Add Nature Plants and EurekAlert forest news highlights

.github/workflows/deploy.yml

@@ -63,20 +63,15 @@ on:
 
 permissions:
   contents: read
-  pages: write
-  id-token: write
 
 concurrency:
-  group: pages
+  group: ${{ github.event_name == 'pull_request' && format('pages-pr-{0}', github.event.pull_request.number) || 'pages' }}
   cancel-in-progress: true
 
 jobs:
-  deploy:
+  build:
     # available images: https://github.com/actions/runner-images#available-images
     runs-on: ubuntu-latest
-    environment:
-      name: github-pages
-      url: ${{ steps.deployment.outputs.page_url }}
     steps:
       - name: Checkout 🛎️
         uses: actions/checkout@v4
@@ -111,13 +106,25 @@ jobs:
       - name: Prepare static publish marker
         run: |
           touch _site/.nojekyll
-      - name: Setup Pages
-        uses: actions/configure-pages@v5
       - name: Upload Pages artifact
+        if: github.event_name != 'pull_request'
         uses: actions/upload-pages-artifact@v3
         with:
           path: _site
+
+  deploy:
+    if: github.event_name != 'pull_request'
+    needs: build
+    runs-on: ubuntu-latest
+    permissions:
+      pages: write
+      id-token: write
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    steps:
+      - name: Setup Pages
+        uses: actions/configure-pages@v5
       - name: Deploy 🚀
         id: deployment
-        if: github.event_name != 'pull_request'
         uses: actions/deploy-pages@v4

.prettierignore

@@ -11,3 +11,6 @@ _sass/font-awesome/*.scss
 _scripts/*
 # Ignore citation YAML file generated by script
 _data/citations.yml
+_data/people.yml
+agents/prompt_log.md
+chat_provenance_log.md

CUSTOMIZE.md

@@ -62,7 +62,7 @@ Here we will give you some tips on how to customize the website. One important t
     - [How it works](#how-it-works)
     - [Configuration](#configuration-1)
     - [Disable related posts for a specific post](#disable-related-posts-for-a-specific-post)
-    - [Additional configuration in _config.yml](#additional-configuration-in-_configyml)
+    - [Additional configuration in \_config.yml](#additional-configuration-in-_configyml)
   - [Managing publication display](#managing-publication-display)
   - [Adding a Google Calendar](#adding-a-google-calendar)
     - [Basic usage](#basic-usage)

_includes/cv/publications.liquid

@@ -36,7 +36,8 @@
             {% if entry.authors %}
               <p class="ml-1 ml-md-4 mb-1" style="font-size: 0.9rem;">
                 {% for author_line in entry.authors %}
-                  {{ author_line }}{% unless forloop.last %}<br>{% endunless %}
+                  {{ author_line -}}
+                  {%- unless forloop.last %}<br>{% endunless %}
                 {% endfor %}
               </p>
             {% endif %}
@@ -64,7 +65,8 @@
             {% if entry.authors %}
               <p class="ml-1 ml-md-4 mb-1" style="font-size: 0.9rem;">
                 {% for author_line in entry.authors %}
-                  {{ author_line }}{% unless forloop.last %}<br>{% endunless %}
+                  {{ author_line -}}
+                  {%- unless forloop.last %}<br>{% endunless %}
                 {% endfor %}
               </p>
             {% endif %}

_pages/news.md

@@ -51,11 +51,13 @@ _styles: |
       <div class="news-feature__body">
         <div class="news-meta">February 2026</div>
         <h3 class="news-title"><span class="news-source">ScienceDaily</span><a href="https://www.sciencedaily.com/releases/2026/02/260208233836.htm" target="_blank" rel="noopener">Forests are changing fast and scientists are deeply concerned</a></h3>
-        <p class="news-feature__note">New evidence that forest composition and function are shifting at rates that outpace our monitoring systems - and our current conservation frameworks.</p>
+        <p class="news-feature__note">Coverage of Guo et al. (2026) on tree traits, naturalization, and extinction risk. The Nature Plants briefing and Aarhus University release below cover the same study.</p>
       </div>
     </article>
     <div class="news-theme__cards">
       <article class="news-card"><div><div class="news-meta">April 2026</div><h3 class="news-title"><span class="news-source">Phys.org</span><a href="https://phys.org/news/2026-04-ease-food-energy-biodiversity-conflicts.html" target="_blank" rel="noopener">Easing food, energy, and biodiversity conflicts</a></h3></div><img src="https://scx2.b-cdn.net/gfx/news/hires/2026/integrated-land-planni.jpg" alt="Integrated land planning for food, energy, and biodiversity" loading="lazy"></article>
+      <article class="news-card"><div><div class="news-meta">February 3, 2026</div><h3 class="news-title"><span class="news-source">Nature Plants | Research Briefing</span><a href="https://www.nature.com/articles/s41477-025-02213-4" target="_blank" rel="noopener">Fast-growing alien trees surge as slow native species decline worldwide</a></h3><p>Research briefing on <a href="https://www.nature.com/articles/s41477-025-02207-2" target="_blank" rel="noopener">Guo et al. (2026)</a>.</p></div><img src="https://www.sciencedaily.com/images/1920/forest-from-above.webp" alt="Forest canopy viewed from above" loading="lazy"></article>
+      <article class="news-card"><div><div class="news-meta">January 28, 2026</div><h3 class="news-title"><span class="news-source">Aarhus University | EurekAlert!</span><a href="https://www.eurekalert.org/news-releases/1114183" target="_blank" rel="noopener">Fast-growing trees are taking over the forests of the future and putting biodiversity and climate resilience under pressure</a></h3><p>University news release on the same study.</p></div><img src="https://www.sciencedaily.com/images/1920/forest-from-above.webp" alt="Forest canopy viewed from above" loading="lazy"></article>
       <article class="news-card"><div><div class="news-meta">April 2022</div><h3 class="news-title"><span class="news-source">New York Times</span><a href="https://www.nytimes.com/2022/04/14/climate/cactus-climate-change.html" target="_blank" rel="noopener">Climate Change Could Devastate Cacti, Researchers Fear</a></h3></div><img src="https://scx2.b-cdn.net/gfx/news/hires/2022/cactus.jpg" alt="Cactus in desert" loading="lazy"></article>
       <article class="news-card"><div><div class="news-meta">March 2022</div><h3 class="news-title"><span class="news-source">EurekAlert!</span><a href="https://www.eurekalert.org/news-releases/948375" target="_blank" rel="noopener">Increased heat and drought stunt tropical trees, a major carbon sink</a></h3></div><img src="https://mediasvc.eurekalert.org/Api/v1/Multimedia/50c57d87-c88b-4825-881f-9993bf451d7b/Rendition/thumbnail/Content/Public" alt="Tropical tree affected by heat and drought" loading="lazy"></article>
       <article class="news-card"><div><div class="news-meta">September 2021</div><h3 class="news-title"><span class="news-source">Phys.org</span><a href="https://phys.org/news/2021-09-droughtmore-temperaturegoverns-diversity-life-earth.html" target="_blank" rel="noopener">Drought&mdash;more than temperature&mdash;governs diversity of life on Earth</a></h3></div><img src="https://scx2.b-cdn.net/gfx/news/hires/2021/drought.jpg" alt="Drought and plant diversity" loading="lazy"></article>

_posts/2026-06-25-enquist-lab-research-identity.md

@@ -35,15 +35,15 @@ The lab includes graduate students, postdoctoral researchers, and undergraduate
 
 ## Key Resources
 
-| Resource | Link |
-|---|---|
-| Lab Homepage | [enquistlab.github.io](https://enquistlab.github.io/) |
-| About Brian J. Enquist | [/about/](https://enquistlab.github.io/about/) |
-| Publications | [/publications/](https://enquistlab.github.io/publications/) |
-| CV | [/cv/](https://enquistlab.github.io/cv/) |
-| ORCID | [0000-0002-6124-7096](https://orcid.org/0000-0002-6124-7096) |
-| Google Scholar | [Brian J. Enquist](https://scholar.google.com/citations?hl=en&user=mAbA6EoAAAAJ) |
-| GitHub | [github.com/benquist](https://github.com/benquist) |
+| Resource               | Link                                                                             |
+| ---------------------- | -------------------------------------------------------------------------------- |
+| Lab Homepage           | [enquistlab.github.io](https://enquistlab.github.io/)                            |
+| About Brian J. Enquist | [/about/](https://enquistlab.github.io/about/)                                   |
+| Publications           | [/publications/](https://enquistlab.github.io/publications/)                     |
+| CV                     | [/cv/](https://enquistlab.github.io/cv/)                                         |
+| ORCID                  | [0000-0002-6124-7096](https://orcid.org/0000-0002-6124-7096)                     |
+| Google Scholar         | [Brian J. Enquist](https://scholar.google.com/citations?hl=en&user=mAbA6EoAAAAJ) |
+| GitHub                 | [github.com/benquist](https://github.com/benquist)                               |
 
 ## Contact and Collaboration
 

chat_provenance_log.md

@@ -655,3 +655,23 @@ Commit: 79373d6a → EnquistLab/enquistlab.github.io main.
     Prompt: Can you add his photo? His pohoto is on the website already as a lab affiliate
     Outcome: Added an exact-name mapping in _data/alumni_photos.yml to /assets/img/team/michiel_mich_pillet.jpg, reusing the existing staff portrait without modifying the image, staff profile, biography, or degree information. The unrelated _pages/news.md changes were left untouched.
     Validation: YAML uniqueness and image-existence assertions, scoped Prettier check, editor diagnostics, and actual graduate-card Liquid rendering passed. The first rendering harness lacked Jekyll's filter-cache context and failed; supplying that context resolved the test failure. Full local notebook build was not rerun. Publication of the photo remains pending at this entry.
+
+## 2026-10-08 - News source correction and local preview
+Prompt: "Yes, lets proceed" (approve source verification, correction, and local preview without pushing); followed by "update".
+Outcome: Confirmed this repository targets EnquistLab/enquistlab.github.io. Added Nature Plants research-briefing and Aarhus University/EurekAlert cards to _pages/news.md; retained ScienceDaily and clarified that all three cover the same Guo et al. study. Earlier drafts in enquistlab-academic-site are not the deployment source and were not modified in this correction. Preserved unrelated branch and provenance changes.
+Validation: Source DOM assertions passed for both links, dates, section placement, and retained ScienceDaily. Full production Jekyll build passed in 27.614 seconds using Homebrew Ruby 3.3, Bundler 4.0.4 and Library/Python/3.9/bin on PATH; initial attempt failed because jupyter was absent from PATH. Browser checks on the rendered local page at 390px and 1440px found both cards visible, images loaded, and no card or page horizontal overflow. Two unrelated older external thumbnails were blocked by the browser. Local preview: http://127.0.0.1:4001/news/. No commit, push, or deployment performed for this update. Full session transcript archival remains unverified.
+
+## 2026-10-08 - Authorized news commit and push
+Prompt: "comit and push".
+Preparation: Created copilot/add-forest-news-20261008 from refreshed origin/main. Scoped scholarly review passed: press headlines, dates, and study citation verified; the unsupported monitoring claim is removed. Scoped Prettier check passed. Only the news page and its provenance entries are selected for this commit; the unrelated alumni publication follow-up remains outside this commit. This entry records authorization and preparation, not a completed push or deployment. Full session transcript archival remains unverified.
+
+## 2026-10-11 - Live news publication authorized
+Prompt: "Lets go with your reocmmendation. Lets update the live site".
+Action: Opened https://github.com/EnquistLab/enquistlab.github.io/pull/4 for branch commit 0794f98f240d2ac97a7a27498607b5437a15bce7, previously pushed and verified. CI is pending before merge. This local entry does not claim deployment or public-page verification; outcomes will be appended after execution. Unrelated local changes remain untouched.
+
+Publication blocked: PR #4 deploy check (run 38131062536) was rejected before any steps: Branch "refs/pull/4/merge" is not allowed to deploy to github-pages due to environment protection rules. Formatter run 38131062539 failed on _data/people.yml, _includes/cv/publications.liquid, _posts/2026-06-25-enquist-lab-research-identity.md, agents/prompt_log.md, chat_provenance_log.md, CUSTOMIZE.md, and google8589e3b602b5c62f.html. The news page was not flagged. No merge, deployment, environment-rule change, or unrelated formatting repair performed. Approval is required to expand scope to CI repair; protected agent-log rewrites additionally require explicit per-file permission.
+
+## 2026-10-11 - Authorized CI repair and publication retry
+Prompt: "please push them please. I approve the separate CI repair".
+Changes: Separated read-only PR builds from the dependent non-PR production deploy job, retaining the github-pages environment protections and isolating PR concurrency. Excluded exact append-only provenance logs and generated _data/people.yml from Prettier, consistent with the existing generated citations exclusion. Formatted four remaining flagged files without prose changes; no protected agent files rewritten.
+Validation: Workflow structure assertions and editor diagnostics passed; repository-wide Prettier check passed; production Jekyll build passed in 42.013 seconds using the previously verified native toolchain. Git diff --check passed. This entry records the repair and local verification; remote CI, merge, deployment, and live verification remain pending. Unrelated local provenance retained outside the commit. Full transcript archival remains unverified.

google8589e3b602b5c62f.html

@@ -1 +1 @@
-google-site-verification: google8589e3b602b5c62f.html
+google-site-verification: google8589e3b602b5c62f.html