Pombert Lab

Pinned Loading

1. 3DFI 3DFI Public

   The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.

   Perl 20 7

2. SYNY SYNY Public

   The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.

   Perl 53 3

3. SSRG SSRG Public

   The SSRG pipeline was created as a simple and focused tool to investigate genetic diversity between genomes.

   Perl 4 4

4. ID16S ID16S Public

   This pipeline reconstructs the composition of species from 16S amplicon sequencing datasets.

   Perl 1

5. A2GB A2GB Public

   A2GB is a pipeline that will transform the genome annotation files exported from Apollo in preparation for sequence submission to NCBI’s GenBank.

   Perl 3

6. Publication_scripts Publication_scripts Public

   This repository contains scripts from published or submitted manuscripts.

   Perl 3 3