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Add OrthoFinder example output - #387

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Add OrthoFinder example output#387
musharna wants to merge 1 commit into
MultiQC:mainfrom
musharna:orthofinder

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@musharna

@musharna musharna commented Aug 30, 2026

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Example output for the new OrthoFinder module in MultiQC/MultiQC#3634.

Adds data/modules/orthofinder/Results_Mycoplasma_v3.1.5/Comparative_Genomics_Statistics/ containing the two files the module parses:

  • Statistics_Overall.tsv
  • Statistics_PerSpecies.tsv

They come from a full OrthoFinder 3.1.5 run on the four Mycoplasma proteomes that OrthoFinder itself ships as ExampleData, so the data is public and small (152 lines total). Both files are CRLF, as OrthoFinder writes them.

Note for anyone regenerating this: OrthoFinder 3 only writes Comparative_Genomics_Statistics/ when the run continues past orthogroup inference. A run stopped with -og produces no such directory.

Statistics_Overall.tsv and Statistics_PerSpecies.tsv from an OrthoFinder
3.1.5 run on the four Mycoplasma proteomes bundled with OrthoFinder as
ExampleData. These are the two files the MultiQC OrthoFinder module parses.
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