Phenome Health

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1. biomapper2 biomapper2 Public

   Map biomedical entities to KG nodes (entity linking and resolution)

   Python 2 1

2. ddharmon ddharmon Public

   Biomedical Data Dictionary Harmonization Tool: cluster semantically equivalent questionnaire variables across studies and anchor each to a Common Data Element (CDE), generating var -> CDE transform…

   Python 1

3. kraken kraken Public

   Phenome Health's unified general-purpose knowledge graph (Knowledge Research and Analysis Kit for Evidence Networks)

   Python

4. biovector-eval biovector-eval Public

   A framework for optimizing vector databases in biological/biomedical domains. Evaluates embedding models, quantization strategies, and index configurations for metabolites, proteins, clinical tests…

   Jupyter Notebook

5. PortFlow PortFlow Public

   A small toolkit for model portability. Includes conditional normalizing flows for fast imputation, transfer lasso for transfer learning of linear models, and PortFlow which combines both into a sin…

   Python

6. biomapper biomapper Public

   Python