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DICOM extract: multi-echo plane detection, modality fallback, and 9 smaller fixes - #153

Merged

Hendrik-code merged 50 commits into

mainfrom

dicom-extract-cleanup

Oct 19, 2026

Merged

DICOM extract: multi-echo plane detection, modality fallback, and 9 smaller fixes#153
Hendrik-code merged 50 commits into
mainfrom
dicom-extract-cleanup

Commits on Aug 26, 2026
- add claude reg info
  robert-graf
  committed
  7f04f69
Commits on Aug 31, 2026
- Merge branch 'Point-Reg' of github.com:Hendrik-code/TPTBox into Point-Reg
  robert-graf
  committed
  d7ef944
Commits on Sep 2, 2026
- Merge branch 'main' of github.com:Hendrik-code/TPTBox
  robert-graf
  committed
  3752050
Commits on Sep 8, 2026
- add smauglab support for internal trainier
  robert-graf
  committed
  d7268a6
- internal scripts + parallel prewarm of get_grid_info
  robert-graf
  committed
  f7ffde1
Commits on Sep 13, 2026
- edgecases
  robert-graf
  committed
  ea7de02
- speed up, split vert and ivd
  robert-graf
  committed
  d0ebb89
- update Readme
  robert-graf
  committed
  b12cf44
- update nako loader
  robert-graf
  committed
  69fdf16
- nako cannonical
  robert-graf
  committed
  4bb6714
Commits on Sep 14, 2026
- add prelimenary scoliose and pelic paramerters
  robert-graf
  committed
  bd99bb6
- add NAKO Head scanns
  robert-graf
  committed
  ba8269e
- Merge branch 'Point-Reg' of github.com:Hendrik-code/TPTBox into Point-Reg
  robert-graf
  committed
  173af27
- Merge branch 'nako-follow-up-export' into Point-Reg
  robert-graf
  committed
  c75ecce
Commits on Sep 15, 2026
- fix multi echo bug
  robert-graf
  committed
  07aac40
- fix: return False on unknown error in _extract_nii_from_dicom
  
  robert-graf
  and
  claude
  committed
  88ab7e8
- fix: skip NaN direction in _classic_get_grouped_dicoms for multi-echo
  
  robert-graf
  and
  claude
  committed
  391a28e
- fix: split every 4-D DICOM output, use zip_strict for echo iteration
  
  robert-graf
  and
  claude
  committed
  f0c70f4
- fix: yield root paths one by one in _find_all_files
  
  robert-graf
  and
  claude
  committed
  0894e46
- perf: gate _read_dicom_files on DICM preamble + extension blocklist
  
  robert-graf
  and
  claude
  committed
  4c63431
- fix: cap _inc_key retry loop at 10 000 iterations
  
  robert-graf
  and
  claude
  committed
  7f9e38b
- docs: clarify n_cpu semantics in extract_dicom_folder
  
  robert-graf
  and
  claude
  committed
  7a7ade2
- fix: match get_plane_dicom threshold to docstring, warn on failure
  
  robert-graf
  and
  claude
  committed
  a09de6a
- feat: expand map_series_description_to_file_format_default
  
  robert-graf
  and
  claude
  committed
  e1cddbc
- feat: modality fallback + BIDS format whitelist + view/laterality/bodypart
  
  robert-graf
  and
  claude
  committed
  5280eb8
- Merge branch 'main' of github.com:Hendrik-code/TPTBox
  robert-graf
  committed
  371757e
- Merge branch 'main' into Point-Reg
  robert-graf
  committed
  ab7dded
- fix: silently return None from get_plane_dicom on AttributeError
  
  robert-graf
  and
  claude
  committed
  45a152a
- fix: reject single DICOMs without usable pixel_array
  
  robert-graf
  and
  claude
  committed
  5cb4c49
- fix: treat unreadable JSON as name conflict in test_name_conflict
  
  robert-graf
  and
  claude
  committed
  4c616bd
- feat: route non-imaging DICOM modalities to .txt sidecar
  
  robert-graf
  and
  claude
  committed
  2ae0ce2
- fix: keep JSON + dump text on pixel-less single DICOM
  
  robert-graf
  and
  claude
  committed
  a0027c0
- fix: replace unreadable JSON in test_name_conflict instead of renaming around it
  
  robert-graf
  and
  claude
  committed
  c6c8452
- fix: dump DICOM header when ContentSequence walker finds nothing
  
  robert-graf
  and
  claude
  committed
  6c1c31a
- feat: skip Presentation State DICOMs by default via skip_formats
  
  robert-graf
  and
  claude
  committed
  b29a956
- style: fix pre-existing ruff violations in _load_nako_wh.py
  
  robert-graf
  and
  claude
  committed
  d3a235e
- style fixes by ruff
  
  robert-graf
  authored and
  github-actions[bot]
  committed
  4163690
- Merge branch 'dicom-extract-cleanup' of github.com:Hendrik-code/TPTBox into dicom-extract-cleanup
  robert-graf
  committed
  3921ede
- fix: widen silent-catch in get_plane_dicom to any not-a-DICOM-list input
  
  robert-graf
  and
  claude
  committed
  e1b4ac6
- feat: dicom_renamer — re-derive BIDS names from sidecar JSONs
  
  robert-graf
  and
  claude
  committed
  685780e
- feat: three more series-description rules for TOF-MRA / DCE / neck angio
  
  robert-graf
  and
  claude
  committed
  7b162fb
- feat: renamer re-run safety + orphan cleanup pass
  
  robert-graf
  and
  claude
  committed
  163049b
- MIP classification
  robert-graf
  committed
  e434436
- style fixes by ruff
  
  robert-graf
  authored and
  github-actions[bot]
  committed
  1763966
- Merge branch 'dicom-extract-cleanup' of github.com:Hendrik-code/TPTBox into dicom-extract-cleanup
  robert-graf
  committed
  9c5980d
- add MIP/DIR
  robert-graf
  committed
  dbcfb54
- _leftover_move_plan sees ses
  robert-graf
  committed
  f42f938
- keep mapping after rerun
  robert-graf
  committed
  cff552b
- xa apring
  robert-graf
  committed
  c9cfc73
Commits on Oct 13, 2026
- Merge branch 'main' into dicom-extract-cleanup
  Hendrik-code
  authored
  e592018

Commits

Commits on Aug 26, 2026

Commits on Aug 31, 2026

Commits on Sep 2, 2026

Commits on Sep 8, 2026

Commits on Sep 13, 2026

Commits on Sep 14, 2026

Commits on Sep 15, 2026

Commits on Oct 13, 2026