MDHHS-Bioinformatics

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1. corge corge Public

   Nextflow pipeline for bacterial clustering and linkage detection based on core genome analysis, designed to support genomic surveillance and outbreak investigations

   Nextflow 11

2. basset basset Public

   Nextflow pipeline for species-specific typing of bacteria

   Nextflow 11

3. poodle poodle Public

   Nextflow pipeline that integrates reference-based SNP calling, recombination filtering, and pangenome analysis to detect genetically linked isolates, designed for bacterial genomic surveillance and…

   Nextflow 10