Issues

• Functionality has drifted considerably from the readme

  CefasRepRes/flowcytometertool#54 · Filter by author JoeRibeiro opened on Mar 17, 2026

• Stop saving as .pkl

  CefasRepRes/flowcytometertool#53 · Filter by author JoeRibeiro opened on Mar 17, 2026

• calibrated model does not load

  CefasRepRes/flowcytometertool#52 · Filter by author JoeRibeiro opened on Mar 16, 2026

• remove relict download cyz2json button

  CefasRepRes/flowcytometertool#51 · Filter by author JoeRibeiro opened on Mar 16, 2026

• Non numeric fields can sneak into training df and break the training function

  CefasRepRes/flowcytometertool#50 · Filter by author JoeRibeiro opened on Mar 13, 2026

• Health checks should include wavelengths

  CefasRepRes/flowcytometertool#47 · Filter by author JoeRibeiro opened on Mar 12, 2026

• Consensual dataset combination function is changing underlying dataset

  CefasRepRes/flowcytometertool#43 · Filter by author JoeRibeiro opened on Feb 9, 2026
  2

• Multiprocessing only works if running from the command (conda) prompt

  CefasRepRes/flowcytometertool#41 · Filter by author JoeRibeiro opened on Jul 11, 2025

• Speeding up the watcher

  CefasRepRes/flowcytometertool#40 · Filter by author JoeRibeiro opened on Jun 20, 2025

• Checks like 1:1 ratio for left to right indicates if calibration has been done

  CefasRepRes/flowcytometertool#38 · Filter by author JoeRibeiro opened on Jun 19, 2025
  5

• A refactor is needed. The code has become very bloated

  CefasRepRes/flowcytometertool#31 · Filter by author JoeRibeiro opened on Jun 11, 2025

• In actions workflow, the old version of test_classifier is still being used rather than lucinda's function as used in "predict test set"

  CefasRepRes/flowcytometertool#29 · Filter by author JoeRibeiro opened on Jun 9, 2025

• Is there a way to make the model "more permissive of some classes"

  enhancement
  CefasRepRes/flowcytometertool#26 · Filter by author JoeRibeiro opened on Jun 5, 2025
  1

• seasonality in the training dataset - convert month as a predictor column?

  wontfix
  CefasRepRes/flowcytometertool#25 · Filter by author JoeRibeiro opened on Jun 5, 2025
  2

• Some kind of circular review process is needed

  enhancement
  CefasRepRes/flowcytometertool#24 · Filter by author JoeRibeiro opened on Jun 5, 2025

• F1, precision and accuracy plot is one to add

  Nice to have
  CefasRepRes/flowcytometertool#23 · Filter by author JoeRibeiro opened on Jun 5, 2025

• No combined axes defined

  wontfix
  CefasRepRes/flowcytometertool#21 · Filter by author JoeRibeiro opened on Jun 5, 2025
  1

• I have changed hyperparameters like the number of folds

  important
  CefasRepRes/flowcytometertool#20 · Filter by author JoeRibeiro opened on Jun 5, 2025

• there needs to be a way to visualise consensus between labellers, and pinpoint disagreements,

  enhancement
  CefasRepRes/flowcytometertool#19 · Filter by author JoeRibeiro opened on Jun 5, 2025
  1

• Metadata process

  important
  CefasRepRes/flowcytometertool#18 · Filter by author JoeRibeiro opened on Jun 5, 2025

• "Remaining challenges" - ongoing research

  wontfix
  CefasRepRes/flowcytometertool#17 · Filter by author JoeRibeiro opened on Jun 5, 2025

• Command line needs to be piped to the app interface

  CefasRepRes/flowcytometertool#12 · Filter by author JoeRibeiro opened on Jun 4, 2025
  1

• A nice to have would be to have a tab for local file processing with no blob inreraction

  Nice to have
  CefasRepRes/flowcytometertool#7 · Filter by author JoeRibeiro opened on Jun 2, 2025

• Implement a lifeform indicator

  enhancement
  CefasRepRes/flowcytometertool#6 · Filter by author JoeRibeiro opened on Jun 2, 2025