Earlham Institute
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earlham-galaxytools
earlham-galaxytools PublicGalaxy tools and workflows developed at the Earlham Institute
Repositories
- pocket-nebula Public Forked from aioue/pocket-nebula
Dev Container for OpenNebula Administration (CLI + Ansible)
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- COPO-production Public
COPO is a Django-based platform that serves as a metadata broker to describe research data per FAIR principles. It supports community-recognised metadata standards, ensuring data is discoverable, interoperable, and accessible. Submitted data is accessible via public repositories, promoting long-term preservation and reuse across systems.
- Scraper_sc Public
This project automates the extraction of structured metadata from scientific papers in PDF format. Using the OpenAI GPT model, it populates a standardised Excel workbook with metadata for single-cell RNA-seq studies. Each PDF is parsed and its contents used to fill out the appropriate fields across multiple Excel sheets, one per metadata category.
- HumanVsGPT Public
How closely does a language model reproduce a human curator's reading of a scientific paper? Comparison of human- and GPT-extracted metadata manifests for 21 single-cell plant genomics papers.
- COPO-schemas Public
This repository provides a collection of schemas, or data objects, for representing different types of metadata.
- COPO-documentation Public
COPO documentation was created using the Sphinx reStructuredText (reST) markup language which is hosted on readthedocs.io. The documentation uses Sphinx.
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