Skip to content
@ArcInstitute

Arc Research Institute

Popular repositories Loading

  1. evo2 evo2 Public

    Genome modeling and design across all domains of life

    Jupyter Notebook 4.2k 555

  2. state state Public

    State is a machine learning model that predicts cellular perturbation response across diverse contexts

    Python 678 161

  3. arc-virtual-cell-atlas arc-virtual-cell-atlas Public

    Arc Virtual Cell Atlas

    Jupyter Notebook 590 61

  4. SRAgent SRAgent Public

    LLM agents for working with the SRA and associated bioinformatics databases.

    Python 181 35

  5. stack stack Public

    Stack is a single-cell foundation model that enables in-context learning at inference time.

    Jupyter Notebook 162 19

  6. cell-eval cell-eval Public

    Comprehensive suite for evaluating perturbation prediction models

    Python 157 51

Repositories

Showing 10 of 40 repositories
  • ScreenPro2 Public

    Flexible analysis of high-content CRISPR screening

    ArcInstitute/ScreenPro2's past year of commit activity
    Python 33 7 12 (1 issue needs help) 1 Updated Sep 11, 2026
  • arc-cluster-toolkit Public Forked from GoogleCloudPlatform/cluster-toolkit

    Cluster Toolkit is an open-source software offered by Google Cloud which makes it easy for customers to deploy AI/ML and HPC environments on Google Cloud.

    ArcInstitute/arc-cluster-toolkit's past year of commit activity
    HCL 2 Apache-2.0 332 0 0 Updated Sep 10, 2026
  • cellstream Public

    Compressed per-cell storage for large single-cell AnnData, built for scattered random access

    ArcInstitute/cellstream's past year of commit activity
    Python 1 MIT 0 0 0 Updated Sep 5, 2026
  • cyto Public

    A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries

    ArcInstitute/cyto's past year of commit activity
    Rust 49 BSD-3-Clause 3 10 1 Updated Sep 2, 2026
  • arc-virtual-cell-atlas Public

    Arc Virtual Cell Atlas

    ArcInstitute/arc-virtual-cell-atlas's past year of commit activity
    Jupyter Notebook 590 61 1 0 Updated Aug 29, 2026
  • binseq Public

    A high efficiency binary format for sequencing data

    ArcInstitute/binseq's past year of commit activity
    Rust 107 8 6 1 Updated Aug 26, 2026
  • pdex Public

    parallel differential expression for single-cell perturbation sequencing

    ArcInstitute/pdex's past year of commit activity
    Python 30 MIT 11 3 2 Updated Aug 26, 2026
  • bqtools Public

    A command line utilty for working with BINSEQ files

    ArcInstitute/bqtools's past year of commit activity
    Rust 40 MIT 3 7 0 Updated Aug 25, 2026
  • cell-eval2 Public

    GPU-accelerated evaluation of perturbation prediction models

    ArcInstitute/cell-eval2's past year of commit activity
    Python 21 MIT 2 0 0 Updated Aug 22, 2026
  • gpudge Public

    Lightweight GPU-only Mann–Whitney U differential expression for single-cell CRISPR perturbation screens

    ArcInstitute/gpudge's past year of commit activity
    Python 4 MIT 0 0 0 Updated Aug 21, 2026