gh-32593)

StringDType hashing with NaN sentinels

StringDType instances with equivalent floating-point NaN sentinels now have equal hashes. Previously, distinct NaN objects could produce equal dtype instances with different hashes, causing dictionary lookups and set deduplication to fail.

(gh-32563)

Changes

MaskedArray resets a fill_value that cannot be represented in a new dtype

A fill_value copied from a source array is now reset to the default fill_value for the new dtype when it cannot be represented in that dtype. Previously the copied value could be stale: ufuncs that change dtype left the result holding a fill_value typed for the old dtype, which raised a TypeError only when something later validated it (such as .view()), and a floating point fill_value that overflows an integer dtype was kept as an out-of-range value together with a RuntimeWarning. Both now fall back to the default, including when a masked array is passed to MaskedArray with a different dtype. A fill_value given explicitly by the user is still validated and raises as before. This can now raise a ComplexWarning if the fill_value is complex and the new dtype is real.

... (truncated)

Commits

• a3d0ef1 Merge pull request #32969 from charris/prepare-2.5.4
• 087b536 MAINT: Make OpenBLAS version check use 2.5.x branch.
• 91acd87 REL: Prepare for the NumPy 2.5.4 release.
• 9cc555b Merge pull request #32956 from charris/backport-typing-1
• e04b972 TYP: dtype[void].names: allow setting with list (#32943)
• d929969 TYP: timedelta64: datetime.timedelta construction isn't deprecated (#...
• 839467f TYP: ma.getmaskarray: accept array-likes (#32934)
• 64b721b TYP: polynomial: accept scalar coef in the poly constructors (#32931)
• 06b7ad2 TYP: void: accept any dtype: str in constructor calls (#32928)
• c7bcd2c TYP: place: widen mask (#32926)
• Additional commits viewable in compare view

Updates pandas from 3.0.6 to 3.1.0

Release notes

Sourced from pandas's releases.

pandas 3.1.0

We are pleased to announce the release of pandas 3.1.0. This release includes some new features, bug fixes, and performance improvements. We recommend that all users upgrade to this version.

Highlights include:

• New DataFrame.select() and updated DataFrame.filter() method
• Faster pd.read_csv(), with parallel reads of large files

See the detailed release notes for a list of all the changes.

The release can be installed from PyPI:

python -m pip install --upgrade pandas

Or from conda-forge

conda install -c conda-forge pandas

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

pandas 3.1.0rc0

We are pleased to announce a release candidate for pandas 3.1.0.

See the whatsnew for a list of all the changes.

The release can be installed from PyPI:

python -m pip install --upgrade --pre pandas==3.1.0rc0

Or from conda-forge

conda install -c conda-forge/label/pandas_rc pandas==3.1.0rc0

Please report any issues with the release candidate on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

Commits

• c6f4676 RLS: 3.1.0
• dd69475 Backport PR #71468 on branch 3.1.x (DOC: 3.1 whatsnew: add some structure to ...
• 4ccc19a Backport PR #71465 on branch 3.1.x (DOC: update announce (contributor listing...
• 24dae63 [backport 3.1.x] DOC: cleanup 3.1.0 whatsnew (#71408) (#71466)
• 8519ca6 [backport 3.1.x] CI: temporary pin dateutil to <3 (#71461) (#71464)
• 2126193 Backport PR #71387 on branch 3.1.x (BUG: fix string regex operations with $ e...
• 4700f5d Backport PR #71442 on branch 3.1.x (BUG: parallel read_csv raising released m...
• 08efb14 Backport PR #71456 on branch 3.1.x (TST: Fix test_reduce_array until reduct...
• ee8dcb7 Backport PR #71429 on branch 3.1.x (DOC: add dedicated 3.1 whatsnew section f...
• d93e32c Backport PR #71383 on branch 3.1.x (BUG: fix string regex operations with Pyt...
• Additional commits viewable in compare view

Updates scipy from 1.17.1 to 1.18.1

Release notes

Sourced from scipy's releases.

SciPy 1.18.1 Release Notes

SciPy 1.18.1 is a bug-fix release with no new features compared to 1.18.0. This release includes binaries on PyPI for Python 3.15, and the minimum required version of the GCC toolchain has been increased to 10.3.0.

Authors

• Name (commits)
• Wasim Akram (2) +
• Jake Bowhay (1)
• Michael Bratsch (1)
• Dietrich Brunn (1)
• Evgeni Burovski (1)
• Aadya Chinubhai (1)
• Lucas Colley (3)
• Tekin Ertekin (1) +
• Fuyugithub (2) +
• Ralf Gommers (11)
• Joren Hammudoglu (1)
• Ijtihed Kilani (1) +
• Andrew Nelson (2)
• Ilhan Polat (1)
• Tyler Reddy (39)
• romao05 (1) +
• Michael Simacek (1) +
• Jacob Vanderplas (2)

A total of 18 people contributed to this release. People with a "+" by their names contributed a patch for the first time. This list of names is automatically generated, and may not be fully complete.

Note that the source and binary assets associated with this release were published to PyPI using trusted publishing, and so the trusted assets and their hashes are made available more securely at https://pypi.org/project/scipy/1.18.1/ rather than providing them here in a less secure manner.

A complete list of issues and pull requests associated with this release is available in the associated README.txt.

SciPy 1.18.0 Release Notes

SciPy 1.18.0 is the culmination of 6 months of hard work. It contains many new features, numerous bug-fixes, improved test coverage and better documentation. There have been a number of deprecations and API changes in this release, which are documented below. All users are encouraged to upgrade to this release, as there are a large number of bug-fixes and optimizations. Before upgrading, we recommend that users check that their own code does not use deprecated SciPy functionality (to do so, run your code with python -Wd and check for DeprecationWarning s).

... (truncated)

Commits

• e4e854e REL: SciPy 1.18.1 rel commit
• 3c8e5f8 BLD, MAINT: pythran bounds for 1.18.1 (#25978)
• 54c0f95 BLD, MAINT: pythran bounds for 1.18.1
• 45a355d Merge pull request #25884 from tylerjereddy/treddy_backports_1.18.1
• a717e28 DOC: PR 25884 revisions
• bb489c0 DOC: PR 25884 revisions
• 09bca24 BLD: package: pin meson on win-64 to avoid clang-cl bug (#25913)
• 095fe56 DOC, BLD: PR 25884 revisions
• e66ea64 DOC: update minimum GCC version in toolchain roadmap
• c021653 TST: tolerance bumps and skips on 32-bit platforms
• Additional commits viewable in compare view

Updates pytest from 9.1.1 to 9.2.0

Release notes

Sourced from pytest's releases.

9.2.0

pytest 9.2.0 (2026-10-27)

Removals and backward incompatible breaking changes

• #14716: -c now raises a usage error for a path that does not exist, is a directory, or is in a format pytest has no loader for. Such paths were previously either ignored or reported as an unhandled FileNotFoundError.

• #8593: The indirect, ids and scope arguments of Metafunc.parametrize() <pytest.Metafunc.parametrize> -- and therefore of @pytest.mark.parametrize <pytest.mark.parametrize ref> -- are now keyword-only.

  Passing them positionally was a common source of confusing errors, e.g. parametrize("arg1", "arg2", [(1, 2)]) made the argvalues land in indirect and failed with indirect fixture '(1, 2)' doesn't exist; such mistakes now fail with an understandable TypeError. The type annotations have always declared these arguments as keyword-only.

• #993: Plugin import failures at startup are now reported and classified instead of escaping as a raw traceback with the accidental exit code 1:

  • a plugin that cannot be found -- via -p, pytest_plugins or PYTEST_PLUGINS -- exits with pytest.ExitCode USAGE_ERROR (4), like a conftest.py that fails to import;
  • a plugin that is found but raises while importing -- including a broken pytest11 entry point or a missing plugin dependency -- exits with pytest.ExitCode INTERNAL_ERROR (3), with the traceback preserved.

  pytest.main now returns these codes instead of raising ImportError. Also fixed an IndexError from pytest's own internals when the plugin raised an exception with no arguments.

Deprecations (removal in next major release)

• #14742: The private _pytest.python.CallSpec2 name has been renamed to CallSpec. The old CallSpec2 alias remains available for now and will be removed in pytest 10 or 11.

• #14755: Schedule yield_fixture decorator for removal in pytest 10 or 11.

• #14774: Similarly to the deprecation of class-scoped fixtures defined as instance methods in pytest 9.1, all higher-scoped fixtures (module, package, and session) defined as instance methods are now deprecated.

  They suffer from the same issue the original deprecation only fixed for class-scoped fixtures, see 10819 and 14011.

• #14808: Passing a non-string value to a string-typed ini option now emits a pytest.PytestRemovedIn10Warning. This affects [tool.pytest.ini_options] in pyproject.toml. In pytest 10 this will raise a TypeError, matching the behavior of the corresponding TOML config path.

• #7323: Passing bytes to TerminalReporter.write_line() is now deprecated, pass a str instead.

New features

• #14743: Full diff: now contains a legend explaining the + & - symbols in diff output.
• #2781: When strict_markers is enabled, marker names used in -m expressions are now validated against registered markers.
• #6881: Added the parametrize_long_str_id_strategy configuration option to control how long str/bytes parameter values are handled in auto-generated test IDs. Explicit IDs set via ids=[...] or pytest.param(..., id=...) are not affected. Available strategies: short (default, values over 100 chars fall back to argname+index), sha256 (SHA-256 hex digest), legacy (keep full value), and disallow (error requesting explicit IDs).

Improvements in existing functionality

• #10745: A RecursionError whose recursion origin cannot be located now shows only the first and last 10 stack frames, matching what pytest already did when locating the origin failed outright. Previously the full traceback -- often around a thousand near-identical frames -- was rendered, which was both slow and unreadable. Pass --full-trace to see every frame.

... (truncated)

Commits

• ae1d0ff Prepare release version 9.2.0
• 143ce31 pre-commit: exclude codespell on generated release announcements
• 532dc5f tox: add attrs dependency to regen, needed in reportingdemo.rst
• a7b2446 Merge pull request #15245 from pytest-dev/claude/project-thread-9jcf91
• 679d09c [pre-commit.ci] pre-commit autoupdate (#15266)
• 41d12cd docs: clarify typing for yield fixtures
• b9022ba Merge pull request #15182 from 1871698/docs/improve-getting-started-description
• 16f87a7 docs: improve getting-started.rst test execution description
• 082ed70 Merge pull request #15255 from pytest-dev/claude/project-thread-eoi3d6
• ae37a01 Merge pull request #15227 from pytest-dev/claude/project-thread-4etye4
• Additional commits viewable in compare view

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