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@IARCbioinfo

IARC bioinformatics platform

International Agency for Research on Cancer bioinformatics platform

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  1. IARC-nf IARC-nf Public

    List of IARC bioinformatics pipelines and resources

    58 10

  2. needlestack needlestack Public

    Multi-sample somatic variant caller

    R 52 13

  3. mutspec mutspec Public

    Mutation Spectra Analysis

    Perl 10 2

  4. alignment-nf alignment-nf Public

    Whole Exome/Whole Genome Sequencing alignment pipeline

    Nextflow 30 13

  5. RNAseq-nf RNAseq-nf Public

    RNAseq analysis pipeline

    HTML 28 10

  6. mutect-nf mutect-nf Public

    Mutect pipeline with Nextflow

    Nextflow 9 7

Repositories

Showing 10 of 125 repositories
  • histology-multiomics-explorer Public

    Tumour Histology and Multi-omics Explorer: curated public metadata linking tumour histology with TCGA RNA-seq and methylation and spatial omics studies. Agent-ready: llms.txt and a read-only MCP server.

    IARCbioinfo/histology-multiomics-explorer's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Oct 16, 2026
  • methylkey Public
    IARCbioinfo/methylkey's past year of commit activity
    R 4 GPL-3.0 4 1 0 Updated Sep 30, 2026
  • pavoa-nf Public

    Pipeline for variant detection. Preprocessing Alignment, Variant calling, Optimization, Annotation

    IARCbioinfo/pavoa-nf's past year of commit activity
    Nextflow 2 GPL-3.0 0 0 0 Updated Sep 29, 2026
  • RNAseq-nf Public

    RNAseq analysis pipeline

    IARCbioinfo/RNAseq-nf's past year of commit activity
    HTML 28 GPL-3.0 10 4 0 Updated Aug 5, 2026
  • BQSR-nf Public

    Nextflow script for base quality score recalibration of bam files using GATK

    IARCbioinfo/BQSR-nf's past year of commit activity
    Nextflow 0 GPL-3.0 1 2 0 Updated Aug 3, 2026
  • MS_sigvar Public

    Repository with code used to produce the figures from Morrison et al. doi.org/10.1101/2023.11.23.23298821

    IARCbioinfo/MS_sigvar's past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Jul 22, 2026
  • CTInfer Public

    CTInfer (Compound Target Inference Tool) is a desktop application developed for IARC to automatically identify proteins inhibited by chemical compounds.

    IARCbioinfo/CTInfer's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jul 3, 2026
  • PACMOS Public
    IARCbioinfo/PACMOS's past year of commit activity
    R 2 0 0 0 Updated Jun 26, 2026
  • MS_lungNENomics Public

    Repository with scripts from the lungNENomics manuscript

    IARCbioinfo/MS_lungNENomics's past year of commit activity
    HTML 0 GPL-3.0 1 0 0 Updated Jun 5, 2026
  • mutacet_2026 Public

    Scripts for mutacet publication, 2026

    IARCbioinfo/mutacet_2026's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated May 8, 2026

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