All pull requests

Pull requests

• document reproducibility records for ANGSD analyses

  #674·thierrygosselin opened Sep 9, 2026·

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• Validate BCF contig identifiers before writing

  #673·thierrygosselin opened Sep 9, 2026·

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• Return failure status for invalid SAF indexes

  #672·thierrygosselin opened Sep 9, 2026·

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• Document reference and ancestral-allele requirements

  #671·thierrygosselin opened Sep 9, 2026·

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• Return failure status for incompatible SFS dimensions

  #670·thierrygosselin opened Sep 9, 2026·

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• Return failure status for invalid SAF likelihoods

  #669·thierrygosselin opened Sep 9, 2026·

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• Reject stale site indexes

  #668·thierrygosselin opened Sep 9, 2026·

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• Document ANGSD VCF allele convention

  #667·thierrygosselin opened Sep 9, 2026·

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• Validate genotype-likelihood error-matrix input

  #666·thierrygosselin opened Sep 9, 2026·

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• Handle zero-depth genotypes in allele-balance filtering

  #665·thierrygosselin opened Sep 9, 2026·

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• Return failure status for GL validation errors

  #664·thierrygosselin opened Sep 9, 2026·

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• Write the correct formula for the Watterson estimator of theta in the doc

  #645·Gullumluvl opened Jan 20, 2025·

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• Makefile: specify version.h as a dependency of all object files

  #590·trofi opened Aug 20, 2023·

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• add a LICENSE (GPL 2)

  #379·stephenturner opened Feb 9, 2021·

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• Bgen madness

  #319·e-jorsboe opened May 27, 2020Collaborator·

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• added mutual information via whichFst

  #208·nspope opened Mar 6, 2019Contributor·

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  2