Issues

• AMULET.py crashes on empty --rfilter BED (pandas EmptyDataError)

  UcarLab/AMULET#30 · Filter by author chlee-tabin opened on May 13, 2026

• OOM in generateMatrix: dense float64 matrix wastes 8x memory on high-coverage data (e.g. 10x multiome)

  UcarLab/AMULET#28 · Filter by author chlee-tabin opened on May 13, 2026

• thresholds in Drosophila samples

  UcarLab/AMULET#26 · Filter by author hannahd1604 opened on Apr 11, 2025
  1

• human autosomes list of Amulet vs fragment file

  UcarLab/AMULET#25 · Filter by author Erfan1369 opened on Oct 4, 2024
  4

• down stream analysis after running AMULET.sh

  UcarLab/AMULET#24 · Filter by author Erfan1369 opened on Jul 10, 2024
  5

• Amulet output contains only Overlap file, there is no overlaps summary

  UcarLab/AMULET#23 · Filter by author jasiozaucha opened on Feb 7, 2024
  6

• Count Matrix before binarization and artificial doublets simulation

  UcarLab/AMULET#21 · Filter by author Yuntian0716 opened on Nov 16, 2022
  3

• Use with outputs of scATAC-pro

  UcarLab/AMULET#20 · Filter by author jonhsussman opened on Aug 21, 2022
  2

• Truncated jar exceptions - Test files missing

  UcarLab/AMULET#19 · Filter by author VangelisTheodorakis opened on Jul 12, 2022
  1

• Troubles with running doublet annotation part

  UcarLab/AMULET#18 · Filter by author AtaiDobrynin opened on Jun 10, 2022
  13

• Can AMULET identify doublets with relatively low read counts from cells with a wide range of read counts

  UcarLab/AMULET#17 · Filter by author Yydtqqqg opened on Apr 4, 2022
  9

• Low no. of multiplets detected than expected

  UcarLab/AMULET#13 · Filter by author AnjaliC4 opened on Nov 21, 2021
  1

• Multiome input

  UcarLab/AMULET#11 · Filter by author tinakeshav opened on Oct 29, 2021
  8

• homotypic vs heterotypic multiplet output files

  UcarLab/AMULET#10 · Filter by author AnjaliC4 opened on Oct 15, 2021
  1

• Labels cycling cells as doublets

  UcarLab/AMULET#9 · Filter by author mzhibo opened on Sep 22, 2021
  2