Roth Lab

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1. pyclone pyclone Public

   Probabilistic model for inferring clonal population structure from deep NGS sequencing.

   Python 126 37

2. pyclone-vi pyclone-vi Public

   Fast method for inferring cancer clonal population structure from SNV data.

   Python 77 13

3. pgsm pgsm Public

   Python 12 2

4. PhyClone PhyClone Public

   Accurate Bayesian reconstruction of cancer phylogenies from bulk sequencing.

   Python 8 3

5. contra_workshop contra_workshop Public

   Notes from the CONTRA cancer evolution workshop

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6. SpatialSort SpatialSort Public

   A spatially aware Bayesian clustering approach that allows for the incorporation of prior biological knowledge.

   Python 5