Issues

• request to update Docker release

  Oshlack/JAFFA#144 · Filter by author yinshiyi opened on Sep 13, 2026
  2

• Output file path and output file name

  Oshlack/JAFFA#138 · Filter by author apallav21 opened on Jul 16, 2026
  2

• davidsongroup/jaffa:2.5 Docker image fails under Singularity — writes to absolute root paths

  Oshlack/JAFFA#137 · Filter by author amarinderthind opened on Apr 10, 2026
  7

• jaffal error when using a non-supported genome without available Ensembl annotations

  Oshlack/JAFFA#136 · Filter by author ZDD116 opened on Apr 10, 2026
  1

• review nextflow implementation of jaffaL

  Oshlack/JAFFA#131 · Filter by author yinshiyi opened on Feb 8, 2026
  4

• use jaffa conda env to run jaffal

  Oshlack/JAFFA#124 · Filter by author yinshiyi opened on Jan 20, 2026
  3

• How to remove filter for Jaffal results ?

  Oshlack/JAFFA#121 · Filter by author wdesaintjean opened on Nov 4, 2025
  2

• Fix reflective access warning on Docker image

  Oshlack/JAFFA#118 · Filter by author olliecheng opened on Jun 26, 2025
  2

  

• Issue with std::regex_error in JAFFAL using Long method on mm10 Nanopore

  Oshlack/JAFFA#117 · Filter by author Bioinfor-Lix opened on Jun 25, 2025
  2

• JAFFAL error using custom hg38 GENCODE v44

  Oshlack/JAFFA#116 · Filter by author lauren-tjoeka opened on Jun 25, 2025
  7

• Issues trying to run Jaffa General error during conversion: Unsupported class file major version 65

  Oshlack/JAFFA#115 · Filter by author alig99 opened on Jun 24, 2025
  2

• About numbers of "supporting reads" in jaffa_results.csv and ".fastq.reads" files

  Oshlack/JAFFA#114 · Filter by author nofre03 opened on Jun 11, 2025
  2

• [likely bug]: reformat.sh from bbmap (ReformatReads) fails

  Oshlack/JAFFA#113 · Filter by author tamuanand opened on May 30, 2025
  5

• Error when running on long-read data

  Oshlack/JAFFA#109 · Filter by author Kyung-TaeLee opened on Mar 13, 2025
  2

• Error while running the JAFFAL

  Oshlack/JAFFA#108 · Filter by author usama-khan1998 opened on Jan 25, 2025
  4

• How to apply JAFFAL to other species

  Oshlack/JAFFA#107 · Filter by author jianghao0799 opened on Nov 15, 2024

• Error on running ONT data

  Oshlack/JAFFA#93 · Filter by author parsboy66 opened on Jun 17, 2023
  4

• Multiple threading is not working

  Oshlack/JAFFA#88 · Filter by author albuskilili opened on Oct 19, 2022
  12

• Crash when no fusions are present

  Oshlack/JAFFA#84 · Filter by author nrhorner opened on Jul 26, 2022

• Please provide a conda wrapper for jaffal, as for other jaffa functionality

  Oshlack/JAFFA#74 · Filter by author oneillkza opened on Mar 15, 2022
  2