diff --git a/CHANGELOG.md b/CHANGELOG.md index fe5c3f4..39f79fc 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -11,6 +11,61 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/). ## [Unreleased] +## [v1.5] - 2026-10-19 + +Corrections from a full review of all 2,076 rows of v1.4 (the first review of the whole file; earlier releases reviewed only the rows in each batch of changes). Target concepts change on 10 rows, qualifier concepts on 2 rows and field names on 5 answer rows, so the ETL must be re-run to apply these changes. All edits are in place: no rows are added or removed, so every line number is the same as in v1.4. Concept IDs and names for the new standard concepts were confirmed in the deployed OMOP vocabulary (Databricks `omop_vocab`). + +### Changed — target concept + +- Health history, "Has a doctor or other healthcare professional ever told you that you have/had…": two "Yes" answers moved from AI-READI custom concepts to standard SNOMED conditions, so standard OHDSI cohorts find these participants. As in v1.3, the matching question row's `MODIFIER`, `qualifier_concept_id` and `qualifier_source_value` change with the answer, so OBSERVATION and CONDITION_OCCURRENCE carry the same concept. + - `mhoccur_strk` "Stroke" (answer line 340, question line 293): custom 2005200628 → 381316 Cerebrovascular accident (SNOMED 230690007), exactMatch 1. + - `mhoccur_rnl` "Kidney problems" (answer line 392, question line 310): custom 2005200017 → 198124 Kidney disease (SNOMED 90708001), closeMatch 0.75. "Kidney problems" is a lay umbrella term, so the match is to the broad parent, as for `mhoccur_ua` in v1.3. + - Custom concepts 2005200628 and 2005200017 are no longer referenced but are kept in `concept_manual.csv` (IDs are not reused). +- `susmkdosfr` "31-40 (up to 2 packs)" (line 1923), answer to "On average how many cigarettes do/did you usually smoke in a day?": 45884478 *31 or more (3 points)* (LOINC LA15915-4, closeMatch 1) → new AI-READI custom concept **2005200636** *31-40 (up to 2 packs)*, exactMatch 1. The LOINC answer means 31 or more, but the map used it only for 31–40 while 41–50 and >50 use custom concepts 2005200194 and 2005200195, so a query on 45884478 missed the heaviest smokers. In the current OMOP survey data this affects 41 participants (31–40); 18 more are in the 41–50 and >50 ranges. +- `cm_asp`, `cm_act`, `cm_ibp`, `cm_ant`, `cm_dcg`, `cm_slp` answer "A few days (<1 day/week)" (lines 690, 697, 704, 711, 718, 725), answers to "Have you taken [aspirin, acetaminophen, ibuprofen, antihistamines, decongestants, sleeping pills] in the past 2 weeks?": 45884557 *Less than a day* (LOINC LA14482-6, a duration answer, closeMatch 0.75) → 36210209 *Less than once a week* (LOINC LA27722-0, a frequency answer), exactMatch 1. +- `cmroute` question "How is it taken? (ex. oral, cream, injection, etc.)" (line 331, protected field): 44786711 *Dose form – RxNorm RXCUI of Medication* (LOINC 74054-8, closeMatch 0.75) → 0, with `MODIFIER` "No matching concept; answers populate DRUG_EXPOSURE.route_concept_id". The question asks for a route, not a dose form; since v1.4 the answers map to SNOMED Route concepts. + +### Fixed — answer field names + +Two answer sets used a `FIELD_ID` that does not exist in REDCap, so the ETL could not link those answers to their question and wrote `value_as_concept_id` = 0. Confirmed in the current OMOP survey data. +- `pdrx9` "On a scale of 1-6, how stressful was this for you?" (racial/ethnic discrimination survey; question line 1052): answers on lines 1149–1151 (1 "Not at all stressful", 6 "Extremely stressful", 777 "Prefer not to say") had `FIELD_ID` `pxrd9` → `pdrx9` (`SRC_CODE_ID` `pxrd9_1` → `pdrx9_1`, etc.). The REDCap field name is `pdrx9`. All 1,896 `pdrx9` rows currently have concept 0. +- `pxne9` (neighborhood environment survey): answers on lines 994–995 (555 "Don't know/Not sure", 777 "Prefer not to say") had `FIELD_ID` `pxne9_` → `pxne9` (`SRC_CODE_ID` `pxne9__555` → `pxne9_555`, etc.). 71 `pxne9` rows currently have concept 0. + +### Added + +- AI-READI custom concept 2005200636 "31-40 (up to 2 packs)" (Meas Value, Answer) in `OHDSI-vocabulary-request/concept_manual.csv` and `AI-READI-Vocabulary/concept_manual_AIREADI.csv` (now 334 concepts; 418 in total), with a broadMatch to 45884478 *31 or more (3 points)* in `concept_relationship_manual.csv`. +- Release audit scripts in `redCapDataDictionaryWithExtension/scripts/`, to run before every release: + - `audit_concept_map.py`: structural checks (custom targets present in `concept_manual.csv` with matching name and domain; one name, domain, vocabulary and code per concept ID; standard flags; predicate and confidence rules; duplicate keys; hidden spaces; custom Condition targets; answer rows whose `FIELD_ID` matches no question row) and review lists (answers whose text differs from the target name; questions mapped to standard concepts; "Other" rows). Writes a Markdown report. Runs on the CSV (with line numbers) or, in Databricks, on the loaded tables with `run_audit_table()`. Standard library only. + - `validate_concept_map_vocab.sql` (Databricks): checks every target, value and qualifier concept against `omop_vocab` (exists, standard, valid; name, domain, vocabulary and code match; unit and route domains), the same structural checks on the loaded table, and lookups. + +### Changed — metadata + +- `PREDICATE_ID`/`CONFIDENCE` for the "Other (please specify)" questions `scrsexot` (line 20) and `ethnicot` (line 22), exactMatch 1, and `raceot` (line 25), closeMatch 1 → closeMatch 0.75, matching `cl_maristatot` (line 45, changed in v1.3.1). A free-text "other" field is not the question itself. + +### Fixed + +- `TARGET_CONCEPT_CODE` 118575009 removed from 32 survey timestamp rows mapped to custom concepts 2005200558 (Survey Started Timestamp) and 2005200559 (Survey Completed Timestamp); custom concepts have no code, and 2 rows (931, 932) were already blank. +- Hidden characters: leading space removed from `MODIFIER` on lines 868 and 869 (`paate_6hr`, " 6 hours | 4048382" → "6 hours | 4048382"). The v1.3.1 clean-up removed non-breaking spaces but did not check `MODIFIER` for ordinary leading spaces. +- `AI-READI-Vocabulary/README.md`: lists the retirement of 2005200222 "Puff" (v1.4, not recorded there in v1.4) and the addition of 2005200636. +- `codemeta.json`: `dateModified` updated (was 2026-10-16). + +### Regenerated + +- map2omop (2,075 rows) and open-source public (1,966) versions, SSSOM (2,000 rows; 76 incomplete, +1 for `cmroute` → 0) and LinkML from the v1.5 common file. `unit_concept_lookup.csv` (110 rows) and `medication_route_lookup.csv` (26 rows) checked against the map: unchanged. +- Counts (`run_counts.py`): standard 1,479 (391 concepts); custom 487 (342); mapped 1,966 (733); designated but unmapped 110. Expected values in `count_concept_map.sql` updated to v1.5. + +### Reviewed and not changed + +- `dmlpor` question (line 147, *Able to control portion size*, closeMatch 0.75): describes ability rather than approach, but no better standard concept exists and the answers are exact custom concepts. +- `moca_total_score` (line 647, *Montreal Cognitive Assessment version 8.1*): the study used MoCA 8.1. +- Custom "Other heart issues" (337), "Circulation problems" (343) and "Elevated A1C levels" (1869): no single standard concept covers these grouped questions; elevated A1C to be reviewed again. +- `susmkdosfr` question (line 1888, 40769208 *How many of these do you smoke per day [#] [PhenX]*, LOINC 66548-9): 63640-7 *How many cigarettes per day do, or did, you smoke* (40766364) matches the wording and owns the 21–30 answer list, but it is a nominal (range) question, while most AI-READI answers are counts from 1 to 20, which suit the quantitative 66548-9. Kept. +- `pxrd52`/`pxrd53` "How different would your life be now…" (lines 1390–1402): the 6-point answers map to three LOINC answers (*About the same*, *Slight change*, *Major change*), closeMatch 0.75. Kept: the current OMOP data keeps the exact answer code (1–6) in `value_as_number`, so no detail is lost. + +### Not yet included + +- CBC method-specific LOINC codes (hematocrit 20570-8 *by calculation* vs 4544-3 *by Automated count*): waiting on the performing labs. + ## [v1.4] - 2026-10-19 Adds unit mappings and corrects medication route and dose-unit answers. Target concepts change on 18 rows, source codes on 4 rows, and 72 rows are added, so the ETL must be re-run to apply these changes. All new rows are appended at the end of the file (lines 2006–2077), so every existing row keeps its v1.3.1 line number. Unit rows are matched by `FIELD_ID` (e.g. `import_potassium_u`) or by the unit text in `SRC_CODE`, not by position. diff --git a/CITATION.cff b/CITATION.cff index 784244f..238590e 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -16,7 +16,7 @@ repository-code: "https://github.com/AI-READI/DataElementMaps" repository-artifact: "https://github.com/AI-READI/DataElementMaps/blob/main/manuscript-tvst2026/ai_readi_redcap_value_set_mapping_common.csv" url: "https://aireadi.org" license: MIT -version: "v1.4" +version: "v1.5" date-released: "2026-10-19" identifiers: - type: doi diff --git a/codemeta.json b/codemeta.json index 24ed964..068940b 100644 --- a/codemeta.json +++ b/codemeta.json @@ -7,11 +7,11 @@ "codeRepository": "https://github.com/AI-READI/DataElementMaps", "downloadUrl": "https://github.com/AI-READI/DataElementMaps", "issueTracker": "https://github.com/AI-READI/DataElementMaps/issues", - "version": "v1.4", + "version": "v1.5", "datePublished": "2026-10-19", - "releaseNotes": "Concept map v1.4: adds unit mappings (12 unit-lookup strings; globulin and bilirubin units), maps medication route answers to SNOMED Route concepts and dose-unit answers to UCUM units, and retires custom concept 2005200222. ETL re-run required. See CHANGELOG.md.", + "releaseNotes": "Concept map v1.5: maps stroke and kidney disease to standard SNOMED concepts, separates the 31-40 cigarettes-per-day answer from the LOINC \"31 or more\" answer (new custom concept 2005200636), maps \"less than once a week\" medication-use answers to LOINC LA27722-0, sets the medication route question to 0, cleans metadata, and adds release audit scripts. ETL re-run required. See CHANGELOG.md.", "dateCreated": "2023-06-28", - "dateModified": "2026-10-16", + "dateModified": "2026-10-19", "applicationCategory": "Scientific", "developmentStatus": "active", "isPartOf": "https://aireadi.org/", diff --git a/redCapDataDictionaryWithExtension/OHDSI-vocabulary-request/AI-READI-Vocabulary/README.md b/redCapDataDictionaryWithExtension/OHDSI-vocabulary-request/AI-READI-Vocabulary/README.md index 744398c..7f5dcf3 100644 --- a/redCapDataDictionaryWithExtension/OHDSI-vocabulary-request/AI-READI-Vocabulary/README.md +++ b/redCapDataDictionaryWithExtension/OHDSI-vocabulary-request/AI-READI-Vocabulary/README.md @@ -8,13 +8,13 @@ | `concept_manual_AIREADI-Vision.csv` | 54 | | `concept_manual_AIREADI-MOCA.csv` | 30 | -These files were generated on 2026-10-18 (concept map release v1.3.1) from `../concept_manual.csv`, split by `vocabulary_id`. Together they contain exactly the 418 AI-READI custom concepts in `concept_manual.csv`, with the same columns and values. Regenerate them whenever `concept_manual.csv` changes. +These files were regenerated on 2026-10-19 (concept map release v1.5) from `../concept_manual.csv`, split by `vocabulary_id`. Together they contain exactly the 418 AI-READI custom concepts in `concept_manual.csv`, with the same columns and values. Regenerate them whenever `concept_manual.csv` changes. ## Frozen October 2025 submission The files submitted to the OHDSI Vocabulary Working Group on October 2, 2025 ([Vocabulary-v5.0 issue #1176](https://github.com/OHDSI/Vocabulary-v5.0/issues/1176)) are kept unchanged in `AIREADi_OMOP_Vocabulary_Request/split_concept_manual/` at the repository root. Differences from the current files: -- Retired since the submission (not used in the concept map): 2005200193, 2005200236, 2005200239, 2005200560. -- Added since the submission: 2005200455, 2005200632, 2005200633, 2005200634, 2005200635. +- Retired since the submission (removed from the concept map): 2005200193, 2005200236, 2005200239, 2005200560, and 2005200222 "Puff" (v1.4; also removed from `concept_manual.csv`). +- Added since the submission: 2005200455, 2005200632, 2005200633, 2005200634, 2005200635, 2005200636 (v1.5). - `valid_start_date` now filled (1/1/1970) for 15 MoCA concepts (2005200359–2005200373), and `v6_domain_id` set to `survey_conduct` for 2005200451, 2005200459 and 2005200629. - Non-breaking spaces removed from the names of 2005200027, 2005200037, 2005200093, 2005200096 and 2005200550. diff --git a/redCapDataDictionaryWithExtension/OHDSI-vocabulary-request/AI-READI-Vocabulary/concept_manual_AIREADI.csv b/redCapDataDictionaryWithExtension/OHDSI-vocabulary-request/AI-READI-Vocabulary/concept_manual_AIREADI.csv index 5d14c1a..7cb3731 100644 --- a/redCapDataDictionaryWithExtension/OHDSI-vocabulary-request/AI-READI-Vocabulary/concept_manual_AIREADI.csv +++ b/redCapDataDictionaryWithExtension/OHDSI-vocabulary-request/AI-READI-Vocabulary/concept_manual_AIREADI.csv @@ -332,3 +332,4 @@ Last study visit/stage completed,eos_dsvst,2005200632,AIREADI,Observation,survey "In a typical day, how often do you consume whole grains? (Examples: include whole wheat, brown bread, or brown rice).",dmlgrain,2005200633,AIREADI,Observation,survey_conduct,Survey,,1/1/1970,, Investigator deemed not appropriate for study,eos_dsdecod_5,2005200634,AIREADI,Meas Value,,Answer,,1/1/1970,, Feeling scared when you think about living with diabetes,paid_scrd,2005200635,AIREADI,Observation,survey_conduct,Survey,,1/1/1970,, +31-40 (up to 2 packs),susmkdosfr_31,2005200636,AIREADI,Meas Value,,Answer,,1/1/1970,, diff --git a/redCapDataDictionaryWithExtension/OHDSI-vocabulary-request/concept_manual.csv b/redCapDataDictionaryWithExtension/OHDSI-vocabulary-request/concept_manual.csv index d2785a6..d47b5f2 100644 --- a/redCapDataDictionaryWithExtension/OHDSI-vocabulary-request/concept_manual.csv +++ b/redCapDataDictionaryWithExtension/OHDSI-vocabulary-request/concept_manual.csv @@ -416,4 +416,5 @@ Location of environmental sensor within home,dvenvlocn,2005200631,AIREADI,Observ Last study visit/stage completed,eos_dsvst,2005200632,AIREADI,Observation,survey_conduct,Survey,,1/1/1970,, "In a typical day, how often do you consume whole grains? (Examples: include whole wheat, brown bread, or brown rice).",dmlgrain,2005200633,AIREADI,Observation,survey_conduct,Survey,,1/1/1970,, Investigator deemed not appropriate for study,eos_dsdecod_5,2005200634,AIREADI,Meas Value,,Answer,,1/1/1970,, -Feeling scared when you think about living with diabetes,paid_scrd,2005200635,AIREADI,Observation,survey_conduct,Survey,,1/1/1970,, \ No newline at end of file +Feeling scared when you think about living with diabetes,paid_scrd,2005200635,AIREADI,Observation,survey_conduct,Survey,,1/1/1970,, +31-40 (up to 2 packs),susmkdosfr_31,2005200636,AIREADI,Meas Value,,Answer,,1/1/1970,, \ No newline at end of file diff --git a/redCapDataDictionaryWithExtension/OHDSI-vocabulary-request/concept_relationship_manual.csv b/redCapDataDictionaryWithExtension/OHDSI-vocabulary-request/concept_relationship_manual.csv index 5021c9f..2265c64 100644 --- a/redCapDataDictionaryWithExtension/OHDSI-vocabulary-request/concept_relationship_manual.csv +++ b/redCapDataDictionaryWithExtension/OHDSI-vocabulary-request/concept_relationship_manual.csv @@ -411,3 +411,4 @@ Assessment,2005200626,,AIREADI,,44792407,Assessment,Type Concept,SNOMED,Record A "Other heart issues (Examples: pacemaker, heart valve disease, open heart surgery)",2005200627,,AIREADI,,40770062,History of Problems with your heart or circulation [PhenX],Observation,LOINC,Clinical Observation,67434-1,S,,,,0.75,skos:broadMatch,ManualMapping,ManualMappingCuration,, Stroke,2005200628,,AIREADI,,40770062,History of Problems with your heart or circulation [PhenX],Observation,LOINC,Clinical Observation,67434-1,S,,,,0.75,skos:broadMatch,ManualMapping,ManualMappingCuration,, "Have you had anything to eat or drink in the last six hours, including coffee or tea with milk or sugar or any other drink other than water?",2005200629,,AIREADI,,4060364,Fasting,Observation,SNOMED,Clinical Finding,16985007,S,,,,0.75,skos:broadMatch,ManualMapping,ManualMappingCuration,, +31-40 (up to 2 packs),2005200636,susmkdosfr_31,AIREADI,,45884478,31 or more (3 points),Meas Value,LOINC,Answer,LA15915-4,S,,,,1,skos:broadMatch,ManualMapping,ManualMappingCuration,, diff --git a/redCapDataDictionaryWithExtension/linkml/ai_readi_redcap_value_set_mapping_data.yaml b/redCapDataDictionaryWithExtension/linkml/ai_readi_redcap_value_set_mapping_data.yaml index 0ad5f89..00c7f9c 100644 --- a/redCapDataDictionaryWithExtension/linkml/ai_readi_redcap_value_set_mapping_data.yaml +++ b/redCapDataDictionaryWithExtension/linkml/ai_readi_redcap_value_set_mapping_data.yaml @@ -404,8 +404,8 @@ mappings: target_concept_class_id: Clinical Observation target_concept_code: 76689-9 target_standard_concept: S - predicate_id: skos:exactMatch - confidence: 1.0 + predicate_id: skos:closeMatch + confidence: 0.75 - mapping_record_id: AIREADI_MAPPING_0020 map_to_omop: 'Yes' transferred_to_fairhub_redcap_dataset: 'Yes' @@ -444,8 +444,8 @@ mappings: target_concept_class_id: Clinical Observation target_concept_code: 69854-8 target_standard_concept: S - predicate_id: skos:exactMatch - confidence: 1.0 + predicate_id: skos:closeMatch + confidence: 0.75 - mapping_record_id: AIREADI_MAPPING_0022 map_to_omop: 'Yes' transferred_to_fairhub_redcap_dataset: 'Yes' @@ -498,7 +498,7 @@ mappings: target_concept_code: 46463-6 target_standard_concept: S predicate_id: skos:closeMatch - confidence: 1.0 + confidence: 0.75 - mapping_record_id: AIREADI_MAPPING_0025 map_to_omop: 'Yes' transferred_to_fairhub_redcap_dataset: 'Yes' @@ -1092,7 +1092,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -1138,7 +1137,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -2153,7 +2151,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -2176,7 +2173,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -2275,7 +2271,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -2298,7 +2293,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -3129,7 +3123,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -3152,7 +3145,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -4320,7 +4312,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -4343,7 +4334,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -6103,7 +6093,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -6126,7 +6115,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -6222,9 +6210,9 @@ mappings: target_standard_concept: S predicate_id: skos:exactMatch confidence: 1.0 - modifier: '2005200628' - qualifier_concept_id: 2005200628 - qualifier_source_value: Stroke + modifier: '381316' + qualifier_concept_id: 381316 + qualifier_source_value: Cerebrovascular accident - mapping_record_id: AIREADI_MAPPING_0293 map_to_omop: 'Yes' transferred_to_fairhub_redcap_dataset: 'Yes' @@ -6614,9 +6602,9 @@ mappings: target_standard_concept: S predicate_id: skos:exactMatch confidence: 1.0 - modifier: '2005200017' - qualifier_concept_id: 2005200017 - qualifier_source_value: Kidney problems + modifier: '198124' + qualifier_concept_id: 198124 + qualifier_source_value: Kidney disease - mapping_record_id: AIREADI_MAPPING_0310 map_to_omop: 'Yes' transferred_to_fairhub_redcap_dataset: 'Yes' @@ -6958,7 +6946,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -6981,7 +6968,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -7063,15 +7049,8 @@ mappings: question_or_answer: Question src_code: cmroute src_cd_description: How is it taken? (ex. oral, cream, injection, etc.) - target_concept_id: 44786711 - target_concept_name: Dose form - RxNorm RXCUI of Medication - target_domain_id: Measurement - target_vocabulary_id: LOINC - target_concept_class_id: Clinical Observation - target_concept_code: 74054-8 - target_standard_concept: S - predicate_id: skos:closeMatch - confidence: 0.75 + target_concept_id: 0 + modifier: No matching concept; answers populate DRUG_EXPOSURE.route_concept_id - mapping_record_id: AIREADI_MAPPING_0331 map_to_omop: 'Yes' transferred_to_fairhub_redcap_dataset: 'Yes' @@ -7244,7 +7223,7 @@ mappings: map_to_omop: 'Yes' transferred_to_fairhub_redcap_dataset: 'Yes' protected_or_open_source: open-source - extension_needed: 'Yes' + extension_needed: 'No' form_name: health_survey field_type: radio field_id: mhoccur_strk @@ -7253,12 +7232,12 @@ mappings: src_code: '1' src_code_id: mhoccur_strk_1 src_cd_description: 'Yes' - target_concept_id: 2005200628 - local_concept_id: 2005200628 - target_concept_name: Stroke + target_concept_id: 381316 + target_concept_name: Cerebrovascular accident target_domain_id: Condition - target_vocabulary_id: AIREADI + target_vocabulary_id: SNOMED target_concept_class_id: Disorder + target_concept_code: '230690007' target_standard_concept: S predicate_id: skos:exactMatch confidence: 1.0 @@ -8388,7 +8367,7 @@ mappings: map_to_omop: 'Yes' transferred_to_fairhub_redcap_dataset: 'Yes' protected_or_open_source: open-source - extension_needed: 'Yes' + extension_needed: 'No' form_name: health_survey field_type: radio field_id: mhoccur_rnl @@ -8397,15 +8376,15 @@ mappings: src_code: '1' src_code_id: mhoccur_rnl_1 src_cd_description: 'Yes' - target_concept_id: 2005200017 - local_concept_id: 2005200017 - target_concept_name: Kidney problems + target_concept_id: 198124 + target_concept_name: Kidney disease target_domain_id: Condition - target_vocabulary_id: AIREADI + target_vocabulary_id: SNOMED target_concept_class_id: Disorder + target_concept_code: '90708001' target_standard_concept: S - predicate_id: skos:exactMatch - confidence: 1.0 + predicate_id: skos:closeMatch + confidence: 0.75 - mapping_record_id: AIREADI_MAPPING_0392 map_to_omop: 'Yes' transferred_to_fairhub_redcap_dataset: 'Yes' @@ -14172,15 +14151,15 @@ mappings: src_code: '2' src_code_id: cm_asp_2 src_cd_description: A few days (<1 day/week) - target_concept_id: 45884557 - target_concept_name: Less than a day + target_concept_id: 36210209 + target_concept_name: Less than once a week target_domain_id: Meas Value target_vocabulary_id: LOINC target_concept_class_id: Answer - target_concept_code: LA14482-6 + target_concept_code: LA27722-0 target_standard_concept: S - predicate_id: skos:closeMatch - confidence: 0.75 + predicate_id: skos:exactMatch + confidence: 1.0 - mapping_record_id: AIREADI_MAPPING_0690 map_to_omop: 'Yes' transferred_to_fairhub_redcap_dataset: 'Yes' @@ -14326,15 +14305,15 @@ mappings: src_code: '2' src_code_id: cm_act_2 src_cd_description: A few days (<1 day/week) - target_concept_id: 45884557 - target_concept_name: Less than a day + target_concept_id: 36210209 + target_concept_name: Less than once a week target_domain_id: Meas Value target_vocabulary_id: LOINC target_concept_class_id: Answer - target_concept_code: LA14482-6 + target_concept_code: LA27722-0 target_standard_concept: S - predicate_id: skos:closeMatch - confidence: 0.75 + predicate_id: skos:exactMatch + confidence: 1.0 - mapping_record_id: AIREADI_MAPPING_0697 map_to_omop: 'Yes' transferred_to_fairhub_redcap_dataset: 'Yes' @@ -14480,15 +14459,15 @@ mappings: src_code: '2' src_code_id: cm_ibp_2 src_cd_description: A few days (<1 day/week) - target_concept_id: 45884557 - target_concept_name: Less than a day + target_concept_id: 36210209 + target_concept_name: Less than once a week target_domain_id: Meas Value target_vocabulary_id: LOINC target_concept_class_id: Answer - target_concept_code: LA14482-6 + target_concept_code: LA27722-0 target_standard_concept: S - predicate_id: skos:closeMatch - confidence: 0.75 + predicate_id: skos:exactMatch + confidence: 1.0 - mapping_record_id: AIREADI_MAPPING_0704 map_to_omop: 'Yes' transferred_to_fairhub_redcap_dataset: 'Yes' @@ -14634,15 +14613,15 @@ mappings: src_code: '2' src_code_id: cm_ant_2 src_cd_description: A few days (<1 day/week) - target_concept_id: 45884557 - target_concept_name: Less than a day + target_concept_id: 36210209 + target_concept_name: Less than once a week target_domain_id: Meas Value target_vocabulary_id: LOINC target_concept_class_id: Answer - target_concept_code: LA14482-6 + target_concept_code: LA27722-0 target_standard_concept: S - predicate_id: skos:closeMatch - confidence: 0.75 + predicate_id: skos:exactMatch + confidence: 1.0 - mapping_record_id: AIREADI_MAPPING_0711 map_to_omop: 'Yes' transferred_to_fairhub_redcap_dataset: 'Yes' @@ -14788,15 +14767,15 @@ mappings: src_code: '2' src_code_id: cm_dcg_2 src_cd_description: A few days (<1 day/week) - target_concept_id: 45884557 - target_concept_name: Less than a day + target_concept_id: 36210209 + target_concept_name: Less than once a week target_domain_id: Meas Value target_vocabulary_id: LOINC target_concept_class_id: Answer - target_concept_code: LA14482-6 + target_concept_code: LA27722-0 target_standard_concept: S - predicate_id: skos:closeMatch - confidence: 0.75 + predicate_id: skos:exactMatch + confidence: 1.0 - mapping_record_id: AIREADI_MAPPING_0718 map_to_omop: 'Yes' transferred_to_fairhub_redcap_dataset: 'Yes' @@ -14942,15 +14921,15 @@ mappings: src_code: '2' src_code_id: cm_slp_2 src_cd_description: A few days (<1 day/week) - target_concept_id: 45884557 - target_concept_name: Less than a day + target_concept_id: 36210209 + target_concept_name: Less than once a week target_domain_id: Meas Value target_vocabulary_id: LOINC target_concept_class_id: Answer - target_concept_code: LA14482-6 + target_concept_code: LA27722-0 target_standard_concept: S - predicate_id: skos:closeMatch - confidence: 0.75 + predicate_id: skos:exactMatch + confidence: 1.0 - mapping_record_id: AIREADI_MAPPING_0725 map_to_omop: 'Yes' transferred_to_fairhub_redcap_dataset: 'Yes' @@ -16018,7 +15997,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -16041,7 +16019,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -17021,7 +16998,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -17044,7 +17020,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -18220,7 +18195,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -18243,7 +18217,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -18418,7 +18391,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:exactMatch confidence: 1.0 @@ -18441,7 +18413,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:exactMatch confidence: 1.0 @@ -20842,11 +20813,11 @@ mappings: extension_needed: 'No' form_name: px_neighborhood_environment_survey field_type: radio - field_id: pxne9_ + field_id: pxne9 field_id_num: 2556 question_or_answer: Answer src_code: '555' - src_code_id: pxne9__555 + src_code_id: pxne9_555 src_cd_description: Don't know/Not sure target_concept_id: 45876636 target_concept_name: Don't know @@ -20864,11 +20835,11 @@ mappings: extension_needed: 'No' form_name: px_neighborhood_environment_survey field_type: radio - field_id: pxne9_ + field_id: pxne9 field_id_num: 2557 question_or_answer: Answer src_code: '777' - src_code_id: pxne9__777 + src_code_id: pxne9_777 src_cd_description: Prefer not to say target_concept_id: 36311156 target_concept_name: Prefer not to say @@ -23098,7 +23069,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:exactMatch confidence: 1.0 @@ -23121,7 +23091,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:exactMatch confidence: 1.0 @@ -24214,11 +24183,11 @@ mappings: extension_needed: 'No' form_name: px_racial_ethnic_discrimination_survey field_type: radio - field_id: pxrd9 + field_id: pdrx9 field_id_num: 2653 question_or_answer: Answer src_code: '1' - src_code_id: pxrd9_1 + src_code_id: pdrx9_1 src_cd_description: 1 - Not at all stressful target_concept_id: 36210226 target_concept_name: Not at all bothersome @@ -24236,11 +24205,11 @@ mappings: extension_needed: 'No' form_name: px_racial_ethnic_discrimination_survey field_type: radio - field_id: pxrd9 + field_id: pdrx9 field_id_num: 2654 question_or_answer: Answer src_code: '6' - src_code_id: pxrd9_6 + src_code_id: pdrx9_6 src_cd_description: 6 - Extremely stressful target_concept_id: 36210124 target_concept_name: Extremely bothersome @@ -24258,11 +24227,11 @@ mappings: extension_needed: 'No' form_name: px_racial_ethnic_discrimination_survey field_type: radio - field_id: pxrd9 + field_id: pdrx9 field_id_num: 2655 question_or_answer: Answer src_code: '777' - src_code_id: pxrd9_777 + src_code_id: pdrx9_777 src_cd_description: Prefer not to say target_concept_id: 36311156 target_concept_name: Prefer not to say @@ -30714,7 +30683,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -30737,7 +30705,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -35786,7 +35753,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -35831,7 +35797,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -39951,7 +39916,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -39974,7 +39938,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -41059,7 +41022,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -41082,7 +41044,6 @@ mappings: target_domain_id: Observation target_vocabulary_id: AIREADI target_concept_class_id: Qualifier Value - target_concept_code: '118575009' target_standard_concept: S predicate_id: skos:closeMatch confidence: 0.75 @@ -41335,7 +41296,7 @@ mappings: map_to_omop: 'Yes' transferred_to_fairhub_redcap_dataset: 'Yes' protected_or_open_source: open-source - extension_needed: 'No' + extension_needed: 'Yes' form_name: substance_use_survey field_type: dropdown field_id: susmkdosfr @@ -41344,14 +41305,14 @@ mappings: src_code: '31' src_code_id: susmkdosfr_31 src_cd_description: 31-40 (up to 2 packs) - target_concept_id: 45884478 - target_concept_name: 31 or more (3 points) + target_concept_id: 2005200636 + local_concept_id: 2005200636 + target_concept_name: 31-40 (up to 2 packs) target_domain_id: Meas Value - target_vocabulary_id: LOINC + target_vocabulary_id: AIREADI target_concept_class_id: Answer - target_concept_code: LA15915-4 target_standard_concept: S - predicate_id: skos:closeMatch + predicate_id: skos:exactMatch confidence: 1.0 - mapping_record_id: AIREADI_MAPPING_1923 map_to_omop: 'Yes' diff --git a/redCapDataDictionaryWithExtension/linkml/ai_readi_redcap_value_set_mapping_summary.md b/redCapDataDictionaryWithExtension/linkml/ai_readi_redcap_value_set_mapping_summary.md index 2a40a1a..d290279 100644 --- a/redCapDataDictionaryWithExtension/linkml/ai_readi_redcap_value_set_mapping_summary.md +++ b/redCapDataDictionaryWithExtension/linkml/ai_readi_redcap_value_set_mapping_summary.md @@ -25,8 +25,8 @@ - Meas Value: 1231 - Observation: 439 - Unit: 145 -- Measurement: 115 -- [blank]: 75 +- Measurement: 114 +- [blank]: 76 - Condition: 32 - Procedure: 22 - Route: 12 @@ -34,11 +34,11 @@ - Device: 1 ### TARGET_VOCABULARY_ID -- LOINC: 1185 -- AIREADI: 423 +- LOINC: 1183 +- AIREADI: 422 - UCUM: 145 -- SNOMED: 139 -- [blank]: 75 +- SNOMED: 141 +- [blank]: 76 - AIREADI-Vision: 69 - AIREADI-MOCA: 30 - PPI: 5 @@ -46,12 +46,12 @@ - OMOP Extension: 1 ### PREDICATE_ID -- skos:exactMatch: 1730 -- skos:closeMatch: 269 -- [blank]: 75 +- skos:exactMatch: 1734 +- skos:closeMatch: 264 +- [blank]: 76 - skos:relatedMatch: 2 ### Extension_Needed -- No: 1553 -- Yes: 522 +- No: 1554 +- Yes: 521 - [blank]: 1 diff --git a/redCapDataDictionaryWithExtension/scripts/audit_concept_map.py b/redCapDataDictionaryWithExtension/scripts/audit_concept_map.py new file mode 100644 index 0000000..3ea1c8c --- /dev/null +++ b/redCapDataDictionaryWithExtension/scripts/audit_concept_map.py @@ -0,0 +1,286 @@ +"""Release audit for the AI-READI concept map (run before every release). + +Part A - structural checks (each should report 0 rows unless noted): + A1 Custom target (2005200xxx) missing from concept_manual.csv, or name/domain differs + A2 Same TARGET_CONCEPT_ID used with different name, domain, vocabulary or code + A3 Non-custom target not flagged standard ('S') + A4 Predicate/confidence: exactMatch with confidence < 1; target 0 with a predicate; + non-zero target without a predicate + A5 Duplicate (FORM_NAME, FIELD_ID, SRC_CODE, row type) keys + (informational: Yes answers deliberately mapped to both a Condition/Observation + concept and the Yes value are listed here) + A6 Leading/trailing spaces or non-breaking spaces in key columns + A7 Custom concept used as a Condition/answer target where a review is due + (lists every custom Condition target; check whether a standard concept exists) + A8 Answer rows whose FIELD_ID matches no question row (a field-name typo stops the + ETL from linking the answers; e.g. pxne9_ and pxrd9 before v1.5) + +Part B - review lists (read every row; nothing here is automatically wrong): + B1 Answer rows whose source text differs from the target concept name + B2 Question rows mapped to standard concepts (source text vs target name) + +Part C - same row type, same predicate convention (informational): + C1 "Other (please specify)" style rows and their predicates + C2 Distinct predicate/confidence combinations with counts + +Usage (from any folder): + python redCapDataDictionaryWithExtension/scripts/audit_concept_map.py [mapping.csv] [--out report.md] + +Databricks notebook (files in a Volume or a Git folder; no extra packages needed): + %sh + python /Workspace//audit_concept_map.py /Volumes////_ai_readi_redcap_value_set_mapping_common.csv \ + --concept-manual /Volumes////concept_manual.csv \ + --out /Volumes////audit_concept_map_report.md + +Writes a Markdown report (default: audit_concept_map_report.md next to this script) +and prints a summary. Line numbers refer to the CSV file (header = line 1). +Vocabulary checks against the deployed OMOP vocabulary are in validate_concept_map_vocab.sql. +""" +import argparse +import collections +import csv +import re +import sys +from pathlib import Path + +try: + HERE = Path(__file__).resolve().parent +except NameError: # pasted into a notebook cell: no __file__; pass paths to run_audit() instead + HERE = Path.cwd() +ROOT = HERE.parent +DEFAULT_MAP = ROOT / "value-set-mapping-common" / "_ai_readi_redcap_value_set_mapping_common.csv" +CONCEPT_MANUAL = ROOT / "OHDSI-vocabulary-request" / "concept_manual.csv" +MAP_COLUMNS = ["Map_to_OMOP", "transferred_to_fairhub_REDCap_dataset", "Protected_or_open-source", "Extension_Needed", + "FORM_NAME", "FIELD_TYPE", "FIELD_ID", "FIELD_ID_NUM", "temp_Question_or_Answer", "SRC_CODE", + "SRC_CODE_ID", "SRC_CD_DESCRIPTION", "TARGET_CONCEPT_ID", "LOCAL_CONCEPT_ID", "TARGET_CONCEPT_NAME", + "TARGET_DOMAIN_ID", "TARGET_VOCABULARY_ID", "TARGET_CONCEPT_CLASS_ID", "TARGET_CONCEPT_CODE", + "TARGET_STANDARD_CONCEPT", "PREDICATE_ID", "CONFIDENCE", "MODIFIER", "value_as_concept_id", + "qualifier_concept_id", "qualifier_source_value"] +KEY_COLS = ["FIELD_ID", "SRC_CODE", "TARGET_CONCEPT_ID", "TARGET_CONCEPT_NAME", + "TARGET_DOMAIN_ID", "TARGET_VOCABULARY_ID", "TARGET_CONCEPT_CODE", "PREDICATE_ID", "CONFIDENCE"] + +if hasattr(sys.stdout, "reconfigure"): + sys.stdout.reconfigure(encoding="utf-8") + + +def norm(s): + return re.sub(r"[^a-z0-9]", "", s.lower()) + + +def is_custom(cid): + return cid.startswith("20052") + + +def mapped(cid): + return cid not in ("", "0") + + +def main(argv=None): + ap = argparse.ArgumentParser() + ap.add_argument("mapping", nargs="?", default=str(DEFAULT_MAP)) + ap.add_argument("--concept-manual", default=str(CONCEPT_MANUAL), + help="path to concept_manual.csv (default: the copy in this repository)") + ap.add_argument("--out", default=str(HERE / "audit_concept_map_report.md")) + a, _ = ap.parse_known_args(argv) # ignore extra arguments added by notebook runners + + with open(a.mapping, encoding="utf-8-sig", newline="") as f: + rows = list(csv.DictReader(f)) + for i, r in enumerate(rows): + r["_ln"] = i + 2 + with open(a.concept_manual, encoding="utf-8-sig", newline="") as f: + cm = {c["concept_id"].strip(): c for c in csv.DictReader(f)} + return audit(rows, cm, a.out, Path(a.mapping).name) + + +def _text(v): + """Table values to the text the CSV would hold (None -> '', 1.0 -> '1').""" + if v is None: + return "" + if isinstance(v, float) and v.is_integer(): + return str(int(v)) + return str(v) + + +def run_audit_table(table="hive_metastore.redcapsurveydb.ai_readi_redcap_value_set_mapping_common", + concept_manual=None, out=None): + """Databricks entry point: audit the concept map loaded as a table. + + table : the mapping table (every column as in the CSV) + concept_manual : optional path to concept_manual.csv, or a table name holding it; + if omitted, check A1 (custom concepts vs concept_manual) is skipped + out : optional path for the Markdown report (e.g. a /Volumes/... path) + + A Spark table has no row order, so the 'Line' column is blank; rows are identified + by FIELD_ID and SRC_CODE. Use the CSV entry points for line numbers. + """ + from pyspark.sql import SparkSession + spark = SparkSession.builder.getOrCreate() + # column names as in the CSV header, whatever case the table stores them in + canon = {c.lower(): c for c in MAP_COLUMNS} + rows = [{canon.get(k.lower(), k): _text(v) for k, v in r.asDict().items()} for r in spark.table(table).collect()] + missing = [c for c in MAP_COLUMNS if c not in rows[0]] if rows else MAP_COLUMNS + if missing: + raise ValueError(f"{table} is missing columns: {missing}") + for r in rows: + r["_ln"] = "" + cm = None + if concept_manual: + if concept_manual.lower().endswith(".csv"): + with open(concept_manual, encoding="utf-8-sig", newline="") as f: + cm = {c["concept_id"].strip(): c for c in csv.DictReader(f)} + else: + cm = {_text(r["concept_id"]).strip(): {k: _text(v) for k, v in r.asDict().items()} + for r in spark.table(concept_manual).collect()} + return audit(rows, cm, out, table) + + +def audit(rows, cm, out, label): + """Run all checks. rows: list of dicts (CSV columns as text, plus '_ln'); cm: concept_manual by id or None.""" + for r in rows: + r["_raw"] = {k: v for k, v in r.items() if k != "_ln"} + for k in list(r): + if isinstance(r[k], str) and not k.startswith("_"): + r[k] = r[k].strip() + + sections = [] # (title, header, rows, expect_zero) + + # A1 + a1 = [] + for r in rows if cm is not None else []: + t = r["TARGET_CONCEPT_ID"] + if is_custom(t): + c = cm.get(t) + if not c: + a1.append((r["_ln"], r["FIELD_ID"], r["SRC_CODE"], t, "not in concept_manual.csv")) + elif c["concept_name"].strip() != r["TARGET_CONCEPT_NAME"]: + a1.append((r["_ln"], r["FIELD_ID"], r["SRC_CODE"], t, f"name: map '{r['TARGET_CONCEPT_NAME']}' vs manual '{c['concept_name'].strip()}'")) + elif c["domain_id"].strip() != r["TARGET_DOMAIN_ID"]: + a1.append((r["_ln"], r["FIELD_ID"], r["SRC_CODE"], t, f"domain: map {r['TARGET_DOMAIN_ID']} vs manual {c['domain_id'].strip()}")) + sections.append(("A1 Custom targets vs concept_manual.csv" + ("" if cm is not None else " (skipped: no concept_manual given)"), ["Line", "FIELD_ID", "SRC_CODE", "Concept", "Problem"], a1, True)) + + # A2 + g = collections.defaultdict(lambda: collections.defaultdict(list)) + for r in rows: + if mapped(r["TARGET_CONCEPT_ID"]): + sig = (r["TARGET_CONCEPT_NAME"], r["TARGET_DOMAIN_ID"], r["TARGET_VOCABULARY_ID"], r["TARGET_CONCEPT_CODE"]) + g[r["TARGET_CONCEPT_ID"]][sig].append(r["_ln"]) + a2 = [] + for cid, sigs in g.items(): + if len(sigs) > 1: + for sig, lns in sigs.items(): + a2.append((cid, " / ".join(x or "(blank)" for x in sig), f"{len(lns)}: " + ", ".join(map(str, lns[:15])) + (" ..." if len(lns) > 15 else ""))) + sections.append(("A2 Same concept_id with different name/domain/vocabulary/code", ["Concept", "Name / domain / vocabulary / code", "Rows (lines)"], a2, True)) + + # A3 + a3 = [(r["_ln"], r["FIELD_ID"], r["SRC_CODE"], r["TARGET_CONCEPT_ID"], r["TARGET_CONCEPT_NAME"], r["TARGET_STANDARD_CONCEPT"]) + for r in rows if mapped(r["TARGET_CONCEPT_ID"]) and not is_custom(r["TARGET_CONCEPT_ID"]) and r["TARGET_STANDARD_CONCEPT"] != "S"] + sections.append(("A3 Non-custom target not flagged standard", ["Line", "FIELD_ID", "SRC_CODE", "Concept", "Name", "Standard"], a3, True)) + + # A4 + a4 = [] + for r in rows: + p, c, t = r["PREDICATE_ID"], r["CONFIDENCE"], r["TARGET_CONCEPT_ID"] + if p == "skos:exactMatch" and c != "1": + a4.append((r["_ln"], r["FIELD_ID"], r["SRC_CODE"], t, p, c, "exactMatch with confidence < 1")) + if t == "0" and p: + a4.append((r["_ln"], r["FIELD_ID"], r["SRC_CODE"], t, p, c, "target 0 with a predicate")) + if mapped(t) and not p: + a4.append((r["_ln"], r["FIELD_ID"], r["SRC_CODE"], t, p, c, "target without a predicate")) + sections.append(("A4 Predicate / confidence rules", ["Line", "FIELD_ID", "SRC_CODE", "Concept", "Predicate", "Confidence", "Problem"], a4, True)) + + # A5 + k = collections.defaultdict(list) + for r in rows: + k[(r["FORM_NAME"], r["FIELD_ID"], r["SRC_CODE"], r["temp_Question_or_Answer"])].append(r) + a5 = [] + for key, rs in k.items(): + if len(rs) > 1: + a5.append((" / ".join(key), ", ".join(str(r["_ln"]) for r in rs), + " | ".join(f"{r['TARGET_CONCEPT_ID']} {r['TARGET_CONCEPT_NAME'][:40]} ({r['TARGET_DOMAIN_ID']})" for r in rs))) + sections.append(("A5 Duplicate keys (informational: Yes -> Condition/Observation + Yes value pairs are expected)", + ["Form / field / code / type", "Lines", "Targets"], a5, False)) + + # A6 + a6 = [] + for r in rows: + for col in KEY_COLS + ["SRC_CD_DESCRIPTION", "MODIFIER"]: + v = r["_raw"].get(col, "") or "" + if v != v.strip() or "\u00a0" in v: + a6.append((r["_ln"], col, repr(v[:60]))) + sections.append(("A6 Leading/trailing or non-breaking spaces", ["Line", "Column", "Value"], a6, True)) + + # A7 + a7 = [(r["_ln"], r["FIELD_ID"], r["SRC_CODE"], r["SRC_CD_DESCRIPTION"][:60], r["TARGET_CONCEPT_ID"], r["TARGET_CONCEPT_NAME"][:60]) + for r in rows if is_custom(r["TARGET_CONCEPT_ID"]) and r["TARGET_DOMAIN_ID"] == "Condition"] + sections.append(("A7 Custom concepts used as Condition targets (check for a standard alternative)", + ["Line", "FIELD_ID", "SRC_CODE", "Source text", "Concept", "Name"], a7, False)) + + # A8 + qcodes = {r["SRC_CODE"] for r in rows if r["temp_Question_or_Answer"] == "Question"} + a8 = [(r["_ln"], r["FORM_NAME"], r["FIELD_ID"], r["SRC_CODE"], r["SRC_CD_DESCRIPTION"][:60], r["TARGET_CONCEPT_ID"]) + for r in rows if r["temp_Question_or_Answer"] == "Answer" and r["FIELD_ID"] not in qcodes] + sections.append(("A8 Answers whose FIELD_ID matches no question row (field-name typos; administrative fields expected)", + ["Line", "Form", "FIELD_ID", "SRC_CODE", "Source text", "Concept"], a8, False)) + + # B1 + b1 = [(r["_ln"], r["FIELD_ID"], r["SRC_CODE"], r["SRC_CD_DESCRIPTION"][:80], r["TARGET_CONCEPT_ID"], r["TARGET_CONCEPT_NAME"][:80], + r["TARGET_DOMAIN_ID"], f"{r['PREDICATE_ID'].replace('skos:', '')} {r['CONFIDENCE']}") + for r in rows if r["temp_Question_or_Answer"] == "Answer" and mapped(r["TARGET_CONCEPT_ID"]) + and not is_custom(r["TARGET_CONCEPT_ID"]) and norm(r["SRC_CD_DESCRIPTION"]) != norm(r["TARGET_CONCEPT_NAME"])] + sections.append(("B1 Answers whose text differs from the target name (review each)", + ["Line", "FIELD_ID", "SRC_CODE", "Source text", "Concept", "Target name", "Domain", "Predicate"], b1, False)) + + # B2 + b2 = [(r["_ln"], r["SRC_CODE"], r["SRC_CD_DESCRIPTION"][:100], r["TARGET_CONCEPT_ID"], r["TARGET_CONCEPT_NAME"][:80], + r["TARGET_DOMAIN_ID"], f"{r['PREDICATE_ID'].replace('skos:', '')} {r['CONFIDENCE']}") + for r in rows if r["temp_Question_or_Answer"] == "Question" and mapped(r["TARGET_CONCEPT_ID"]) and not is_custom(r["TARGET_CONCEPT_ID"])] + sections.append(("B2 Questions mapped to standard concepts (review each)", + ["Line", "SRC_CODE", "Source text", "Concept", "Target name", "Domain", "Predicate"], b2, False)) + + # C1 + c1 = [(r["_ln"], r["SRC_CODE"] if r["temp_Question_or_Answer"] == "Question" else f"{r['FIELD_ID']}={r['SRC_CODE']}", + r["SRC_CD_DESCRIPTION"][:60], r["TARGET_CONCEPT_ID"], r["TARGET_CONCEPT_NAME"][:50], f"{r['PREDICATE_ID'].replace('skos:', '')} {r['CONFIDENCE']}") + for r in rows if mapped(r["TARGET_CONCEPT_ID"]) and re.match(r"^(yes, )?other\b", r["SRC_CD_DESCRIPTION"].lower())] + sections.append(("C1 'Other' rows and their predicates (should follow one convention)", + ["Line", "Field", "Source text", "Concept", "Target name", "Predicate"], c1, False)) + + # C2 + pc = collections.Counter((r["PREDICATE_ID"] or "(blank)", r["CONFIDENCE"] or "(blank)") for r in rows) + c2 = [(p, c, n) for (p, c), n in pc.most_common()] + sections.append(("C2 Predicate / confidence combinations", ["Predicate", "Confidence", "Rows"], c2, False)) + + # write report + esc = lambda v: str(v).replace("|", "\\|").replace("\n", " ") + md = [f"# Concept map audit\n\nSource: `{label}` ({len(rows)} data rows)\n", + "Part A checks marked *expect 0* should report no rows. Parts B and C are review lists.\n", + "Vocabulary checks (standard, valid, name match in the deployed `omop_vocab`) are in `validate_concept_map_vocab.sql`.\n"] + print(f"{label}: {len(rows)} data rows") + for title, hdr, data, expect0 in sections: + flag = "" + if expect0: + flag = " - OK" if not data else " - CHECK" + print(f" {title}: {len(data)}{flag}") + md.append(f"\n## {title}: {len(data)}{' (expect 0)' if expect0 else ''}\n") + if data: + md.append("| " + " | ".join(hdr) + " |\n|" + "---|" * len(hdr) + "\n") + md.extend("| " + " | ".join(esc(v) for v in row) + " |\n" for row in data) + if out: + out = str(out) + if out.startswith("file:"): # Databricks-style URI -> local path + out = out[len("file:"):] + Path(out).write_text("".join(md), encoding="utf-8") + print(f"Report: {out}") + return {title: {"header": hdr, "rows": data} for title, hdr, data, _ in sections} + + +def run_audit(mapping, concept_manual, out="audit_concept_map_report.md"): + """Notebook entry point, e.g. in Databricks after pasting this file into a cell: + run_audit("/Volumes////_ai_readi_redcap_value_set_mapping_common.csv", + "/Volumes////concept_manual.csv", + "/Volumes////audit_concept_map_report.md") + """ + main([str(mapping), "--concept-manual", str(concept_manual), "--out", str(out)]) + + +if __name__ == "__main__" and "__file__" in globals(): + main() diff --git a/redCapDataDictionaryWithExtension/scripts/count_concept_map.sql b/redCapDataDictionaryWithExtension/scripts/count_concept_map.sql index 8d32a22..76712f8 100644 --- a/redCapDataDictionaryWithExtension/scripts/count_concept_map.sql +++ b/redCapDataDictionaryWithExtension/scripts/count_concept_map.sql @@ -103,8 +103,8 @@ FROM rows ORDER BY CASE category WHEN 'Standard' THEN 1 WHEN 'Custom' THEN 2 WHEN 'Mapped total' THEN 3 WHEN 'Designated but unmapped' THEN 4 WHEN 'Not designated' THEN 5 ELSE 6 END; --- Expected (v1.4): Standard 1,479 (50.9%) / 391; Custom 488 (16.8%) / 343; --- Mapped 1,967 (67.7%) / 734; Designated-unmapped 109 (3.8%); +-- Expected (v1.5): Standard 1,479 (50.9%) / 391; Custom 487 (16.8%) / 342; +-- Mapped 1,966 (67.7%) / 733; Designated-unmapped 110 (3.8%); -- Not designated 830 (28.6%); Total 2,906. -- 2. Elements and distinct concepts by vocabulary ---------------------------------- @@ -116,8 +116,8 @@ FROM mapping_classified WHERE mapping_category IN ('Standard','Custom') GROUP BY mapping_category, TARGET_VOCABULARY_ID ORDER BY mapping_category DESC, elements DESC; --- Expected (v1.1): LOINC 1,199/284; SNOMED 131/65; UCUM 69/23; PPI 5/5; Ethnicity 4/2; --- OMOP Extension 1/1; AIREADI 390/267; AIREADI-Vision 69/47; AIREADI-MOCA 30/30. +-- Expected (v1.5): LOINC 1,183/271; UCUM 145/37; SNOMED 141/75; PPI 5/5; Ethnicity 4/2; +-- OMOP Extension 1/1; AIREADI 388/265; AIREADI-Vision 69/47; AIREADI-MOCA 30/30. -- 3. Designated-but-unmapped breakdown ------------------------------------------------- SELECT unmapped_reason, COUNT(*) AS n @@ -125,9 +125,9 @@ FROM mapping_classified WHERE mapping_category = 'Designated but unmapped' GROUP BY unmapped_reason ORDER BY n DESC; --- Expected (v1.1): reference range 46; survey timestamp 34; specimen handling 12; --- BCVA 10; no matching concept 2; REDCap administrative 1; MoCA paper flag 1 --- (total 106). +-- Expected (v1.5): reference range 46; survey timestamp 34; specimen handling 12; +-- BCVA 10; no matching concept 6; REDCap administrative 1; MoCA paper flag 1 +-- (total 110). -- 4. Confidence and SKOS predicate distribution ----------------------------------------- SELECT mapping_category, @@ -138,9 +138,9 @@ FROM mapping_classified WHERE mapping_category IN ('Standard','Custom') GROUP BY mapping_category, PREDICATE_ID, CONFIDENCE ORDER BY mapping_category DESC, PREDICATE_ID, CONFIDENCE DESC; --- Expected (v1.1, standard): exact 1,172; close 235; related 2; --- confidence 1.0 = 1,323; 0.75 = 85; 0.5 = 1. --- Expected (v1.1, custom): all 489 exact match at confidence 1.0. +-- Expected (v1.5, standard): exact 1,241; close 236 (155 at 1, 81 at 0.75); related 2; +-- confidence 1 = 1,396; 0.75 = 82; 0.5 = 1. +-- Expected (v1.5, custom): all 487 exact match at confidence 1. -- 5. Laterality qualifiers --------------------------------------------------------------- SELECT qualifier_concept_id, qualifier_source_value, COUNT(*) AS n diff --git a/redCapDataDictionaryWithExtension/scripts/validate_concept_map_vocab.sql b/redCapDataDictionaryWithExtension/scripts/validate_concept_map_vocab.sql new file mode 100644 index 0000000..132b9c9 --- /dev/null +++ b/redCapDataDictionaryWithExtension/scripts/validate_concept_map_vocab.sql @@ -0,0 +1,232 @@ +-- ============================================================================= +-- validate_concept_map_vocab.sql +-- AI-READI concept map: check every target against the deployed OMOP vocabulary +-- +-- Run before every release, after loading the mapping file as a table. +-- Dialect: Databricks / Spark SQL. Each check should return 0 rows unless noted. +-- +-- Set these two names for your workspace: +-- mapping table : redcapsurveydb.ai_readi_redcap_value_set_mapping_common +-- vocabulary : omop_vocab.concept +-- The structural checks (custom concepts, predicates, duplicates, review lists) +-- are in audit_concept_map.py in this folder. +-- ============================================================================= + +CREATE OR REPLACE TEMPORARY VIEW cmap AS +SELECT *, + TRY_CAST(TRIM(CAST(TARGET_CONCEPT_ID AS STRING)) AS BIGINT) AS tid, + TRY_CAST(TRIM(CAST(value_as_concept_id AS STRING)) AS BIGINT) AS vid, + TRY_CAST(TRIM(CAST(qualifier_concept_id AS STRING)) AS BIGINT) AS qid +FROM redcapsurveydb.ai_readi_redcap_value_set_mapping_common; + +-- V0. Row count (v1.4 and v1.5: 2,076) +SELECT COUNT(*) AS n_rows FROM cmap; + +-- V1. Standard (non-custom) targets missing from the vocabulary, not standard, or invalid. Expect 0 rows. +SELECT m.tid, m.TARGET_CONCEPT_NAME, c.concept_name, c.standard_concept, c.invalid_reason, + COUNT(*) AS n_rows, MIN(m.FIELD_ID) AS example_field +FROM cmap m +LEFT JOIN omop_vocab.concept c ON c.concept_id = m.tid +WHERE m.tid IS NOT NULL AND m.tid <> 0 AND m.tid < 2000000000 + AND (c.concept_id IS NULL OR c.standard_concept IS DISTINCT FROM 'S' OR c.invalid_reason IS NOT NULL) +GROUP BY ALL +ORDER BY m.tid; + +-- V2. Name, domain, vocabulary or code in the map differ from the vocabulary. Expect 0 rows. +SELECT m.tid, + m.TARGET_CONCEPT_NAME AS map_name, c.concept_name AS vocab_name, + m.TARGET_DOMAIN_ID AS map_domain, c.domain_id AS vocab_domain, + m.TARGET_VOCABULARY_ID AS map_vocab, c.vocabulary_id AS vocab_vocab, + m.TARGET_CONCEPT_CODE AS map_code, c.concept_code AS vocab_code, + COUNT(*) AS n_rows +FROM cmap m +JOIN omop_vocab.concept c ON c.concept_id = m.tid +WHERE m.tid <> 0 AND m.tid < 2000000000 + AND (TRIM(m.TARGET_CONCEPT_NAME) <> c.concept_name + OR TRIM(m.TARGET_DOMAIN_ID) <> c.domain_id + OR TRIM(m.TARGET_VOCABULARY_ID) <> c.vocabulary_id + OR COALESCE(TRIM(m.TARGET_CONCEPT_CODE), '') <> c.concept_code) +GROUP BY ALL +ORDER BY m.tid; +-- Note: a domain difference is expected only where the map deliberately overrides the +-- domain (for example a Meas Value answer used as an OBSERVATION value). Review each row. + +-- V3. value_as_concept_id and qualifier_concept_id: missing, non-standard or invalid. Expect 0 rows. +SELECT 'value_as_concept_id' AS col, x.id, c.concept_name, c.standard_concept, c.invalid_reason, COUNT(*) AS n_rows +FROM (SELECT vid AS id FROM cmap WHERE vid IS NOT NULL AND vid <> 0 AND vid < 2000000000) x +LEFT JOIN omop_vocab.concept c ON c.concept_id = x.id +WHERE c.concept_id IS NULL OR c.standard_concept IS DISTINCT FROM 'S' OR c.invalid_reason IS NOT NULL +GROUP BY ALL +UNION ALL +SELECT 'qualifier_concept_id', x.id, c.concept_name, c.standard_concept, c.invalid_reason, COUNT(*) +FROM (SELECT qid AS id FROM cmap WHERE qid IS NOT NULL AND qid <> 0 AND qid < 2000000000) x +LEFT JOIN omop_vocab.concept c ON c.concept_id = x.id +WHERE c.concept_id IS NULL OR c.standard_concept IS DISTINCT FROM 'S' OR c.invalid_reason IS NOT NULL +GROUP BY ALL; + +-- V4. Unit and route rows point at the right domain. Expect 0 rows. +SELECT m.FIELD_ID, m.SRC_CODE, m.tid, c.concept_name, c.domain_id +FROM cmap m +JOIN omop_vocab.concept c ON c.concept_id = m.tid +WHERE (TRIM(m.TARGET_DOMAIN_ID) = 'Unit' AND c.domain_id <> 'Unit') + OR (TRIM(m.TARGET_DOMAIN_ID) = 'Route' AND c.domain_id <> 'Route'); + +-- V5. Custom concepts used as Condition targets: is there a standard SNOMED condition +-- with the same name? (Informational; review each match.) +SELECT m.FIELD_ID, m.tid AS custom_id, m.TARGET_CONCEPT_NAME, + c.concept_id AS standard_id, c.concept_name AS standard_name, c.concept_code +FROM cmap m +JOIN omop_vocab.concept c + ON LOWER(c.concept_name) = LOWER(TRIM(m.TARGET_CONCEPT_NAME)) + AND c.standard_concept = 'S' AND c.domain_id = 'Condition' AND c.invalid_reason IS NULL +WHERE m.tid >= 2000000000 AND TRIM(m.TARGET_DOMAIN_ID) = 'Condition'; + +-- ----------------------------------------------------------------------------- +-- Lookups for the v1.5 candidates (informational) +-- ----------------------------------------------------------------------------- + +-- L1. Stroke (230690007) and kidney disease (90708001) +SELECT concept_id, concept_name, domain_id, concept_class_id, concept_code, standard_concept, invalid_reason +FROM omop_vocab.concept +WHERE vocabulary_id = 'SNOMED' AND concept_code IN ('230690007', '90708001'); + +-- L2. A frequency answer for "A few days (<1 day/week)" (cm_* lines 690-725) +SELECT concept_id, concept_name, concept_code +FROM omop_vocab.concept +WHERE vocabulary_id = 'LOINC' AND concept_class_id = 'Answer' AND standard_concept = 'S' + AND (concept_name ILIKE 'less than once a week%' OR concept_name ILIKE 'less than weekly%' + OR concept_name ILIKE 'less than 1 day%week%' OR concept_name ILIKE 'less than once per week%'); + +-- L3. A "route of administration" question concept for cmroute (line 331) +SELECT concept_id, concept_name, vocabulary_id, domain_id, concept_class_id, concept_code +FROM omop_vocab.concept +WHERE standard_concept = 'S' AND invalid_reason IS NULL + AND concept_name ILIKE '%route of administration%' + AND domain_id IN ('Observation', 'Measurement'); + +-- ----------------------------------------------------------------------------- +-- Structural checks on the table (same as audit_concept_map.py, without line numbers; +-- rows are identified by FORM_NAME, FIELD_ID and SRC_CODE) +-- ----------------------------------------------------------------------------- + +-- S1. Same concept_id with different name, domain, vocabulary or code. Expect 0 rows. +SELECT tid, TRIM(TARGET_CONCEPT_NAME) AS name, TRIM(TARGET_DOMAIN_ID) AS domain, + TRIM(TARGET_VOCABULARY_ID) AS vocab, COALESCE(TRIM(CAST(TARGET_CONCEPT_CODE AS STRING)), '') AS code, + COUNT(*) AS n_rows +FROM cmap +WHERE tid IN (SELECT tid FROM cmap WHERE tid IS NOT NULL AND tid <> 0 + GROUP BY tid + HAVING COUNT(DISTINCT CONCAT_WS('|', TRIM(TARGET_CONCEPT_NAME), TRIM(TARGET_DOMAIN_ID), + TRIM(TARGET_VOCABULARY_ID), COALESCE(TRIM(CAST(TARGET_CONCEPT_CODE AS STRING)), ''))) > 1) +GROUP BY ALL +ORDER BY tid; + +-- S2. Predicate / confidence rules. Expect 0 rows. +SELECT FORM_NAME, FIELD_ID, SRC_CODE, tid, PREDICATE_ID, CONFIDENCE, + CASE WHEN TRIM(PREDICATE_ID) = 'skos:exactMatch' AND TRY_CAST(CONFIDENCE AS DOUBLE) <> 1 THEN 'exactMatch with confidence < 1' + WHEN tid = 0 AND COALESCE(TRIM(PREDICATE_ID), '') <> '' THEN 'target 0 with a predicate' + ELSE 'target without a predicate' END AS problem +FROM cmap +WHERE (TRIM(PREDICATE_ID) = 'skos:exactMatch' AND TRY_CAST(CONFIDENCE AS DOUBLE) <> 1) + OR (tid = 0 AND COALESCE(TRIM(PREDICATE_ID), '') <> '') + OR (tid IS NOT NULL AND tid <> 0 AND COALESCE(TRIM(PREDICATE_ID), '') = ''); + +-- S3. Leading/trailing or non-breaking spaces in key columns. Expect 0 rows. +SELECT FORM_NAME, FIELD_ID, SRC_CODE, col, val +FROM (SELECT FORM_NAME, FIELD_ID, SRC_CODE, + STACK(5, 'FIELD_ID', FIELD_ID, 'SRC_CODE', CAST(SRC_CODE AS STRING), + 'TARGET_CONCEPT_NAME', TARGET_CONCEPT_NAME, 'SRC_CD_DESCRIPTION', SRC_CD_DESCRIPTION, + 'MODIFIER', CAST(MODIFIER AS STRING)) AS (col, val) + FROM cmap) +WHERE val <> TRIM(val) OR val LIKE CONCAT('%', CHAR(160), '%'); + +-- S4. Custom concepts used as Condition targets: check each for a standard alternative. (Review list.) +SELECT FIELD_ID, SRC_CODE, SRC_CD_DESCRIPTION, tid, TARGET_CONCEPT_NAME +FROM cmap +WHERE tid >= 2000000000 AND TRIM(TARGET_DOMAIN_ID) = 'Condition' +ORDER BY FIELD_ID; + +-- S5. Answers whose text differs from the target concept name: read each row. (Review list.) +SELECT FORM_NAME, FIELD_ID, SRC_CODE, SRC_CD_DESCRIPTION, tid, TARGET_CONCEPT_NAME, TARGET_DOMAIN_ID, + PREDICATE_ID, CONFIDENCE +FROM cmap +WHERE TRIM(temp_Question_or_Answer) = 'Answer' AND tid IS NOT NULL AND tid <> 0 AND tid < 2000000000 + AND REGEXP_REPLACE(LOWER(SRC_CD_DESCRIPTION), '[^a-z0-9]', '') <> REGEXP_REPLACE(LOWER(TARGET_CONCEPT_NAME), '[^a-z0-9]', '') +ORDER BY FORM_NAME, FIELD_ID, SRC_CODE; + +-- S6. Questions mapped to standard concepts: read each row. (Review list.) +SELECT FORM_NAME, SRC_CODE, SRC_CD_DESCRIPTION, tid, TARGET_CONCEPT_NAME, TARGET_DOMAIN_ID, PREDICATE_ID, CONFIDENCE +FROM cmap +WHERE TRIM(temp_Question_or_Answer) = 'Question' AND tid IS NOT NULL AND tid <> 0 AND tid < 2000000000 +ORDER BY FORM_NAME, SRC_CODE; + +-- S7. Custom targets not in the deployed vocabulary (only meaningful if the AI-READI custom +-- concepts are loaded into omop_vocab.concept; otherwise every custom ID is listed). +SELECT m.tid, MIN(m.TARGET_CONCEPT_NAME) AS map_name, COUNT(*) AS n_rows +FROM cmap m +LEFT JOIN omop_vocab.concept c ON c.concept_id = m.tid +WHERE m.tid >= 2000000000 AND c.concept_id IS NULL +GROUP BY m.tid +ORDER BY m.tid; + +-- ----------------------------------------------------------------------------- +-- Consistency checks between questions, answers and the vocabulary (added for v1.5 review) +-- ----------------------------------------------------------------------------- + +-- V6. LOINC answers that are not in the answer list of their question's LOINC concept. +-- A row here means the question and the answer come from different LOINC questions +-- (e.g. a PhenX answer used under a different question). Review each row. +WITH q AS ( + SELECT TRIM(SRC_CODE) AS field, tid AS q_id, TARGET_CONCEPT_NAME AS q_name + FROM cmap + WHERE TRIM(temp_Question_or_Answer) = 'Question' AND TRIM(TARGET_VOCABULARY_ID) = 'LOINC' AND tid <> 0 +), +a AS ( + SELECT TRIM(FIELD_ID) AS field, TRIM(CAST(SRC_CODE AS STRING)) AS code, SRC_CD_DESCRIPTION, tid AS a_id, TARGET_CONCEPT_NAME AS a_name + FROM cmap + WHERE TRIM(temp_Question_or_Answer) = 'Answer' AND TRIM(TARGET_VOCABULARY_ID) = 'LOINC' + AND TRIM(TARGET_CONCEPT_CLASS_ID) = 'Answer' AND tid <> 0 +), +has_list AS ( -- questions that have any answer list in the vocabulary + SELECT DISTINCT concept_id_1 AS q_id FROM omop_vocab.concept_relationship + WHERE relationship_id = 'Has Answer' AND invalid_reason IS NULL +) +SELECT q.field, q.q_id, q.q_name, a.code, a.SRC_CD_DESCRIPTION, a.a_id, a.a_name, + CASE WHEN h.q_id IS NULL THEN 'question has no LOINC answer list' ELSE 'answer not in the question''s list' END AS issue +FROM q +JOIN a ON a.field = q.field +LEFT JOIN has_list h ON h.q_id = q.q_id +LEFT JOIN omop_vocab.concept_relationship r + ON r.concept_id_1 = q.q_id AND r.concept_id_2 = a.a_id + AND r.relationship_id = 'Has Answer' AND r.invalid_reason IS NULL +WHERE r.concept_id_1 IS NULL + AND a.a_id NOT IN (45877994, 45878245, 36311156, 45876636, 45878142) -- generic Yes, No, Prefer not to say, Don't know, Other +ORDER BY issue, q.field, a.code; + +-- V7. For questions in V6 with answers from another list: which LOINC question owns those answers? +SELECT a.tid AS answer_id, MIN(a.TARGET_CONCEPT_NAME) AS answer_name, + c.concept_id AS loinc_question_id, c.concept_name AS loinc_question, c.concept_code, c.standard_concept +FROM cmap a +JOIN omop_vocab.concept_relationship r ON r.concept_id_2 = a.tid AND r.relationship_id = 'Has Answer' AND r.invalid_reason IS NULL +JOIN omop_vocab.concept c ON c.concept_id = r.concept_id_1 +WHERE TRIM(a.FIELD_ID) IN ('susmkdosfr') -- put the fields reported by V6 here +GROUP BY ALL +ORDER BY answer_id, loinc_question_id; + +-- V8. Custom concepts (any domain) whose name matches a standard concept exactly (case-insensitive). +SELECT TRIM(m.temp_Question_or_Answer) AS row_type, m.FIELD_ID, m.SRC_CODE, m.tid AS custom_id, m.TARGET_CONCEPT_NAME, + c.concept_id AS standard_id, c.concept_name AS standard_name, c.domain_id, c.vocabulary_id, c.concept_code +FROM cmap m +JOIN omop_vocab.concept c + ON LOWER(TRIM(c.concept_name)) = LOWER(TRIM(m.TARGET_CONCEPT_NAME)) + AND c.standard_concept = 'S' AND c.invalid_reason IS NULL +WHERE m.tid >= 2000000000 +ORDER BY m.tid; + +-- V9. Answer rows whose FIELD_ID has no question row (field-name typos stop the ETL from linking them). Expect 0 rows, +-- apart from administrative fields with no question row. +SELECT a.FORM_NAME, a.FIELD_ID, a.SRC_CODE, a.SRC_CD_DESCRIPTION, a.tid +FROM cmap a +LEFT JOIN cmap q ON TRIM(q.temp_Question_or_Answer) = 'Question' AND TRIM(CAST(q.SRC_CODE AS STRING)) = TRIM(a.FIELD_ID) +WHERE TRIM(a.temp_Question_or_Answer) = 'Answer' AND q.SRC_CODE IS NULL +ORDER BY a.FIELD_ID, a.SRC_CODE; diff --git a/redCapDataDictionaryWithExtension/sssom/ai_readi_redcap_value_set_mapping.sssom.tsv b/redCapDataDictionaryWithExtension/sssom/ai_readi_redcap_value_set_mapping.sssom.tsv index a7acf7a..8d21465 100644 --- a/redCapDataDictionaryWithExtension/sssom/ai_readi_redcap_value_set_mapping.sssom.tsv +++ b/redCapDataDictionaryWithExtension/sssom/ai_readi_redcap_value_set_mapping.sssom.tsv @@ -17,11 +17,11 @@ AIREADI_REDCAP:bcva.viaospscore Photopic LogMAR OS Score skos:exactMatch OMOP:20 AIREADI_REDCAP:bcva.viaodmsf Snellen fraction - Mesopic VA - OD skos:exactMatch OMOP:2005200054 Snellen fraction - Mesopic VA - OD semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI-Vision AI-READI manual_curation Snellen fraction - Mesopic VA - OD bcva text 1511 viaodmsf Question 2005200054 2005200054 Measurement AIREADI-Vision Clinical Observation S Yes open-source No 45876703 Right eye AIREADI_REDCAP:bcva.viaosmsf Snellen fraction - Mesopic VA - OS skos:exactMatch OMOP:2005200055 Snellen fraction - Mesopic VA - OS semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI-Vision AI-READI manual_curation Snellen fraction - Mesopic VA - OS bcva text 1512 viaosmsf Question 2005200055 2005200055 Measurement AIREADI-Vision Clinical Observation S Yes open-source No 45883829 Left eye AIREADI_REDCAP:screening_survey.scrsex What sex were you assigned at birth? That is, what is on your original birth certificate? skos:closeMatch OMOP:46235213 Sex assigned at birth semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation screening_survey radio 1050 scrsex Question 46235213 Observation LOINC Clinical Observation 76689-9 S No protected Yes -AIREADI_REDCAP:screening_survey.scrsexot Other (please specify) skos:exactMatch OMOP:46235213 Sex assigned at birth semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation screening_survey text 1051 scrsexot Question 46235213 Observation LOINC Clinical Observation 76689-9 S No protected Yes +AIREADI_REDCAP:screening_survey.scrsexot Other (please specify) skos:closeMatch OMOP:46235213 Sex assigned at birth semapv:ManualMappingCuration 0.75 AI-READI REDCap LOINC AI-READI manual_curation screening_survey text 1051 scrsexot Question 46235213 Observation LOINC Clinical Observation 76689-9 S No protected Yes AIREADI_REDCAP:screening_survey.ethnic Are you of Hispanic, Latina/x or Spanish origin? Please check all that apply. skos:exactMatch OMOP:42868351 Hispanic, latino-a, or spanish origin semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation screening_survey checkbox 1052 ethnic Question 42868351 Observation LOINC Clinical Observation 69854-8 S No protected Yes -AIREADI_REDCAP:screening_survey.ethnicot Other (please specify) skos:exactMatch OMOP:42868351 Hispanic, latino-a, or spanish origin semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation screening_survey text 1053 ethnicot Question 42868351 Observation LOINC Clinical Observation 69854-8 S No protected Yes +AIREADI_REDCAP:screening_survey.ethnicot Other (please specify) skos:closeMatch OMOP:42868351 Hispanic, latino-a, or spanish origin semapv:ManualMappingCuration 0.75 AI-READI REDCap LOINC AI-READI manual_curation screening_survey text 1053 ethnicot Question 42868351 Observation LOINC Clinical Observation 69854-8 S No protected Yes AIREADI_REDCAP:screening_survey.race How would you describe your race/ethnicity? (check all that apply) skos:closeMatch OMOP:3050381 Race or ethnicity semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation screening_survey checkbox 1055 race Question 3050381 Observation LOINC Clinical Observation 46463-6 S No protected Yes -AIREADI_REDCAP:screening_survey.raceot Other (please describe) skos:closeMatch OMOP:3050381 Race or ethnicity semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation screening_survey text 1056 raceot Question 3050381 Observation LOINC Clinical Observation 46463-6 S No protected Yes +AIREADI_REDCAP:screening_survey.raceot Other (please describe) skos:closeMatch OMOP:3050381 Race or ethnicity semapv:ManualMappingCuration 0.75 AI-READI REDCap LOINC AI-READI manual_curation screening_survey text 1056 raceot Question 3050381 Observation LOINC Clinical Observation 46463-6 S No protected Yes AIREADI_REDCAP:screening_survey.racetrib Tribal affiliation (please describe) skos:closeMatch OMOP:36660477 Tribal affiliation semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation screening_survey text 1057 racetrib Question 36660477 Observation LOINC Clinical Observation 95370-3 S No protected Yes AIREADI_REDCAP:screening_survey.race2 Which one of these groups would you say best represents your race? skos:closeMatch OMOP:3046853 Race semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation screening_survey radio 1058 race2 Question 3046853 Observation LOINC Clinical Observation 32624-9 S No protected Yes AIREADI_REDCAP:screening_survey.ancestry What is your ancestry or ethnic origin?(Examples: Italian, Jamaican, African American, Cambodian, Cape Verdean, Cherokee, Navajo, Nez Pearce, Norwegian, Dominican, French Canadian, Haitian, Korean, Lebanese, Polish, Nigerian, Mexican, Taiwanese, Ukrainian, and so on.) skos:exactMatch OMOP:2005200557 What is your ancestry or ethnic origin?(Examples: Italian, Jamaican, African American, Cambodian, Cape Verdean, Cherokee, Navajo, Nez Pearce, Norwegian, Dominican, French Canadian, Haitian, Korean, Lebanese, Polish, Nigerian, Mexican, Taiwanese, Ukrainian, and so on.) semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation screening_survey text 1059 ancestry Question 2005200557 2005200557 Observation AIREADI Survey S Yes protected Yes @@ -44,9 +44,9 @@ AIREADI_REDCAP:cesd10_survey.ces8 I was happy skos:exactMatch OMOP:1761700 Feeli AIREADI_REDCAP:cesd10_survey.ces9 I felt lonely skos:exactMatch OMOP:1761319 Feeling lonely semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation cesd10_survey radio 1205 ces9 Question 1761319 Observation LOINC Survey 100780-6 S No open-source Yes AIREADI_REDCAP:cesd10_survey.ces10 "I could not ""get going""" skos:exactMatch OMOP:1761073 Lack of energy semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation cesd10_survey radio 1206 ces10 Question 1761073 Observation LOINC Survey 100786-3 S No open-source Yes AIREADI_REDCAP:cesd10_survey.cestl CESD-10 Score skos:exactMatch OMOP:1761347 Total Score CES-D semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation cesd10_survey calc 1207 cestl Question 1761347 Observation LOINC Survey 100787-1 S No open-source Yes -AIREADI_REDCAP:cesd10_survey.cesstartts CES-D-10 Survey Started Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation CES-D-10 Survey Started Timestamp (from REDCap) cesd10_survey text 1208 cesstartts Question 2005200558 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200570 CES-D-10 Survey +AIREADI_REDCAP:cesd10_survey.cesstartts CES-D-10 Survey Started Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation CES-D-10 Survey Started Timestamp (from REDCap) cesd10_survey text 1208 cesstartts Question 2005200558 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200570 CES-D-10 Survey AIREADI_REDCAP:health_survey.mhcat_dmtaot Other (please specify): skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 2005200451 health_survey text 1132 mhcat_dmtaot Question 2005200014 2005200014 Observation AIREADI Survey S Yes protected Yes 2005200451 Other types of Dementia or Alzheimer's Disease -AIREADI_REDCAP:cesd10_survey.cescmpts CES-D-10 Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation CES-D-10 Survey Completed Timestamp (from REDCap) cesd10_survey text 1209 cescmpts Question 2005200559 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200570 CES-D-10 Survey +AIREADI_REDCAP:cesd10_survey.cescmpts CES-D-10 Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation CES-D-10 Survey Completed Timestamp (from REDCap) cesd10_survey text 1209 cescmpts Question 2005200559 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200570 CES-D-10 Survey AIREADI_REDCAP:cesd10_survey.0.ces1_0 Rarely or none of the time (< 1 day) skos:exactMatch OMOP:2005200141 Rarely or none of the time (< 1 day) semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation cesd10_survey radio ces1 2078 0 ces1_0 Answer 2005200141 2005200141 Meas Value AIREADI Answer S Yes open-source Yes AIREADI_REDCAP:cesd10_survey.1.ces1_1 Some or a little of the time (1-2 days) skos:exactMatch OMOP:2005200142 Some or a little of the time (1-2 days) semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation cesd10_survey radio ces1 2079 1 ces1_1 Answer 2005200142 2005200142 Meas Value AIREADI Answer S Yes open-source Yes AIREADI_REDCAP:health_survey.mhoccur_cnsot If yes, please specify: skos:exactMatch OMOP:2005200455 Neurocognitive disorder please specify semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 36309562 health_survey text 1136 mhoccur_cnsot Question 2005200455 2005200455 Observation AIREADI Survey S Yes protected Yes 36309562 Other neurological conditions @@ -92,13 +92,13 @@ AIREADI_REDCAP:cesd10_survey.3.ces10_3 All of the time (5-7 days) skos:exactMatc AIREADI_REDCAP:consent_survey.icf_dat Consent survey/form date (date survey/form opened) skos:closeMatch OMOP:4160030 Performed semapv:ManualMappingCuration 0.75 AI-READI REDCap SNOMED AI-READI manual_curation Consent survey/form date (date survey/form opened) consent_survey text 1071 icf_dat Question 4160030 Observation SNOMED Qualifier Value 398166005 S No open-source Yes 2005200565 Consent Survey AIREADI_REDCAP:consent_survey.c184390 Paper consent obtained skos:closeMatch OMOP:3018196 Informed consent obtained semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation consent_survey checkbox 1074 c184390 Question 3018196 Observation LOINC Clinical Observation 19826-7 S No open-source Yes AIREADI_REDCAP:consent_survey.c184390_dat Date paper consent completed skos:closeMatch OMOP:4160030 Performed semapv:ManualMappingCuration 0.75 AI-READI REDCap SNOMED AI-READI manual_curation Date paper consent completed consent_survey text 1075 c184390_dat Question 4160030 Observation SNOMED Qualifier Value 398166005 S No open-source Yes 2005200587 Paper Consent Completed -AIREADI_REDCAP:consent_survey.icfsvyts Consent Survey Start Timestamp skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Consent Survey Start Timestamp consent_survey text 1081 icfsvyts Question 2005200558 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200565 Consent Survey -AIREADI_REDCAP:consent_survey.icfcmpts Consent Survey Completed Timestamp skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Consent Survey Completed Timestamp consent_survey text 1082 icfcmpts Question 2005200559 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200565 Consent Survey +AIREADI_REDCAP:consent_survey.icfsvyts Consent Survey Start Timestamp skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Consent Survey Start Timestamp consent_survey text 1081 icfsvyts Question 2005200558 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200565 Consent Survey +AIREADI_REDCAP:consent_survey.icfcmpts Consent Survey Completed Timestamp skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Consent Survey Completed Timestamp consent_survey text 1082 icfcmpts Question 2005200559 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200565 Consent Survey AIREADI_REDCAP:demographics_survey.dmgcmpdat Demographic survey date (date survey/form opened) skos:closeMatch OMOP:4160030 Performed semapv:ManualMappingCuration 0.75 AI-READI REDCap SNOMED AI-READI manual_curation Demographic survey date (date survey/form opened) demographics_survey text 1106 dmgcmpdat Question 4160030 Observation SNOMED Qualifier Value 398166005 S No open-source Yes 2005200567 Demographic Survey AIREADI_REDCAP:demographics_survey.cage Age (in years) skos:exactMatch OMOP:3022304 Age semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation demographics_survey text 1112 cage Question 3022304 Observation LOINC Clinical Observation 30525-0 S No open-source Yes AIREADI_REDCAP:demographics_survey.cl_maristat Marital Status skos:exactMatch OMOP:4053609 Marital status semapv:ManualMappingCuration 1 AI-READI REDCap SNOMED AI-READI manual_curation demographics_survey radio 1113 cl_maristat Question 4053609 Observation SNOMED Observable Entity 125680007 S No open-source Yes -AIREADI_REDCAP:demographics_survey.dmgstartts Demographics Survey Started Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Demographics Survey Started Timestamp (from REDCap) demographics_survey text 1117 dmgstartts Question 2005200558 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200567 Demographic Survey -AIREADI_REDCAP:demographics_survey.dmgcmpts Demograhics Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Demograhics Survey Completed Timestamp (from REDCap) demographics_survey text 1118 dmgcmpts Question 2005200559 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200567 Demographic Survey +AIREADI_REDCAP:demographics_survey.dmgstartts Demographics Survey Started Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Demographics Survey Started Timestamp (from REDCap) demographics_survey text 1117 dmgstartts Question 2005200558 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200567 Demographic Survey +AIREADI_REDCAP:demographics_survey.dmgcmpts Demograhics Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Demograhics Survey Completed Timestamp (from REDCap) demographics_survey text 1118 dmgcmpts Question 2005200559 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200567 Demographic Survey AIREADI_REDCAP:demographics_survey.C51773.cl_maristat_C51773 Married skos:exactMatch OMOP:45876756 Married semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation demographics_survey radio cl_maristat 1881 C51773 cl_maristat_C51773 Answer 45876756 Meas Value LOINC Answer LA48-4 S No open-source Yes AIREADI_REDCAP:demographics_survey.C51774.cl_maristat_C51774 Single skos:exactMatch OMOP:45879879 Single semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation demographics_survey radio cl_maristat 1882 C51774 cl_maristat_C51774 Answer 45879879 Meas Value LOINC Answer LA17717-2 S No open-source Yes AIREADI_REDCAP:demographics_survey.C51776.cl_maristat_C51776 Divorced skos:exactMatch OMOP:45883375 Divorced semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation demographics_survey radio cl_maristat 1883 C51776 cl_maristat_C51776 Answer 45883375 Meas Value LOINC Answer LA51-8 S No open-source Yes @@ -136,8 +136,8 @@ AIREADI_REDCAP:diabetes_survey.dmlfrveg In a typical day, how many servings of f AIREADI_REDCAP:diabetes_survey.dmledu How often would you say that you engage in diabetes health education? (Examples: consulting with a dietician, attending support groups, reading books on diabetes, using diabetes-focused websites, watching TV shows on health, or using health-focused apps on your phone or tablet) skos:exactMatch OMOP:2005200307 How often would you say that you engage in diabetes health education? (Examples: consulting with a dietician, attending support groups, reading books on diabetes, using diabetes-focused websites, watching TV shows on health, or using health-focused apps on your phone or tablet) semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation diabetes_survey radio 1231 dmledu Question 2005200307 2005200307 Observation AIREADI Survey S Yes open-source Yes AIREADI_REDCAP:diabetes_survey.dmlfeet How often do you inspect your feet? skos:exactMatch OMOP:2005200308 How often do you inspect your feet? semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation diabetes_survey radio 1232 dmlfeet Question 2005200308 2005200308 Observation AIREADI Survey S Yes open-source Yes AIREADI_REDCAP:diabetes_survey.dmlmd Which of the following options best describes you with respect to physician care and medications? skos:exactMatch OMOP:2005200309 Which of the following options best describes you with respect to physician care and medications? semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation diabetes_survey radio 1233 dmlmd Question 2005200309 2005200309 Observation AIREADI Survey S Yes open-source Yes -AIREADI_REDCAP:diabetes_survey.dmlstartts Diabetes Survey Started Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Diabetes Survey Started Timestamp (from REDCap) diabetes_survey text 1234 dmlstartts Question 2005200558 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200572 Diabetes Survey -AIREADI_REDCAP:diabetes_survey.dmlcmpts Diabetes Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Diabetes Survey Completed Timestamp (from REDCap) diabetes_survey text 1235 dmlcmpts Question 2005200559 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200572 Diabetes Survey +AIREADI_REDCAP:diabetes_survey.dmlstartts Diabetes Survey Started Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Diabetes Survey Started Timestamp (from REDCap) diabetes_survey text 1234 dmlstartts Question 2005200558 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200572 Diabetes Survey +AIREADI_REDCAP:diabetes_survey.dmlcmpts Diabetes Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Diabetes Survey Completed Timestamp (from REDCap) diabetes_survey text 1235 dmlcmpts Question 2005200559 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200572 Diabetes Survey AIREADI_REDCAP:diabetes_survey.10.dmlvex_10 At least 30 minutes daily 3 or more days a week skos:exactMatch OMOP:2005200312 At least 30 minutes daily 3 or more days a week semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation diabetes_survey radio dmlvex 2143 10 dmlvex_10 Answer 2005200312 2005200312 Meas Value AIREADI Answer S Yes open-source Yes AIREADI_REDCAP:diabetes_survey.5.dmlvex_5 Less than 30 minutes daily less than 3 days a week skos:exactMatch OMOP:2005200313 Less than 30 minutes daily less than 3 days a week semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation diabetes_survey radio dmlvex 2144 5 dmlvex_5 Answer 2005200313 2005200313 Meas Value AIREADI Answer S Yes open-source Yes AIREADI_REDCAP:diabetes_survey.0.dmlvex_0 Rarely or none skos:exactMatch OMOP:45883771 Rarely or never semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation diabetes_survey radio dmlvex 2145 0 dmlvex_0 Answer 45883771 Meas Value LOINC Answer LA15665-5 S No open-source Yes @@ -191,8 +191,8 @@ AIREADI_REDCAP:dietary_survey.diet7 How many times a week did you eat desserts a AIREADI_REDCAP:dietary_survey.diet8 How much margarine, butter, or meat fat do you use to season vegetables or put on potatoes, bread or corn? skos:exactMatch OMOP:2005200062 How much margarine, butter, or meat fat do you use to season vegetables or put on potatoes, bread or corn? semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation dietary_survey radio 1246 diet8 Question 2005200062 2005200062 Observation AIREADI Survey S Yes open-source Yes AIREADI_REDCAP:dietary_survey.diet9 How many servings of fruit juice did you drink each day? skos:exactMatch OMOP:2005200063 How many servings of fruit juice did you drink each day? semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation dietary_survey radio 1247 diet9 Question 2005200063 2005200063 Observation AIREADI Survey S Yes open-source Yes AIREADI_REDCAP:dietary_survey.dietscore Diet score skos:exactMatch OMOP:2005200064 Diet score semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation dietary_survey calc 1248 dietscore Question 2005200064 2005200064 Observation AIREADI Survey S Yes open-source Yes -AIREADI_REDCAP:dietary_survey.dietstartts Dietary Survey Start Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Dietary Survey Start Timestamp (from REDCap) dietary_survey text 1249 dietstartts Question 2005200558 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200573 Dietary Survey -AIREADI_REDCAP:dietary_survey.dietcmpts Dietary Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Dietary Survey Completed Timestamp (from REDCap) dietary_survey text 1250 dietcmpts Question 2005200559 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200573 Dietary Survey +AIREADI_REDCAP:dietary_survey.dietstartts Dietary Survey Start Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Dietary Survey Start Timestamp (from REDCap) dietary_survey text 1249 dietstartts Question 2005200558 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200573 Dietary Survey +AIREADI_REDCAP:dietary_survey.dietcmpts Dietary Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Dietary Survey Completed Timestamp (from REDCap) dietary_survey text 1250 dietcmpts Question 2005200559 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200573 Dietary Survey AIREADI_REDCAP:dietary_survey.0.diet1_0 Less than 1 time skos:exactMatch OMOP:2005200238 Less than 1 time semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation dietary_survey radio diet1 2183 0 diet1_0 Answer 2005200238 2005200238 Meas Value AIREADI Answer S Yes open-source Yes AIREADI_REDCAP:dietary_survey.1.diet1_1 1 to 3 times a week skos:exactMatch OMOP:45876668 1 to 3 times a week semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation dietary_survey radio diet1 2184 1 diet1_1 Answer 45876668 Meas Value LOINC Answer LA13830-7 S No open-source Yes AIREADI_REDCAP:dietary_survey.2.diet1_2 4 or more times skos:exactMatch OMOP:46238128 4 or more times semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation dietary_survey radio diet1 2185 2 diet1_2 Answer 46238128 Meas Value LOINC Answer LA23713-3 S No open-source Yes @@ -272,12 +272,12 @@ AIREADI_REDCAP:ecg.rtfliocmpdattim Date & time FLIO performed skos:closeMatch OM AIREADI_REDCAP:ecg.rtaccmpdattim Date & time Angioplex - Cirrus 5000 performed skos:closeMatch OMOP:4160030 Performed semapv:ManualMappingCuration 0.75 AI-READI REDCap SNOMED AI-READI manual_curation Date & time Angioplex - Cirrus 5000 performed ecg text 1653 rtaccmpdattim Question 4160030 Observation SNOMED Qualifier Value 398166005 S No open-source Yes 2005200601 Angioplex - Cirrus 5000 AIREADI_REDCAP:ecg.rtekgcmpdattim Date & time Cardiology - EKG - Pagewriter TC30 Cardiograp performed skos:closeMatch OMOP:4160030 Performed semapv:ManualMappingCuration 0.75 AI-READI REDCap SNOMED AI-READI manual_curation Date & time Cardiology - EKG - Pagewriter TC30 Cardiograp performed ecg text 1657 rtekgcmpdattim Question 4160030 Observation SNOMED Qualifier Value 398166005 S No open-source Yes 2005200602 Cardiology - EKG - Pagewriter TC30 Cardiograp AIREADI_REDCAP:faq_survey.faqcmpdat FAQ Survey date (date survey/form opened) skos:closeMatch OMOP:4160030 Performed semapv:ManualMappingCuration 0.75 AI-READI REDCap SNOMED AI-READI manual_curation FAQ survey date (date survey/form opened) faq_survey text 1031 faqcmpdat Question 4160030 Observation SNOMED Qualifier Value 398166005 S No open-source Yes 2005200562 FAQ Survey -AIREADI_REDCAP:faq_survey.faqstartts FAQ Survey Started Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation FAQ Survey Started Timestamp (from REDCap) faq_survey text 1035 faqstartts Question 2005200558 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200562 FAQ Survey -AIREADI_REDCAP:faq_survey.faqcmpts FAQ Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation FAQ Survey Completed Timestamp (from REDCap) faq_survey text 1036 faqcmpts Question 2005200559 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200562 FAQ Survey +AIREADI_REDCAP:faq_survey.faqstartts FAQ Survey Started Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation FAQ Survey Started Timestamp (from REDCap) faq_survey text 1035 faqstartts Question 2005200558 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200562 FAQ Survey +AIREADI_REDCAP:faq_survey.faqcmpts FAQ Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation FAQ Survey Completed Timestamp (from REDCap) faq_survey text 1036 faqcmpts Question 2005200559 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200562 FAQ Survey AIREADI_REDCAP:health_survey.mhcmpdat Health survey date skos:closeMatch OMOP:4160030 Performed semapv:ManualMappingCuration 0.75 AI-READI REDCap SNOMED AI-READI manual_curation Health survey date health_survey text 1119 mhcmpdat Question 4160030 Observation SNOMED Qualifier Value 398166005 S No open-source Yes 2005200568 Health Survey AIREADI_REDCAP:health_survey.mhoccur_mi Heart attack skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 4329847 health_survey radio 1122 mhoccur_mi Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 4329847 Myocardial infarction AIREADI_REDCAP:health_survey.mhoccur_cvdot Other heart issues (Examples: pacemaker, heart valve disease, open heart surgery) skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 2005200627 health_survey radio 1123 mhoccur_cvdot Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 2005200627 Other heart issues (Examples: pacemaker, heart valve disease, open heart surgery) -AIREADI_REDCAP:health_survey.mhoccur_strk Stroke skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 2005200628 health_survey radio 1124 mhoccur_strk Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 2005200628 Stroke +AIREADI_REDCAP:health_survey.mhoccur_strk Stroke skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 381316 health_survey radio 1124 mhoccur_strk Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 381316 Cerebrovascular accident AIREADI_REDCAP:health_survey.mhoccur_circ Circulation problems (Examples: arteriosclerosis, atherosclerosis, blood clots in lungs or leg veins) skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 2005200015 health_survey radio 1125 mhoccur_circ Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 2005200015 Circulation problems AIREADI_REDCAP:health_survey.mhoccur_clsh High blood cholesterol skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 4029305 health_survey radio 1126 mhoccur_clsh Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 4029305 Hypercholesterolemia AIREADI_REDCAP:health_survey.mhoccur_hbp High blood pressure skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 316866 health_survey radio 1127 mhoccur_hbp Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 316866 Hypertensive Disorder @@ -294,7 +294,7 @@ AIREADI_REDCAP:health_survey.mhoccur_ca Cancer (any type) skos:exactMatch OMOP:2 AIREADI_REDCAP:health_survey.mhoccur_plm Chronic pulmonary (lung) problems (Examples: emphysema, asthma, tuberculosis, asbestosis) skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 4186898 health_survey radio 1141 mhoccur_plm Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 4186898 Chronic lung disease AIREADI_REDCAP:health_survey.mhoccur_gi Digestive problems (Examples: stomach ulcer, gastrointestinal problems, hiatal hernia) skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 4201745 health_survey radio 1142 mhoccur_gi Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 4201745 Disorder of digestive system AIREADI_REDCAP:health_survey.mhoccur_ua Urinary problems (Examples: urinary tract infections, incontinence, prostate problems) skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 75865 health_survey radio 1143 mhoccur_ua Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 75865 Disorder of urinary system -AIREADI_REDCAP:health_survey.mhoccur_rnl Kidney problems skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 2005200017 health_survey radio 1144 mhoccur_rnl Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 2005200017 Kidney problems +AIREADI_REDCAP:health_survey.mhoccur_rnl Kidney problems skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 198124 health_survey radio 1144 mhoccur_rnl Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 198124 Kidney disease AIREADI_REDCAP:health_survey.mhoccur_ear Hearing impairment skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 377889 health_survey radio 1145 mhoccur_ear Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 377889 Hearing loss AIREADI_REDCAP:health_survey.mhoccur_obs Obesity skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 433736 health_survey radio 1146 mhoccur_obs Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 433736 Obesity AIREADI_REDCAP:health_survey.fh_dm2pt Were either of your parents diagnosed with Type II Diabetes? skos:exactMatch OMOP:2005200018 Were either of your parents diagnosed with Type II Diabetes? semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation health_survey radio 1147 fh_dm2pt Question 2005200018 2005200018 Observation AIREADI Survey S Yes open-source Yes @@ -310,12 +310,11 @@ AIREADI_REDCAP:health_survey.mhoccur_ded Dry eye (in one or both eyes) skos:exac AIREADI_REDCAP:health_survey.mhoccur_yn Have you been diagnosed with any conditions not listed above? (any condition, not just eyes) skos:exactMatch OMOP:2005200470 Have you been diagnosed with any conditions not listed above? (any condition, not just eyes) semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation health_survey radio 1157 mhoccur_yn Question 2005200470 2005200470 Observation AIREADI Survey S Yes open-source Yes AIREADI_REDCAP:health_survey.mhoccur_fall Have you fallen in the last 12 months? (a fall is defined as an event which results in a person coming to rest inadvertently on the ground or floor or other lower level) skos:closeMatch OMOP:40757198 Falls in the past year semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation health_survey radio 1159 mhoccur_fall Question 40757198 Observation LOINC Survey 52552-7 S No open-source Yes AIREADI_REDCAP:health_survey.mhoccur_fallot If so, how many times in the last 12 months? skos:closeMatch OMOP:4310026 Number of falls in last year semapv:ManualMappingCuration 1 AI-READI REDCap SNOMED AI-READI manual_curation health_survey text 1160 mhoccur_fallot Question 4310026 Observation SNOMED Observable Entity 391002003 S No open-source Yes -AIREADI_REDCAP:health_survey.mhstartts Health Survey Started Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Health Survey Started Timestamp (from REDCap) health_survey text 1161 mhstartts Question 2005200558 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200568 Health Survey -AIREADI_REDCAP:health_survey.mhcmpts Heath Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Heath Survey Completed Timestamp (from REDCap) health_survey text 1162 mhcmpts Question 2005200559 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200568 Health Survey +AIREADI_REDCAP:health_survey.mhstartts Health Survey Started Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Health Survey Started Timestamp (from REDCap) health_survey text 1161 mhstartts Question 2005200558 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200568 Health Survey +AIREADI_REDCAP:health_survey.mhcmpts Heath Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Heath Survey Completed Timestamp (from REDCap) health_survey text 1162 mhcmpts Question 2005200559 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200568 Health Survey AIREADI_REDCAP:health_survey.1.mhoccur_mi_1 Yes skos:exactMatch OMOP:4329847 Myocardial infarction semapv:ManualMappingCuration 1 AI-READI REDCap SNOMED AI-READI manual_curation health_survey radio mhoccur_mi 1894 1 mhoccur_mi_1 Answer 4329847 Condition SNOMED Disorder 22298006 S No open-source Yes AIREADI_REDCAP:health_survey.0.mhoccur_mi_0 No skos:exactMatch OMOP:45878245 No semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation health_survey radio mhoccur_mi 1895 0 mhoccur_mi_0 Answer 45878245 Meas Value LOINC Answer LA32-8 S No open-source Yes AIREADI_REDCAP:current_medications.cmname Medication Name skos:exactMatch OMOP:2005200481 Medication Name semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation current_medications text 1470 cmname Question 2005200481 2005200481 Observation AIREADI Survey S Yes protected Yes -AIREADI_REDCAP:current_medications.cmroute How is it taken? (ex. oral, cream, injection, etc.) skos:closeMatch OMOP:44786711 Dose form - RxNorm RXCUI of Medication semapv:ManualMappingCuration 0.75 AI-READI REDCap LOINC AI-READI manual_curation current_medications dropdown 1471 cmroute Question 44786711 Measurement LOINC Clinical Observation 74054-8 S No protected Yes AIREADI_REDCAP:current_medications.cmdos Amount taken (Dose) skos:closeMatch OMOP:4162374 Drug dose semapv:ManualMappingCuration 1 AI-READI REDCap SNOMED AI-READI manual_curation current_medications text 1473 cmdos Question 4162374 Observation SNOMED Clinical Finding 398232005 S No protected Yes AIREADI_REDCAP:current_medications.cmdosu Unit (Record the dose unit of the dose of concomitant medication/treatment/therapy taken (e.g., mg.)). skos:exactMatch OMOP:2005200221 Unit (Record the dose unit of the dose of concomitant medication/treatment/therapy taken (e.g., mg.)). semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation current_medications dropdown 1474 cmdosu Question 2005200221 2005200221 Observation AIREADI Clinical Observation S Yes protected Yes AIREADI_REDCAP:current_medications.cmdosfrq Frequency taken or applied: skos:closeMatch OMOP:3042548 Current medication, Frequency semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation current_medications dropdown 1475 cmdosfrq Question 3042548 Observation LOINC Claims Attachment 52810-9 S No protected Yes @@ -324,7 +323,7 @@ AIREADI_REDCAP:health_survey.777.mhoccur_mi_777 Prefer not to say skos:exactMatc AIREADI_REDCAP:health_survey.1.mhoccur_cvdot_1 Yes skos:exactMatch OMOP:2005200627 Other heart issues (Examples: pacemaker, heart valve disease, open heart surgery) semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation health_survey radio mhoccur_cvdot 1897 1 mhoccur_cvdot_1 Answer 2005200627 2005200627 Condition AIREADI Disorder S Yes open-source Yes AIREADI_REDCAP:health_survey.0.mhoccur_cvdot_0 No skos:exactMatch OMOP:45878245 No semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation health_survey radio mhoccur_cvdot 1898 0 mhoccur_cvdot_0 Answer 45878245 Meas Value LOINC Answer LA32-8 S No open-source Yes AIREADI_REDCAP:health_survey.777.mhoccur_cvdot_777 Prefer not to say skos:exactMatch OMOP:36311156 Prefer not to say semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation health_survey radio mhoccur_cvdot 1899 777 mhoccur_cvdot_777 Answer 36311156 Meas Value LOINC Answer LA28803-7 S No open-source Yes -AIREADI_REDCAP:health_survey.1.mhoccur_strk_1 Yes skos:exactMatch OMOP:2005200628 Stroke semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation health_survey radio mhoccur_strk 1900 1 mhoccur_strk_1 Answer 2005200628 2005200628 Condition AIREADI Disorder S Yes open-source Yes +AIREADI_REDCAP:health_survey.1.mhoccur_strk_1 Yes skos:exactMatch OMOP:381316 Cerebrovascular accident semapv:ManualMappingCuration 1 AI-READI REDCap SNOMED AI-READI manual_curation health_survey radio mhoccur_strk 1900 1 mhoccur_strk_1 Answer 381316 Condition SNOMED Disorder 230690007 S No open-source Yes AIREADI_REDCAP:health_survey.0.mhoccur_strk_0 No skos:exactMatch OMOP:45878245 No semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation health_survey radio mhoccur_strk 1901 0 mhoccur_strk_0 Answer 45878245 Meas Value LOINC Answer LA32-8 S No open-source Yes AIREADI_REDCAP:health_survey.777.mhoccur_strk_777 Prefer not to say skos:exactMatch OMOP:36311156 Prefer not to say semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation health_survey radio mhoccur_strk 1902 777 mhoccur_strk_777 Answer 36311156 Meas Value LOINC Answer LA28803-7 S No open-source Yes AIREADI_REDCAP:health_survey.1.mhoccur_circ_1 Yes skos:exactMatch OMOP:2005200015 Circulation problems (Examples: arteriosclerosis, atherosclerosis, blood clots in lungs or leg veins) semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation health_survey radio mhoccur_circ 1903 1 mhoccur_circ_1 Answer 2005200015 2005200015 Condition AIREADI Disorder S Yes open-source Yes @@ -376,7 +375,7 @@ AIREADI_REDCAP:health_survey.777.mhoccur_gi_777 Prefer not to say skos:exactMatc AIREADI_REDCAP:health_survey.1.mhoccur_ua_1 Yes skos:closeMatch OMOP:75865 Disorder of urinary system semapv:ManualMappingCuration 0.75 AI-READI REDCap SNOMED AI-READI manual_curation health_survey radio mhoccur_ua 1949 1 mhoccur_ua_1 Answer 75865 Condition SNOMED Disorder 128606002 S No open-source Yes AIREADI_REDCAP:health_survey.0.mhoccur_ua_0 No skos:exactMatch OMOP:45878245 No semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation health_survey radio mhoccur_ua 1950 0 mhoccur_ua_0 Answer 45878245 Meas Value LOINC Answer LA32-8 S No open-source Yes AIREADI_REDCAP:health_survey.777.mhoccur_ua_777 Prefer not to say skos:exactMatch OMOP:36311156 Prefer not to say semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation health_survey radio mhoccur_ua 1951 777 mhoccur_ua_777 Answer 36311156 Meas Value LOINC Answer LA28803-7 S No open-source Yes -AIREADI_REDCAP:health_survey.1.mhoccur_rnl_1 Yes skos:exactMatch OMOP:2005200017 Kidney problems semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation health_survey radio mhoccur_rnl 1952 1 mhoccur_rnl_1 Answer 2005200017 2005200017 Condition AIREADI Disorder S Yes open-source Yes +AIREADI_REDCAP:health_survey.1.mhoccur_rnl_1 Yes skos:closeMatch OMOP:198124 Kidney disease semapv:ManualMappingCuration 0.75 AI-READI REDCap SNOMED AI-READI manual_curation health_survey radio mhoccur_rnl 1952 1 mhoccur_rnl_1 Answer 198124 Condition SNOMED Disorder 90708001 S No open-source Yes AIREADI_REDCAP:health_survey.0.mhoccur_rnl_0 No skos:exactMatch OMOP:45878245 No semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation health_survey radio mhoccur_rnl 1953 0 mhoccur_rnl_0 Answer 45878245 Meas Value LOINC Answer LA32-8 S No open-source Yes AIREADI_REDCAP:health_survey.777.mhoccur_rnl_777 Prefer not to say skos:exactMatch OMOP:36311156 Prefer not to say semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation health_survey radio mhoccur_rnl 1954 777 mhoccur_rnl_777 Answer 36311156 Meas Value LOINC Answer LA28803-7 S No open-source Yes AIREADI_REDCAP:health_survey.1.mhoccur_ear_1 Yes skos:exactMatch OMOP:377889 Hearing loss semapv:ManualMappingCuration 1 AI-READI REDCap SNOMED AI-READI manual_curation health_survey radio mhoccur_ear 1955 1 mhoccur_ear_1 Answer 377889 Condition SNOMED Disorder 15188001 S No open-source Yes @@ -616,42 +615,42 @@ AIREADI_REDCAP:meds_assessment.cm_dcg Have you taken decongestants, such as cold AIREADI_REDCAP:meds_assessment.cm_slp Have you taken sleeping pills in the past 2 weeks? skos:exactMatch OMOP:2005200150 Have you taken sleeping pills in the past 2 weeks? semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation meds_assessment radio 1466 cm_slp Question 2005200150 2005200150 Observation AIREADI Survey S Yes open-source Yes AIREADI_REDCAP:meds_assessment.0.cm_asp_0 No skos:exactMatch OMOP:45878245 No semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_asp 2949 0 cm_asp_0 Answer 45878245 Meas Value LOINC Answer LA32-8 S No open-source Yes AIREADI_REDCAP:meds_assessment.1.cm_asp_1 Every day skos:exactMatch OMOP:45881677 Every day semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_asp 2950 1 cm_asp_1 Answer 45881677 Meas Value LOINC Answer LA14799-3 S No open-source Yes -AIREADI_REDCAP:meds_assessment.2.cm_asp_2 A few days (<1 day/week) skos:closeMatch OMOP:45884557 Less than a day semapv:ManualMappingCuration 0.75 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_asp 2951 2 cm_asp_2 Answer 45884557 Meas Value LOINC Answer LA14482-6 S No open-source Yes +AIREADI_REDCAP:meds_assessment.2.cm_asp_2 A few days (<1 day/week) skos:exactMatch OMOP:36210209 Less than once a week semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_asp 2951 2 cm_asp_2 Answer 36210209 Meas Value LOINC Answer LA27722-0 S No open-source Yes AIREADI_REDCAP:meds_assessment.3.cm_asp_3 Some days (1-2 days/week) skos:closeMatch OMOP:1620467 A few days (1-2 days) semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_asp 2952 3 cm_asp_3 Answer 1620467 Meas Value LOINC Answer LA31669-7 S No open-source Yes AIREADI_REDCAP:meds_assessment.4.cm_asp_4 Most days (3-4 days/week) skos:closeMatch OMOP:1620862 Most days (3-4 days) semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_asp 2953 4 cm_asp_4 Answer 1620862 Meas Value LOINC Answer LA31670-5 S No open-source Yes AIREADI_REDCAP:meds_assessment.99.cm_asp_99 Don't know/not sure skos:exactMatch OMOP:45876636 Don't know semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_asp 2954 99 cm_asp_99 Answer 45876636 Meas Value LOINC Answer LA12688-0 S No open-source Yes AIREADI_REDCAP:meds_assessment.777.cm_asp_777 Decline to answer skos:exactMatch OMOP:36311156 Prefer not to say semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_asp 2955 777 cm_asp_777 Answer 36311156 Meas Value LOINC Answer LA28803-7 S No open-source Yes AIREADI_REDCAP:meds_assessment.0.cm_act_0 No skos:exactMatch OMOP:45878245 No semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_act 2956 0 cm_act_0 Answer 45878245 Meas Value LOINC Answer LA32-8 S No open-source Yes AIREADI_REDCAP:meds_assessment.1.cm_act_1 Every day skos:exactMatch OMOP:45881677 Every day semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_act 2957 1 cm_act_1 Answer 45881677 Meas Value LOINC Answer LA14799-3 S No open-source Yes -AIREADI_REDCAP:meds_assessment.2.cm_act_2 A few days (<1 day/week) skos:closeMatch OMOP:45884557 Less than a day semapv:ManualMappingCuration 0.75 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_act 2958 2 cm_act_2 Answer 45884557 Meas Value LOINC Answer LA14482-6 S No open-source Yes +AIREADI_REDCAP:meds_assessment.2.cm_act_2 A few days (<1 day/week) skos:exactMatch OMOP:36210209 Less than once a week semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_act 2958 2 cm_act_2 Answer 36210209 Meas Value LOINC Answer LA27722-0 S No open-source Yes AIREADI_REDCAP:meds_assessment.3.cm_act_3 Some days (1-2 days/week) skos:closeMatch OMOP:1620467 A few days (1-2 days) semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_act 2959 3 cm_act_3 Answer 1620467 Meas Value LOINC Answer LA31669-7 S No open-source Yes AIREADI_REDCAP:meds_assessment.4.cm_act_4 Most days (3-4 days/week) skos:closeMatch OMOP:1620862 Most days (3-4 days) semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_act 2960 4 cm_act_4 Answer 1620862 Meas Value LOINC Answer LA31670-5 S No open-source Yes AIREADI_REDCAP:meds_assessment.99.cm_act_99 Don't know/not sure skos:exactMatch OMOP:45876636 Don't know semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_act 2961 99 cm_act_99 Answer 45876636 Meas Value LOINC Answer LA12688-0 S No open-source Yes AIREADI_REDCAP:meds_assessment.777.cm_act_777 Decline to answer skos:exactMatch OMOP:36311156 Prefer not to say semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_act 2962 777 cm_act_777 Answer 36311156 Meas Value LOINC Answer LA28803-7 S No open-source Yes AIREADI_REDCAP:meds_assessment.0.cm_ibp_0 No skos:exactMatch OMOP:45878245 No semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_ibp 2963 0 cm_ibp_0 Answer 45878245 Meas Value LOINC Answer LA32-8 S No open-source Yes AIREADI_REDCAP:meds_assessment.1.cm_ibp_1 Every day skos:exactMatch OMOP:45881677 Every day semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_ibp 2964 1 cm_ibp_1 Answer 45881677 Meas Value LOINC Answer LA14799-3 S No open-source Yes -AIREADI_REDCAP:meds_assessment.2.cm_ibp_2 A few days (<1 day/week) skos:closeMatch OMOP:45884557 Less than a day semapv:ManualMappingCuration 0.75 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_ibp 2965 2 cm_ibp_2 Answer 45884557 Meas Value LOINC Answer LA14482-6 S No open-source Yes +AIREADI_REDCAP:meds_assessment.2.cm_ibp_2 A few days (<1 day/week) skos:exactMatch OMOP:36210209 Less than once a week semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_ibp 2965 2 cm_ibp_2 Answer 36210209 Meas Value LOINC Answer LA27722-0 S No open-source Yes AIREADI_REDCAP:meds_assessment.3.cm_ibp_3 Some days (1-2 days/week) skos:closeMatch OMOP:1620467 A few days (1-2 days) semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_ibp 2966 3 cm_ibp_3 Answer 1620467 Meas Value LOINC Answer LA31669-7 S No open-source Yes AIREADI_REDCAP:meds_assessment.4.cm_ibp_4 Most days (3-4 days/week) skos:closeMatch OMOP:1620862 Most days (3-4 days) semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_ibp 2967 4 cm_ibp_4 Answer 1620862 Meas Value LOINC Answer LA31670-5 S No open-source Yes AIREADI_REDCAP:meds_assessment.99.cm_ibp_99 Don't know/not sure skos:exactMatch OMOP:45876636 Don't know semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_ibp 2968 99 cm_ibp_99 Answer 45876636 Meas Value LOINC Answer LA12688-0 S No open-source Yes AIREADI_REDCAP:meds_assessment.777.cm_ibp_777 Decline to answer skos:exactMatch OMOP:36311156 Prefer not to say semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_ibp 2969 777 cm_ibp_777 Answer 36311156 Meas Value LOINC Answer LA28803-7 S No open-source Yes AIREADI_REDCAP:meds_assessment.0.cm_ant_0 No skos:exactMatch OMOP:45878245 No semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_ant 2970 0 cm_ant_0 Answer 45878245 Meas Value LOINC Answer LA32-8 S No open-source Yes AIREADI_REDCAP:meds_assessment.1.cm_ant_1 Every day skos:exactMatch OMOP:45881677 Every day semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_ant 2971 1 cm_ant_1 Answer 45881677 Meas Value LOINC Answer LA14799-3 S No open-source Yes -AIREADI_REDCAP:meds_assessment.2.cm_ant_2 A few days (<1 day/week) skos:closeMatch OMOP:45884557 Less than a day semapv:ManualMappingCuration 0.75 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_ant 2972 2 cm_ant_2 Answer 45884557 Meas Value LOINC Answer LA14482-6 S No open-source Yes +AIREADI_REDCAP:meds_assessment.2.cm_ant_2 A few days (<1 day/week) skos:exactMatch OMOP:36210209 Less than once a week semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_ant 2972 2 cm_ant_2 Answer 36210209 Meas Value LOINC Answer LA27722-0 S No open-source Yes AIREADI_REDCAP:meds_assessment.3.cm_ant_3 Some days (1-2 days/week) skos:closeMatch OMOP:1620467 A few days (1-2 days) semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_ant 2973 3 cm_ant_3 Answer 1620467 Meas Value LOINC Answer LA31669-7 S No open-source Yes AIREADI_REDCAP:meds_assessment.4.cm_ant_4 Most days (3-4 days/week) skos:closeMatch OMOP:1620862 Most days (3-4 days) semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_ant 2974 4 cm_ant_4 Answer 1620862 Meas Value LOINC Answer LA31670-5 S No open-source Yes AIREADI_REDCAP:meds_assessment.99.cm_ant_99 Don't know/not sure skos:exactMatch OMOP:45876636 Don't know semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_ant 2975 99 cm_ant_99 Answer 45876636 Meas Value LOINC Answer LA12688-0 S No open-source Yes AIREADI_REDCAP:meds_assessment.777.cm_ant_777 Decline to answer skos:exactMatch OMOP:36311156 Prefer not to say semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_ant 2976 777 cm_ant_777 Answer 36311156 Meas Value LOINC Answer LA28803-7 S No open-source Yes AIREADI_REDCAP:meds_assessment.0.cm_dcg_0 No skos:exactMatch OMOP:45878245 No semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_dcg 2977 0 cm_dcg_0 Answer 45878245 Meas Value LOINC Answer LA32-8 S No open-source Yes AIREADI_REDCAP:meds_assessment.1.cm_dcg_1 Every day skos:exactMatch OMOP:45881677 Every day semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_dcg 2978 1 cm_dcg_1 Answer 45881677 Meas Value LOINC Answer LA14799-3 S No open-source Yes -AIREADI_REDCAP:meds_assessment.2.cm_dcg_2 A few days (<1 day/week) skos:closeMatch OMOP:45884557 Less than a day semapv:ManualMappingCuration 0.75 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_dcg 2979 2 cm_dcg_2 Answer 45884557 Meas Value LOINC Answer LA14482-6 S No open-source Yes +AIREADI_REDCAP:meds_assessment.2.cm_dcg_2 A few days (<1 day/week) skos:exactMatch OMOP:36210209 Less than once a week semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_dcg 2979 2 cm_dcg_2 Answer 36210209 Meas Value LOINC Answer LA27722-0 S No open-source Yes AIREADI_REDCAP:meds_assessment.3.cm_dcg_3 Some days (1-2 days/week) skos:closeMatch OMOP:1620467 A few days (1-2 days) semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_dcg 2980 3 cm_dcg_3 Answer 1620467 Meas Value LOINC Answer LA31669-7 S No open-source Yes AIREADI_REDCAP:meds_assessment.4.cm_dcg_4 Most days (3-4 days/week) skos:closeMatch OMOP:1620862 Most days (3-4 days) semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_dcg 2981 4 cm_dcg_4 Answer 1620862 Meas Value LOINC Answer LA31670-5 S No open-source Yes AIREADI_REDCAP:meds_assessment.99.cm_dcg_99 Don't know/not sure skos:exactMatch OMOP:45876636 Don't know semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_dcg 2982 99 cm_dcg_99 Answer 45876636 Meas Value LOINC Answer LA12688-0 S No open-source Yes AIREADI_REDCAP:meds_assessment.777.cm_dcg_777 Decline to answer skos:exactMatch OMOP:36311156 Prefer not to say semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_dcg 2983 777 cm_dcg_777 Answer 36311156 Meas Value LOINC Answer LA28803-7 S No open-source Yes AIREADI_REDCAP:meds_assessment.0.cm_slp_0 No skos:exactMatch OMOP:45878245 No semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_slp 2984 0 cm_slp_0 Answer 45878245 Meas Value LOINC Answer LA32-8 S No open-source Yes AIREADI_REDCAP:meds_assessment.1.cm_slp_1 Every day skos:exactMatch OMOP:45881677 Every day semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_slp 2985 1 cm_slp_1 Answer 45881677 Meas Value LOINC Answer LA14799-3 S No open-source Yes -AIREADI_REDCAP:meds_assessment.2.cm_slp_2 A few days (<1 day/week) skos:closeMatch OMOP:45884557 Less than a day semapv:ManualMappingCuration 0.75 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_slp 2986 2 cm_slp_2 Answer 45884557 Meas Value LOINC Answer LA14482-6 S No open-source Yes +AIREADI_REDCAP:meds_assessment.2.cm_slp_2 A few days (<1 day/week) skos:exactMatch OMOP:36210209 Less than once a week semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_slp 2986 2 cm_slp_2 Answer 36210209 Meas Value LOINC Answer LA27722-0 S No open-source Yes AIREADI_REDCAP:meds_assessment.3.cm_slp_3 Some days (1-2 days/week) skos:closeMatch OMOP:1620467 A few days (1-2 days) semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_slp 2987 3 cm_slp_3 Answer 1620467 Meas Value LOINC Answer LA31669-7 S No open-source Yes AIREADI_REDCAP:meds_assessment.4.cm_slp_4 Most days (3-4 days/week) skos:closeMatch OMOP:1620862 Most days (3-4 days) semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_slp 2988 4 cm_slp_4 Answer 1620862 Meas Value LOINC Answer LA31670-5 S No open-source Yes AIREADI_REDCAP:meds_assessment.99.cm_slp_99 Don't know/not sure skos:exactMatch OMOP:45876636 Don't know semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation meds_assessment radio cm_slp 2989 99 cm_slp_99 Answer 45876636 Meas Value LOINC Answer LA12688-0 S No open-source Yes @@ -698,8 +697,8 @@ AIREADI_REDCAP:ophthalmic_survey.via3 Because of your eyesight, how much difficu AIREADI_REDCAP:ophthalmic_survey.via4 When was the last time you had your eyes examined by an eye care provider (ophthalmologist or optometrist)? skos:closeMatch OMOP:40758529 Date of last eye examination semapv:ManualMappingCuration 0.75 AI-READI REDCap LOINC AI-READI manual_curation ophthalmic_survey radio 1257 via4 Question 40758529 Observation LOINC Clinical Observation 55400-6 S No open-source Yes AIREADI_REDCAP:ophthalmic_survey.via5 You have indicated that you have not seen an eye care professional in the past 12 months. What is the main reason you have not visited an eye care professional in the past 12 months? skos:exactMatch OMOP:2005200069 You have indicated that you have not seen an eye care professional in the past 12 months. What is the main reason you have not visited an eye care professional in the past 12 months? semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation ophthalmic_survey radio 1258 via5 Question 2005200069 2005200069 Observation AIREADI Survey S Yes open-source Yes AIREADI_REDCAP:ophthalmic_survey.via6 When was the last time you had an eye exam in which the pupils were dilated? (This would have made you temporarily sensitive to bright light) skos:exactMatch OMOP:2005200070 When was the last time you had an eye exam in which the pupils were dilated? (This would have made you temporarily sensitive to bright light) semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation ophthalmic_survey radio 1259 via6 Question 2005200070 2005200070 Observation AIREADI Survey S Yes open-source Yes -AIREADI_REDCAP:ophthalmic_survey.viastartts Ophthalmic Survey Started Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Ophthalmic Survey Started Timestamp (from REDCap) ophthalmic_survey text 1260 viastartts Question 2005200558 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200574 Ophthalmic Survey -AIREADI_REDCAP:ophthalmic_survey.viacmpts Ophthalmic Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Ophthalmic Survey Completed Timestamp (from REDCap) ophthalmic_survey text 1261 viacmpts Question 2005200559 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200574 Ophthalmic Survey +AIREADI_REDCAP:ophthalmic_survey.viastartts Ophthalmic Survey Started Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Ophthalmic Survey Started Timestamp (from REDCap) ophthalmic_survey text 1260 viastartts Question 2005200558 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200574 Ophthalmic Survey +AIREADI_REDCAP:ophthalmic_survey.viacmpts Ophthalmic Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Ophthalmic Survey Completed Timestamp (from REDCap) ophthalmic_survey text 1261 viacmpts Question 2005200559 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200574 Ophthalmic Survey AIREADI_REDCAP:ophthalmic_survey.1.via1_1 No difficulty skos:exactMatch OMOP:45878948 No difficulty semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation ophthalmic_survey radio via1 2219 1 via1_1 Answer 45878948 Meas Value LOINC Answer LA15227-4 S No open-source Yes AIREADI_REDCAP:ophthalmic_survey.2.via1_2 A little difficulty skos:exactMatch OMOP:45883842 A little difficulty semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation ophthalmic_survey radio via1 2220 2 via1_2 Answer 45883842 Meas Value LOINC Answer LA15725-7 S No open-source Yes AIREADI_REDCAP:ophthalmic_survey.3.via1_3 Moderate difficulty skos:exactMatch OMOP:45879201 Moderate difficulty semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation ophthalmic_survey radio via1 2221 3 via1_3 Answer 45879201 Meas Value LOINC Answer LA15726-5 S No open-source Yes @@ -744,8 +743,8 @@ AIREADI_REDCAP:paid5_dm_survey.paid_wr Worrying about the future and the possibi AIREADI_REDCAP:paid5_dm_survey.paid_eng Feeling that diabetes is taking up too much of your mental and physical energy every day skos:exactMatch OMOP:2005200047 Feeling that diabetes is taking up too much of your mental and physical energy every day semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation paid5_dm_survey radio 1216 paid_eng Question 2005200047 2005200047 Observation AIREADI Survey S Yes open-source Yes AIREADI_REDCAP:paid5_dm_survey.paid_cml Coping with complications of diabetes skos:exactMatch OMOP:2005200048 Coping with complications of diabetes semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation paid5_dm_survey radio 1217 paid_cml Question 2005200048 2005200048 Observation AIREADI Survey S Yes open-source Yes AIREADI_REDCAP:paid5_dm_survey.paidscore PAID score skos:exactMatch OMOP:2005200049 PAID score semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation paid5_dm_survey calc 1218 paidscore Question 2005200049 2005200049 Observation AIREADI Survey S Yes open-source Yes -AIREADI_REDCAP:paid5_dm_survey.paidstartts PAID-5 DM Survey Start Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation PAID-5 DM Survey Start Timestamp (from REDCap) paid5_dm_survey text 1219 paidstartts Question 2005200558 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200571 PAID-5 DM Survey -AIREADI_REDCAP:paid5_dm_survey.paidcmpts PAID-5 DM Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation PAID-5 DM Survey Completed Timestamp (from REDCap) paid5_dm_survey text 1220 paidcmpts Question 2005200559 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200571 PAID-5 DM Survey +AIREADI_REDCAP:paid5_dm_survey.paidstartts PAID-5 DM Survey Start Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation PAID-5 DM Survey Start Timestamp (from REDCap) paid5_dm_survey text 1219 paidstartts Question 2005200558 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200571 PAID-5 DM Survey +AIREADI_REDCAP:paid5_dm_survey.paidcmpts PAID-5 DM Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation PAID-5 DM Survey Completed Timestamp (from REDCap) paid5_dm_survey text 1220 paidcmpts Question 2005200559 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200571 PAID-5 DM Survey AIREADI_REDCAP:paid5_dm_survey.0.paid_scrd_0 Not a problem skos:exactMatch OMOP:2005200213 Not a problem semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation paid5_dm_survey radio paid_scrd 2118 0 paid_scrd_0 Answer 2005200213 2005200213 Meas Value AIREADI Answer S Yes open-source Yes AIREADI_REDCAP:paid5_dm_survey.1.paid_scrd_1 Minor problem skos:exactMatch OMOP:2005200214 Minor problem semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation paid5_dm_survey radio paid_scrd 2119 1 paid_scrd_1 Answer 2005200214 2005200214 Meas Value AIREADI Answer S Yes open-source Yes AIREADI_REDCAP:paid5_dm_survey.2.paid_scrd_2 Moderate problem skos:exactMatch OMOP:2005200215 Moderate problem semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation paid5_dm_survey radio paid_scrd 2120 2 paid_scrd_2 Answer 2005200215 2005200215 Meas Value AIREADI Answer S Yes open-source Yes @@ -799,8 +798,8 @@ AIREADI_REDCAP:physical_assessment.paate_6hr Have you had anything to eat or dri AIREADI_REDCAP:physical_assessment.1.paate_6hr_1 Yes skos:exactMatch OMOP:45877994 Yes semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation physical_assessment yesno paate_6hr 1 paate_6hr_1 Answer 45877994 Meas Value LOINC Answer LA33-6 S No open-source Yes AIREADI_REDCAP:physical_assessment.0.paate_6hr_0 No skos:exactMatch OMOP:45878245 No semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation physical_assessment yesno paate_6hr 0 paate_6hr_0 Answer 45878245 Meas Value LOINC Answer LA32-8 S No open-source Yes AIREADI_REDCAP:preconsent_survey.preconcmpdat Pre-consent survey/form date (date survey/form opened) skos:closeMatch OMOP:4160030 Performed semapv:ManualMappingCuration 0.75 AI-READI REDCap SNOMED AI-READI manual_curation Pre-consent survey/form date (date survey/form opened) preconsent_survey text 1065 preconcmpdat Question 4160030 Observation SNOMED Qualifier Value 398166005 S No open-source Yes 2005200564 Pre-consent Survey -AIREADI_REDCAP:preconsent_survey.preconstartts Pre-consent Survey Started Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Pre-consent Survey Started Timestamp (from REDCap) preconsent_survey text 1069 preconstartts Question 2005200558 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200564 Pre-consent Survey -AIREADI_REDCAP:preconsent_survey.preconcmpts Pre-consent Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Pre-consent Survey Completed Timestamp (from REDCap) preconsent_survey text 1070 preconcmpts Question 2005200559 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200564 Pre-consent Survey +AIREADI_REDCAP:preconsent_survey.preconstartts Pre-consent Survey Started Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Pre-consent Survey Started Timestamp (from REDCap) preconsent_survey text 1069 preconstartts Question 2005200558 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200564 Pre-consent Survey +AIREADI_REDCAP:preconsent_survey.preconcmpts Pre-consent Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Pre-consent Survey Completed Timestamp (from REDCap) preconsent_survey text 1070 preconcmpts Question 2005200559 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200564 Pre-consent Survey AIREADI_REDCAP:px_food_insecurity_survey.pxsficmpdat PhenX Food Insecurity survey date skos:closeMatch OMOP:4160030 Performed semapv:ManualMappingCuration 0.75 AI-READI REDCap SNOMED AI-READI manual_curation PhenX Food Insecurity survey date px_food_insecurity_survey text 1313 pxsficmpdat Question 4160030 Observation SNOMED Qualifier Value 398166005 S No open-source Yes 2005200584 PhenX Food Insecurity Survey AIREADI_REDCAP:px_food_insecurity_survey.pxfi1 "The first statement is, ""The food that (I/we) bought just didn't last, and (I/we) didn't have money to get more."" Was that often, sometimes, or never true for (you/your household) in the last 12 months?" skos:exactMatch OMOP:36306143 Within the past 12 months the food we bought just didn't last and we didn't have money to get more [U.S. FSS] semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_food_insecurity_survey radio 1316 pxfi1 Question 36306143 Observation LOINC Survey 88123-5 S No open-source Yes AIREADI_REDCAP:px_food_insecurity_survey.pxfi2 """(I/we) couldn't afford to eat balanced meals."" Was that often, sometimes, or never true for (you/your household) in the last 12 months?" skos:exactMatch OMOP:36660487 In the last 12 months, we couldn't afford to eat balanced meals [U.S. FSS] semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_food_insecurity_survey radio 1317 pxfi2 Question 36660487 Observation LOINC Survey 95248-1 S No open-source Yes @@ -808,8 +807,8 @@ AIREADI_REDCAP:px_food_insecurity_survey.pxfi3 In the last year, did you and/or AIREADI_REDCAP:px_food_insecurity_survey.food_insecurity_change_diet_frequency How often did this happen - almost every month, some months but not every month, or in only 1 or 2 months? skos:closeMatch OMOP:36660018 In the last 12 months, how often did you cut the size of your meals or skip meals because there wasn't enough money for food [U.S. FSS] semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_food_insecurity_survey radio 1319 food_insecurity_change_diet_frequency Question 36660018 Observation LOINC Survey 95250-7 S No open-source Yes AIREADI_REDCAP:px_food_insecurity_survey.pxfi4 In the last 12 months, did you ever eat less than you felt you should because there wasn't enough money to buy food? skos:exactMatch OMOP:36659800 In the last 12 months, did you ever eat less than you felt you should because there wasn't enough money for food [U.S. FSS] semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_food_insecurity_survey radio 1320 pxfi4 Question 36659800 Observation LOINC Survey 95251-5 S No open-source Yes AIREADI_REDCAP:px_food_insecurity_survey.pxfi5 In the last 12 months, were you ever hungry but didn't eat because you couldn't afford enough food? skos:exactMatch OMOP:36660509 In the last 12 months, were you ever hungry but didn't eat because there wasn't enough money for food [U.S. FSS] semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_food_insecurity_survey radio 1321 pxfi5 Question 36660509 Observation LOINC Survey 95252-3 S No open-source Yes -AIREADI_REDCAP:px_food_insecurity_survey.pxfistartts PhenX Food Insecurity Survey Started Timestamp (from REDCap) skos:exactMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation PhenX Food Insecurity Survey Started Timestamp (from REDCap) px_food_insecurity_survey text 1322 pxfistartts Question 2005200558 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200584 PhenX Food Insecurity Survey -AIREADI_REDCAP:px_food_insecurity_survey.pxsficmpts PhenX Food Insecurity Survey Completed Timestamp (from REDCap) skos:exactMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation PhenX Food Insecurity Survey Completed Timestamp (from REDCap) px_food_insecurity_survey text 1323 pxsficmpts Question 2005200559 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200584 PhenX Food Insecurity Survey +AIREADI_REDCAP:px_food_insecurity_survey.pxfistartts PhenX Food Insecurity Survey Started Timestamp (from REDCap) skos:exactMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation PhenX Food Insecurity Survey Started Timestamp (from REDCap) px_food_insecurity_survey text 1322 pxfistartts Question 2005200558 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200584 PhenX Food Insecurity Survey +AIREADI_REDCAP:px_food_insecurity_survey.pxsficmpts PhenX Food Insecurity Survey Completed Timestamp (from REDCap) skos:exactMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation PhenX Food Insecurity Survey Completed Timestamp (from REDCap) px_food_insecurity_survey text 1323 pxsficmpts Question 2005200559 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200584 PhenX Food Insecurity Survey AIREADI_REDCAP:px_food_insecurity_survey.px270301_metadata PhenX MetaData skos:exactMatch OMOP:2005200102 PhenX MetaData semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation PhenX Food Insecurity MetaData px_food_insecurity_survey text 1324 px270301_metadata Question 2005200102 2005200102 Observation AIREADI Survey S Yes open-source Yes 2005200584 PhenX Food Insecurity Survey AIREADI_REDCAP:px_food_insecurity_survey.1.pxfi1_1 Often true skos:exactMatch OMOP:36309834 Often true semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_food_insecurity_survey radio pxfi1 2473 1 pxfi1_1 Answer 36309834 Meas Value LOINC Answer LA28397-0 S No open-source Yes AIREADI_REDCAP:px_food_insecurity_survey.2.pxfi1_2 Sometimes true skos:exactMatch OMOP:45877955 Sometimes true semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_food_insecurity_survey radio pxfi1 2474 2 pxfi1_2 Answer 45877955 Meas Value LOINC Answer LA6729-3 S No open-source Yes @@ -919,8 +918,8 @@ AIREADI_REDCAP:px_neighborhood_environment_survey.1.pxne9_1 Strongly disagree sk AIREADI_REDCAP:px_neighborhood_environment_survey.2.pxne9_2 Somewhat disagree skos:exactMatch OMOP:45879539 Somewhat disagree semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_neighborhood_environment_survey radio pxne9 2553 2 pxne9_2 Answer 45879539 Meas Value LOINC Answer LA15234-0 S No open-source Yes AIREADI_REDCAP:px_neighborhood_environment_survey.3.pxne9_3 Somewhat agree skos:exactMatch OMOP:45884684 Somewhat agree semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_neighborhood_environment_survey radio pxne9 2554 3 pxne9_3 Answer 45884684 Meas Value LOINC Answer LA15235-7 S No open-source Yes AIREADI_REDCAP:px_neighborhood_environment_survey.4.pxne9_4 Strongly agree skos:exactMatch OMOP:45879208 Strongly agree semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_neighborhood_environment_survey radio pxne9 2555 4 pxne9_4 Answer 45879208 Meas Value LOINC Answer LA15237-3 S No open-source Yes -AIREADI_REDCAP:px_neighborhood_environment_survey.555.pxne9_555 Don't know/Not sure skos:exactMatch OMOP:45876636 Don't know semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_neighborhood_environment_survey radio pxne9_ 2556 555 pxne9__555 Answer 45876636 Meas Value LOINC Answer LA12688-0 S No open-source Yes -AIREADI_REDCAP:px_neighborhood_environment_survey.777.pxne9_777 Prefer not to say skos:exactMatch OMOP:36311156 Prefer not to say semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_neighborhood_environment_survey radio pxne9_ 2557 777 pxne9__777 Answer 36311156 Meas Value LOINC Answer LA28803-7 S No open-source Yes +AIREADI_REDCAP:px_neighborhood_environment_survey.555.pxne9_555 Don't know/Not sure skos:exactMatch OMOP:45876636 Don't know semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_neighborhood_environment_survey radio pxne9 2556 555 pxne9_555 Answer 45876636 Meas Value LOINC Answer LA12688-0 S No open-source Yes +AIREADI_REDCAP:px_neighborhood_environment_survey.777.pxne9_777 Prefer not to say skos:exactMatch OMOP:36311156 Prefer not to say semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_neighborhood_environment_survey radio pxne9 2557 777 pxne9_777 Answer 36311156 Meas Value LOINC Answer LA28803-7 S No open-source Yes AIREADI_REDCAP:px_neighborhood_environment_survey.1.pxne10_1 Strongly disagree skos:exactMatch OMOP:45882953 Strongly disagree semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_neighborhood_environment_survey radio pxne10 2558 1 pxne10_1 Answer 45882953 Meas Value LOINC Answer LA15236-5 S No open-source Yes AIREADI_REDCAP:px_neighborhood_environment_survey.2.pxne10_2 Somewhat disagree skos:exactMatch OMOP:45879539 Somewhat disagree semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_neighborhood_environment_survey radio pxne10 2559 2 pxne10_2 Answer 45879539 Meas Value LOINC Answer LA15234-0 S No open-source Yes AIREADI_REDCAP:px_neighborhood_environment_survey.3.pxne10_3 Somewhat agree skos:exactMatch OMOP:45884684 Somewhat agree semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_neighborhood_environment_survey radio pxne10 2560 3 pxne10_3 Answer 45884684 Meas Value LOINC Answer LA15235-7 S No open-source Yes @@ -1023,8 +1022,8 @@ AIREADI_REDCAP:px_racial_ethnic_discrimination_survey.pxrd51 On a scale of 1-6, AIREADI_REDCAP:px_racial_ethnic_discrimination_survey.pxrd52 In the Past Year? skos:exactMatch OMOP:2005200541 How different would your life be now if you HAD NOT BEEN treated in a racist and unfair way? In the Past Year? semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation px_racial_ethnic_discrimination_survey radio 1402 pxrd52 Question 2005200541 2005200541 Observation AIREADI Survey S Yes open-source Yes AIREADI_REDCAP:px_racial_ethnic_discrimination_survey.pxrd53 In your entire life? skos:exactMatch OMOP:2005200542 How different would your life be now if you HAD NOT BEEN treated in a racist and unfair way? In your entire life? semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation px_racial_ethnic_discrimination_survey radio 1403 pxrd53 Question 2005200542 2005200542 Observation AIREADI Survey S Yes open-source Yes AIREADI_REDCAP:px_racial_ethnic_discrimination_survey.pxrd54 On a scale of 1-6, how stressful was this for you? 1 = Not at all stressful; 6 = Extremely stressful skos:exactMatch OMOP:2005200543 How different would your life be now if you HAD NOT BEEN treated in a racist and unfair way? On a scale of 1-6, how stressful was this for you? 1 = Not at all stressful; 6 = Extremely stressful semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation px_racial_ethnic_discrimination_survey radio 1404 pxrd54 Question 2005200543 2005200543 Observation AIREADI Survey S Yes open-source Yes -AIREADI_REDCAP:px_racial_ethnic_discrimination_survey.pxrdcmpts PhenX Racial/Ethnic Discrimination Survey Completed Timestamp (from REDCap) skos:exactMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation PhenX Racial/Ethnic Discrimination Survey Completed Timestamp (from REDCap) px_racial_ethnic_discrimination_survey text 1405 pxrdcmpts Question 2005200559 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200586 PhenX Racial/Ethnic Survey -AIREADI_REDCAP:px_racial_ethnic_discrimination_survey.pxrdstartts PhenX Racial/Ethnic Discrimination Survey Started Timestamp (from REDCap) skos:exactMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation PhenX Racial/Ethnic Discrimination Survey Started Timestamp (from REDCap) px_racial_ethnic_discrimination_survey text 1406 pxrdstartts Question 2005200558 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200586 PhenX Racial/Ethnic Survey +AIREADI_REDCAP:px_racial_ethnic_discrimination_survey.pxrdcmpts PhenX Racial/Ethnic Discrimination Survey Completed Timestamp (from REDCap) skos:exactMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation PhenX Racial/Ethnic Discrimination Survey Completed Timestamp (from REDCap) px_racial_ethnic_discrimination_survey text 1405 pxrdcmpts Question 2005200559 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200586 PhenX Racial/Ethnic Survey +AIREADI_REDCAP:px_racial_ethnic_discrimination_survey.pxrdstartts PhenX Racial/Ethnic Discrimination Survey Started Timestamp (from REDCap) skos:exactMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation PhenX Racial/Ethnic Discrimination Survey Started Timestamp (from REDCap) px_racial_ethnic_discrimination_survey text 1406 pxrdstartts Question 2005200558 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200586 PhenX Racial/Ethnic Survey AIREADI_REDCAP:px_racial_ethnic_discrimination_survey.px281501_metadata PhenX Racial/Ethnic MetaData skos:exactMatch OMOP:2005200102 PhenX MetaData semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation PhenX Racial/Ethnic MetaData px_racial_ethnic_discrimination_survey text 1407 px281501_metadata Question 2005200102 2005200102 Observation AIREADI Survey S Yes open-source Yes 2005200586 PhenX Racial/Ethnic Survey AIREADI_REDCAP:px_racial_ethnic_discrimination_survey.1.pxrd1_1 Never skos:exactMatch OMOP:45876662 Never semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_racial_ethnic_discrimination_survey radio pxrd1 2605 1 pxrd1_1 Answer 45876662 Meas Value LOINC Answer LA6270-8 S No open-source Yes AIREADI_REDCAP:px_racial_ethnic_discrimination_survey.2.pxrd1_2 Once in a while skos:closeMatch OMOP:45879593 Occasionally semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_racial_ethnic_discrimination_survey radio pxrd1 2606 2 pxrd1_2 Answer 45879593 Meas Value LOINC Answer LA6483-7 S No open-source Yes @@ -1074,9 +1073,9 @@ AIREADI_REDCAP:px_racial_ethnic_discrimination_survey.4.pxrd8_4 A lot skos:exact AIREADI_REDCAP:px_racial_ethnic_discrimination_survey.5.pxrd8_5 Most of the time skos:exactMatch OMOP:45879199 Most of the time semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_racial_ethnic_discrimination_survey radio pxrd8 2650 5 pxrd8_5 Answer 45879199 Meas Value LOINC Answer LA14734-0 S No open-source Yes AIREADI_REDCAP:px_racial_ethnic_discrimination_survey.6.pxrd8_6 Almost all the time skos:closeMatch OMOP:45883838 All the time semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_racial_ethnic_discrimination_survey radio pxrd8 2651 6 pxrd8_6 Answer 45883838 Meas Value LOINC Answer LA14726-6 S No open-source Yes AIREADI_REDCAP:px_racial_ethnic_discrimination_survey.777.pxrd8_777 Prefer not to say skos:exactMatch OMOP:36311156 Prefer not to say semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_racial_ethnic_discrimination_survey radio pxrd8 2652 777 pxrd8_777 Answer 36311156 Meas Value LOINC Answer LA28803-7 S No open-source Yes -AIREADI_REDCAP:px_racial_ethnic_discrimination_survey.1.pxrd9_1 1 - Not at all stressful skos:closeMatch OMOP:36210226 Not at all bothersome semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_racial_ethnic_discrimination_survey radio pxrd9 2653 1 pxrd9_1 Answer 36210226 Meas Value LOINC Answer LA24969-0 S No open-source Yes -AIREADI_REDCAP:px_racial_ethnic_discrimination_survey.6.pxrd9_6 6 - Extremely stressful skos:closeMatch OMOP:36210124 Extremely bothersome semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_racial_ethnic_discrimination_survey radio pxrd9 2654 6 pxrd9_6 Answer 36210124 Meas Value LOINC Answer LA27766-7 S No open-source Yes -AIREADI_REDCAP:px_racial_ethnic_discrimination_survey.777.pxrd9_777 Prefer not to say skos:exactMatch OMOP:36311156 Prefer not to say semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_racial_ethnic_discrimination_survey radio pxrd9 2655 777 pxrd9_777 Answer 36311156 Meas Value LOINC Answer LA28803-7 S No open-source Yes +AIREADI_REDCAP:px_racial_ethnic_discrimination_survey.1.pdrx9_1 1 - Not at all stressful skos:closeMatch OMOP:36210226 Not at all bothersome semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_racial_ethnic_discrimination_survey radio pdrx9 2653 1 pdrx9_1 Answer 36210226 Meas Value LOINC Answer LA24969-0 S No open-source Yes +AIREADI_REDCAP:px_racial_ethnic_discrimination_survey.6.pdrx9_6 6 - Extremely stressful skos:closeMatch OMOP:36210124 Extremely bothersome semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_racial_ethnic_discrimination_survey radio pdrx9 2654 6 pdrx9_6 Answer 36210124 Meas Value LOINC Answer LA27766-7 S No open-source Yes +AIREADI_REDCAP:px_racial_ethnic_discrimination_survey.777.pdrx9_777 Prefer not to say skos:exactMatch OMOP:36311156 Prefer not to say semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_racial_ethnic_discrimination_survey radio pdrx9 2655 777 pdrx9_777 Answer 36311156 Meas Value LOINC Answer LA28803-7 S No open-source Yes AIREADI_REDCAP:px_racial_ethnic_discrimination_survey.1.pxrd10_1 Never skos:exactMatch OMOP:45876662 Never semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_racial_ethnic_discrimination_survey radio pxrd10 2656 1 pxrd10_1 Answer 45876662 Meas Value LOINC Answer LA6270-8 S No open-source Yes AIREADI_REDCAP:px_racial_ethnic_discrimination_survey.2.pxrd10_2 Once in a while skos:closeMatch OMOP:45879593 Occasionally semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_racial_ethnic_discrimination_survey radio pxrd10 2657 2 pxrd10_2 Answer 45879593 Meas Value LOINC Answer LA6483-7 S No open-source Yes AIREADI_REDCAP:px_racial_ethnic_discrimination_survey.3.pxrd10_3 Sometimes skos:exactMatch OMOP:45882528 Sometimes semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation px_racial_ethnic_discrimination_survey radio pxrd10 2658 3 pxrd10_3 Answer 45882528 Meas Value LOINC Answer LA10082-8 S No open-source Yes @@ -1370,8 +1369,8 @@ AIREADI_REDCAP:px_sdoh_combined_survey.pxdhc4 A doctor or nurse acts as if he or AIREADI_REDCAP:px_sdoh_combined_survey.pxdhc5 A doctor or nurse acts as if he or she is afraid of you. skos:closeMatch OMOP:40192423 How often does a doctor or nurse act as if he or she is afraid of you when you go to a doctor's office or other health care provider? semapv:ManualMappingCuration 0.75 AI-READI REDCap PPI AI-READI manual_curation px_sdoh_combined_survey radio 1300 pxdhc5 Question 40192423 Observation PPI Question sdoh_dms_5 S No open-source Yes AIREADI_REDCAP:px_sdoh_combined_survey.pxdhc6 A doctor or nurse acts as if he or she is better than you. skos:closeMatch OMOP:40192383 How often does a doctor or nurse act as if he or she is better than you when you go to a doctor's office or other health care provider? semapv:ManualMappingCuration 0.75 AI-READI REDCap PPI AI-READI manual_curation px_sdoh_combined_survey radio 1301 pxdhc6 Question 40192383 Observation PPI Question sdoh_dms_7 S No open-source Yes AIREADI_REDCAP:px_sdoh_combined_survey.pxdhc7 You feel like a doctor or nurse is not listening to what you were saying skos:closeMatch OMOP:40192394 How often do you feel like a doctor or nurse is not listening to what you were saying. when you go to a doctor's office or other health care provider? semapv:ManualMappingCuration 0.75 AI-READI REDCap PPI AI-READI manual_curation px_sdoh_combined_survey radio 1302 pxdhc7 Question 40192394 Observation PPI Question sdoh_dms_6 S No open-source Yes -AIREADI_REDCAP:px_sdoh_combined_survey.pxsdohstartts PhenX SDOH Survey Started Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation PhenX SDOH Survey Started Timestamp (from REDCap) px_sdoh_combined_survey text 1303 pxsdohstartts Question 2005200558 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200575 PhenX SDOH Survey -AIREADI_REDCAP:px_sdoh_combined_survey.pxsdohcmpts PhenX SDOH Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation PhenX SDOH Survey Completed Timestamp (from REDCap) px_sdoh_combined_survey text 1304 pxsdohcmpts Question 2005200559 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200575 PhenX SDOH Survey +AIREADI_REDCAP:px_sdoh_combined_survey.pxsdohstartts PhenX SDOH Survey Started Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation PhenX SDOH Survey Started Timestamp (from REDCap) px_sdoh_combined_survey text 1303 pxsdohstartts Question 2005200558 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200575 PhenX SDOH Survey +AIREADI_REDCAP:px_sdoh_combined_survey.pxsdohcmpts PhenX SDOH Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation PhenX SDOH Survey Completed Timestamp (from REDCap) px_sdoh_combined_survey text 1304 pxsdohcmpts Question 2005200559 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200575 PhenX SDOH Survey AIREADI_REDCAP:px_sdoh_combined_survey.px270201_metadata PhenX English Proficiency MetaData skos:exactMatch OMOP:2005200102 PhenX MetaData semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation PhenX English Proficiency MetaData px_sdoh_combined_survey text 1305 px270201_metadata Question 2005200102 2005200102 Observation AIREADI Survey S Yes open-source Yes 2005200576 PhenX English Proficiency Survey AIREADI_REDCAP:px_sdoh_combined_survey.px011002_metadata PhenX Education Attainment MetaData skos:exactMatch OMOP:2005200102 PhenX MetaData semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation PhenX Education Attainment MetaData px_sdoh_combined_survey text 1306 px011002_metadata Question 2005200102 2005200102 Observation AIREADI Survey S Yes open-source Yes 2005200577 PhenX Education Attainment Survey AIREADI_REDCAP:px_sdoh_combined_survey.px280301_metadata PhenX Job Security MetaData skos:exactMatch OMOP:2005200102 PhenX MetaData semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation PhenX Job Security MetaData px_sdoh_combined_survey text 1307 px280301_metadata Question 2005200102 2005200102 Observation AIREADI Survey S Yes open-source Yes 2005200578 PhenX Job Security Survey @@ -1600,9 +1599,9 @@ AIREADI_REDCAP:px_sdoh_combined_survey.777.pxdhc7_777 Prefer not to say skos:exa AIREADI_REDCAP:current_medications.5.cmroute_5 Nasal skos:exactMatch OMOP:4262914 Nasal semapv:ManualMappingCuration 1 AI-READI REDCap SNOMED AI-READI manual_curation current_medications dropdown cmroute 2997 5 cmroute_5 Answer 4262914 Route SNOMED Qualifier Value 46713006 S No protected Yes AIREADI_REDCAP:recruitment_survey.reccmpdat Recruitment survey date (date survey/form opened) skos:closeMatch OMOP:4160030 Performed semapv:ManualMappingCuration 0.75 AI-READI REDCap SNOMED AI-READI manual_curation recruitment_survey text 1025 reccmpdat Question 4160030 Observation SNOMED Qualifier Value 398166005 S No open-source Yes 2005200561 Recruitment Survey AIREADI_REDCAP:current_medications.6.cmroute_6 Oral skos:exactMatch OMOP:4132161 Oral semapv:ManualMappingCuration 1 AI-READI REDCap SNOMED AI-READI manual_curation current_medications dropdown cmroute 2998 6 cmroute_6 Answer 4132161 Route SNOMED Qualifier Value 26643006 S No protected Yes -AIREADI_REDCAP:recruitment_survey.recstartts Recruitment Survey Started Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Recruitment Survey Started Timestamp (from REDCap) recruitment_survey text 1029 recstartts Question 2005200558 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200561 Recruitment Survey +AIREADI_REDCAP:recruitment_survey.recstartts Recruitment Survey Started Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Recruitment Survey Started Timestamp (from REDCap) recruitment_survey text 1029 recstartts Question 2005200558 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200561 Recruitment Survey AIREADI_REDCAP:current_medications.7.cmroute_7 Rectal skos:exactMatch OMOP:4290759 Rectal semapv:ManualMappingCuration 1 AI-READI REDCap SNOMED AI-READI manual_curation current_medications dropdown cmroute 2999 7 cmroute_7 Answer 4290759 Route SNOMED Qualifier Value 37161004 S No protected Yes -AIREADI_REDCAP:recruitment_survey.reccmpts Recruitment Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Recruitment Survey Completed Timestamp (from REDCap) recruitment_survey text 1030 reccmpts Question 2005200559 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200561 Recruitment Survey +AIREADI_REDCAP:recruitment_survey.reccmpts Recruitment Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Recruitment Survey Completed Timestamp (from REDCap) recruitment_survey text 1030 reccmpts Question 2005200559 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200561 Recruitment Survey AIREADI_REDCAP:current_medications.8.cmroute_8 Inhalation skos:closeMatch OMOP:40486069 Respiratory tract semapv:ManualMappingCuration 1 AI-READI REDCap SNOMED AI-READI manual_curation current_medications dropdown cmroute 3000 8 cmroute_8 Answer 40486069 Route SNOMED Qualifier Value 447694001 S No protected Yes AIREADI_REDCAP:retinal_imaging_v2.rtop_odd OptoMed-Disc centered-CFP skos:exactMatch OMOP:2005200289 OptoMed-Disc centered-CFP semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI-Vision AI-READI manual_curation right eye|45876703 retinal_imaging_v2 yesno rtop_odd Question 2005200289 2005200289 Observation AIREADI-Vision Observable Entity S Yes open-source Yes 45876703 Right eye AIREADI_REDCAP:current_medications.9.cmroute_9 Subcutaneous skos:exactMatch OMOP:4142048 Subcutaneous semapv:ManualMappingCuration 1 AI-READI REDCap SNOMED AI-READI manual_curation current_medications dropdown cmroute 3001 9 cmroute_9 Answer 4142048 Route SNOMED Qualifier Value 34206005 S No protected Yes @@ -1779,8 +1778,8 @@ AIREADI_REDCAP:screening_survey.cmtrt_a1c Do you take pills to control your A1C AIREADI_REDCAP:screening_survey.cmtrt_insln Do you inject insulin to control your blood glucose levels? skos:exactMatch OMOP:2005200549 Do you inject insulin to control your blood glucose levels? semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation screening_survey yesno 1047 cmtrt_insln Question 2005200549 2005200549 Observation AIREADI Survey S Yes open-source Yes AIREADI_REDCAP:screening_survey.cmtrt_glcs Do you use other injections to control your blood glucose levels? Examples: Victoza, Ozempic, Symlin, Tanzeum, and Trulicity skos:exactMatch OMOP:2005200550 Do you use other injections to control your blood glucose levels? Examples: Victoza, Ozempic, Symlin, Tanzeum, and Trulicity semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation screening_survey yesno 1048 cmtrt_glcs Question 2005200550 2005200550 Observation AIREADI Survey S Yes open-source Yes AIREADI_REDCAP:screening_survey.cmtrt_lfst Do you use lifestyle changes to control your A1C and blood glucose levels? Examples: regular exercise, avoiding sugary foods and beverages, eating a balanced diet with lots of vegetables, sticking to a consistent eating schedule skos:exactMatch OMOP:2005200004 Do you use lifestyle changes to control your A1C and blood glucose levels? Examples: regular exercise, avoiding sugary foods and beverages, eating a balanced diet with lots of vegetables, sticking to a consistent eating schedule semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation screening_survey yesno 1049 cmtrt_lfst Question 2005200004 2005200004 Observation AIREADI Survey S Yes open-source Yes -AIREADI_REDCAP:screening_survey.scrstartts Screening Survey Started Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Screening Survey Started Timestamp (from REDCap) screening_survey text 1060 scrstartts Question 2005200558 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200563 Screening Survey -AIREADI_REDCAP:screening_survey.scrcmpts Screening Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Screening Survey Completed Timestamp (from REDCap) screening_survey text 1061 scrcmpts Question 2005200559 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200563 Screening Survey +AIREADI_REDCAP:screening_survey.scrstartts Screening Survey Started Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Screening Survey Started Timestamp (from REDCap) screening_survey text 1060 scrstartts Question 2005200558 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200563 Screening Survey +AIREADI_REDCAP:screening_survey.scrcmpts Screening Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Screening Survey Completed Timestamp (from REDCap) screening_survey text 1061 scrcmpts Question 2005200559 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200563 Screening Survey AIREADI_REDCAP:screening_survey.1.cmtrt_a1c_1 Yes skos:exactMatch OMOP:4016042 Diabetic on oral treatment semapv:ManualMappingCuration 1 AI-READI REDCap SNOMED AI-READI manual_curation screening_survey radio cmtrt_a1c 1790 1 cmtrt_a1c_1 Answer 4016042 Observation SNOMED Clinical Finding 170746002 S No open-source Yes AIREADI_REDCAP:screening_survey.0.cmtrt_a1c_0 No skos:exactMatch OMOP:45878245 No semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation screening_survey radio cmtrt_a1c 1791 0 cmtrt_a1c_0 Answer 45878245 Meas Value LOINC Answer LA32-8 S No open-source Yes AIREADI_REDCAP:screening_survey.1.mhterm_dm1_1 Yes skos:exactMatch OMOP:45877994 Yes semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation screening_survey yes mhterm_dm1 1 mhterm_dm1_1 Answer 45877994 Meas Value LOINC Answer LA33-6 S No open-source Yes @@ -1832,8 +1831,8 @@ AIREADI_REDCAP:substance_use_survey.sumrjcdur Do you use marijuana now? skos:exa AIREADI_REDCAP:substance_use_survey.sumrjtrt In what form do you usually use marijuana? (check all that apply) skos:exactMatch OMOP:2005200037 In what form do you usually use marijuana? (check all that apply) semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation substance_use_survey checkbox 1189 sumrjtrt Question 2005200037 2005200037 Observation AIREADI Survey S Yes open-source Yes AIREADI_REDCAP:substance_use_survey.sumrjceddur How many total years have you used marijuana? skos:exactMatch OMOP:2005200038 How many total years have you used marijuana? semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation substance_use_survey dropdown 1190 sumrjceddur Question 2005200038 2005200038 Observation AIREADI Survey S Yes open-source Yes AIREADI_REDCAP:substance_use_survey.sumrjfr When you used marijuana, approximately how many days in a typical week would you use it? skos:exactMatch OMOP:2005200039 When you used marijuana, approximately how many days in a typical week would you use it? semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation substance_use_survey dropdown 1191 sumrjfr Question 2005200039 2005200039 Observation AIREADI Survey S Yes open-source Yes -AIREADI_REDCAP:substance_use_survey.sustartts Substance Use Survey Started Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Substance Use Survey Started Timestamp (from REDCap) substance_use_survey text 1192 sustartts Question 2005200558 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200569 Substance Use Survey -AIREADI_REDCAP:substance_use_survey.sucmpts Substance Use Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Substance Use Survey Completed Timestamp (from REDCap) substance_use_survey text 1193 sucmpts Question 2005200559 Observation AIREADI Qualifier Value 118575009 S Yes open-source Yes 2005200569 Substance Use Survey +AIREADI_REDCAP:substance_use_survey.sustartts Substance Use Survey Started Timestamp (from REDCap) skos:closeMatch OMOP:2005200558 Survey Started Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Substance Use Survey Started Timestamp (from REDCap) substance_use_survey text 1192 sustartts Question 2005200558 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200569 Substance Use Survey +AIREADI_REDCAP:substance_use_survey.sucmpts Substance Use Survey Completed Timestamp (from REDCap) skos:closeMatch OMOP:2005200559 Survey Completed Timestamp semapv:ManualMappingCuration 0.75 AI-READI REDCap AIREADI AI-READI manual_curation Substance Use Survey Completed Timestamp (from REDCap) substance_use_survey text 1193 sucmpts Question 2005200559 Observation AIREADI Qualifier Value S Yes open-source Yes 2005200569 Substance Use Survey AIREADI_REDCAP:substance_use_survey.1.susmkncf_1 Yes skos:exactMatch OMOP:40766306 Smoked at least 100 cigarettes in entire life semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation substance_use_survey radio susmkncf 1999 1 susmkncf_1 Answer 40766306 Observation LOINC Clinical Observation 63581-3 S No open-source Yes AIREADI_REDCAP:substance_use_survey.0.susmkncf_0 No skos:exactMatch OMOP:45878245 No semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation substance_use_survey radio susmkncf 2000 0 susmkncf_0 Answer 45878245 Meas Value LOINC Answer LA32-8 S No open-source Yes AIREADI_REDCAP:substance_use_survey.777.susmkncf_777 Prefer not to say skos:exactMatch OMOP:36311156 Prefer not to say semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation substance_use_survey radio susmkncf 2001 777 susmkncf_777 Answer 36311156 Meas Value LOINC Answer LA28803-7 S No open-source Yes @@ -1845,7 +1844,7 @@ AIREADI_REDCAP:substance_use_survey.777.susmkcdur_777 Prefer not to say skos:exa AIREADI_REDCAP:substance_use_survey.98.susmkstoage_98 More than 60 years old skos:exactMatch OMOP:45882614 60 or older semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation substance_use_survey dropdown susmkstoage 2007 98 susmkstoage_98 Answer 45882614 Meas Value LOINC Answer LA16058-2 S No open-source Yes AIREADI_REDCAP:substance_use_survey.999.susmkstoage_999 Prefer not to say skos:exactMatch OMOP:36311156 Prefer not to say semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation substance_use_survey dropdown susmkstoage 2008 999 susmkstoage_999 Answer 36311156 Meas Value LOINC Answer LA28803-7 S No open-source Yes AIREADI_REDCAP:substance_use_survey.21.susmkdosfr_21 21-30 (up to 1.5 packs) skos:closeMatch OMOP:45881687 21-30 (2 points) semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation substance_use_survey dropdown susmkdosfr 2009 21 susmkdosfr_21 Answer 45881687 Meas Value LOINC Answer LA15914-7 S No open-source Yes -AIREADI_REDCAP:substance_use_survey.31.susmkdosfr_31 31-40 (up to 2 packs) skos:closeMatch OMOP:45884478 31 or more (3 points) semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation substance_use_survey dropdown susmkdosfr 2010 31 susmkdosfr_31 Answer 45884478 Meas Value LOINC Answer LA15915-4 S No open-source Yes +AIREADI_REDCAP:substance_use_survey.31.susmkdosfr_31 31-40 (up to 2 packs) skos:exactMatch OMOP:2005200636 31-40 (up to 2 packs) semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation substance_use_survey dropdown susmkdosfr 2010 31 susmkdosfr_31 Answer 2005200636 2005200636 Meas Value AIREADI Answer S Yes open-source Yes AIREADI_REDCAP:substance_use_survey.41.susmkdosfr_41 41-50 (up to 2.5 packs) skos:exactMatch OMOP:2005200194 41-50 (up to 2.5 packs) semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation substance_use_survey dropdown susmkdosfr 2011 41 susmkdosfr_41 Answer 2005200194 2005200194 Meas Value AIREADI Answer S Yes open-source Yes AIREADI_REDCAP:substance_use_survey.51.susmkdosfr_51 More than 50 (3 or more packs) skos:exactMatch OMOP:2005200195 More than 50 (3 or more packs) semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation substance_use_survey dropdown susmkdosfr 2012 51 susmkdosfr_51 Answer 2005200195 2005200195 Meas Value AIREADI Answer S Yes open-source Yes AIREADI_REDCAP:substance_use_survey.999.susmkdosfr_999 Prefer not to say skos:exactMatch OMOP:36311156 Prefer not to say semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation substance_use_survey dropdown susmkdosfr 2013 999 susmkdosfr_999 Answer 36311156 Meas Value LOINC Answer LA28803-7 S No open-source Yes diff --git a/redCapDataDictionaryWithExtension/sssom/ai_readi_redcap_value_set_mapping_sssom_README.md b/redCapDataDictionaryWithExtension/sssom/ai_readi_redcap_value_set_mapping_sssom_README.md index a8d5194..2a76012 100644 --- a/redCapDataDictionaryWithExtension/sssom/ai_readi_redcap_value_set_mapping_sssom_README.md +++ b/redCapDataDictionaryWithExtension/sssom/ai_readi_redcap_value_set_mapping_sssom_README.md @@ -11,8 +11,8 @@ Generated from `_ai_readi_redcap_value_set_mapping_common.csv` with `generate_li ## Row counts - Source rows: 2,076 -- Rows included in SSSOM TSV: 2,001 -- Rows excluded as incomplete for SSSOM: 75 +- Rows included in SSSOM TSV: 2,000 +- Rows excluded as incomplete for SSSOM: 76 ## Identifier conventions diff --git a/redCapDataDictionaryWithExtension/sssom/ai_readi_redcap_value_set_mapping_sssom_incomplete_rows.csv b/redCapDataDictionaryWithExtension/sssom/ai_readi_redcap_value_set_mapping_sssom_incomplete_rows.csv index c1fa71d..0bb89c8 100644 --- a/redCapDataDictionaryWithExtension/sssom/ai_readi_redcap_value_set_mapping_sssom_incomplete_rows.csv +++ b/redCapDataDictionaryWithExtension/sssom/ai_readi_redcap_value_set_mapping_sssom_incomplete_rows.csv @@ -12,6 +12,7 @@ Yes,Yes,open-source,No,bcva,radio,viaossph_m,,Answer,1,viaossph_m_1,+ (positive) Yes,Yes,open-source,No,bcva,radio,viaossph_m,,Answer,0,viaossph_m_0,- (negative) modifier for viaossph,,,,,,,,,,,,,, Yes,Yes,open-source,No,demographics_survey,text,,1111,Question,brthyy,,Year (e.g. 1967),0,,No matching concept,,,,,,,,,,, Yes,Yes,open-source,,device_return,checkbox,send_satisfaction_survey,,Answer,1,send_satisfaction_survey_1,Checking the box and saving the form schedules a survey invitation to be sent to the participant in 1 hour,,,,,,,,,,,,,, +Yes,Yes,protected,No,current_medications,dropdown,,1471,Question,cmroute,,"How is it taken? (ex. oral, cream, injection, etc.)",0,,,,,,,,,,No matching concept; answers populate DRUG_EXPOSURE.route_concept_id,,, Yes,Yes,open-source,No,imported,text,import_collection_dt_edta,2911,Question,,,EDTA Plasma,,,EDTA Plasma - Date Collection,,,,,,,,,,, Yes,Yes,open-source,No,imported,text,import_process_dt_edta,2912,Question,,,EDTA Plasma,,,EDTA Plasma - Date Processed,,,,,,,,,,, Yes,Yes,open-source,No,imported,notes,import_notes_edta,2913,Question,,,EDTA Plasma,,,EDTA Plasma Notes,,,,,,,,,,, diff --git a/redCapDataDictionaryWithExtension/value-set-mapping-common/_ai_readi_redcap_value_set_mapping_common.csv b/redCapDataDictionaryWithExtension/value-set-mapping-common/_ai_readi_redcap_value_set_mapping_common.csv index 4b5ff47..f1857c2 100644 --- a/redCapDataDictionaryWithExtension/value-set-mapping-common/_ai_readi_redcap_value_set_mapping_common.csv +++ b/redCapDataDictionaryWithExtension/value-set-mapping-common/_ai_readi_redcap_value_set_mapping_common.csv @@ -17,12 +17,12 @@ Yes,Yes,open-source,Yes,bcva,calc,,1510,Question,viaospscore,,Photopic LogMAR OS Yes,No,open-source,Yes,bcva,text,,1511,Question,viaodmsf,,Snellen fraction - Mesopic VA - OD,2005200054,2005200054,Snellen fraction - Mesopic VA - OD,Measurement,AIREADI-Vision,Clinical Observation,,S,skos:exactMatch,1,Snellen fraction - Mesopic VA - OD,,45876703,Right eye Yes,No,open-source,Yes,bcva,text,,1512,Question,viaosmsf,,Snellen fraction - Mesopic VA - OS,2005200055,2005200055,Snellen fraction - Mesopic VA - OS,Measurement,AIREADI-Vision,Clinical Observation,,S,skos:exactMatch,1,Snellen fraction - Mesopic VA - OS,,45883829,Left eye Yes,Yes,protected,No,screening_survey,radio,,1050,Question,scrsex,,"What sex were you assigned at birth? That is, what is on your original birth certificate?",46235213,,Sex assigned at birth,Observation,LOINC,Clinical Observation,76689-9,S,skos:closeMatch,1,,,, -Yes,Yes,protected,No,screening_survey,text,,1051,Question,scrsexot,,Other (please specify),46235213,,Sex assigned at birth,Observation,LOINC,Clinical Observation,76689-9,S,skos:exactMatch,1,,,, +Yes,Yes,protected,No,screening_survey,text,,1051,Question,scrsexot,,Other (please specify),46235213,,Sex assigned at birth,Observation,LOINC,Clinical Observation,76689-9,S,skos:closeMatch,0.75,,,, Yes,Yes,protected,No,screening_survey,checkbox,,1052,Question,ethnic,,"Are you of Hispanic, Latina/x or Spanish origin? Please check all that apply.",42868351,,"Hispanic, latino-a, or spanish origin",Observation,LOINC,Clinical Observation,69854-8,S,skos:exactMatch,1,,,, -Yes,Yes,protected,No,screening_survey,text,,1053,Question,ethnicot,,Other (please specify),42868351,,"Hispanic, latino-a, or spanish origin",Observation,LOINC,Clinical Observation,69854-8,S,skos:exactMatch,1,,,, +Yes,Yes,protected,No,screening_survey,text,,1053,Question,ethnicot,,Other (please specify),42868351,,"Hispanic, latino-a, or spanish origin",Observation,LOINC,Clinical Observation,69854-8,S,skos:closeMatch,0.75,,,, Yes,Yes,protected,No,screening_survey,calc,,1054,Question,ethnicscore,,Hispanic score (needed for demographics screening logic),0,,No matching concept,,,,,,,,,,, Yes,Yes,protected,No,screening_survey,checkbox,,1055,Question,race,,How would you describe your race/ethnicity? (check all that apply),3050381,,Race or ethnicity,Observation,LOINC,Clinical Observation,46463-6,S,skos:closeMatch,1,,,, -Yes,Yes,protected,No,screening_survey,text,,1056,Question,raceot,,Other (please describe),3050381,,Race or ethnicity,Observation,LOINC,Clinical Observation,46463-6,S,skos:closeMatch,1,,,, +Yes,Yes,protected,No,screening_survey,text,,1056,Question,raceot,,Other (please describe),3050381,,Race or ethnicity,Observation,LOINC,Clinical Observation,46463-6,S,skos:closeMatch,0.75,,,, Yes,Yes,protected,No,screening_survey,text,,1057,Question,racetrib,,Tribal affiliation (please describe),36660477,,Tribal affiliation,Observation,LOINC,Clinical Observation,95370-3,S,skos:closeMatch,1,,,, Yes,Yes,protected,No,screening_survey,radio,,1058,Question,race2,,Which one of these groups would you say best represents your race?,3046853,,Race,Observation,LOINC,Clinical Observation,32624-9,S,skos:closeMatch,1,,,, Yes,Yes,protected,Yes,screening_survey,text,,1059,Question,ancestry,,"What is your ancestry or ethnic origin?(Examples: Italian, Jamaican, African American, Cambodian, Cape Verdean, Cherokee, Navajo, Nez Pearce, Norwegian, Dominican, French Canadian, Haitian, Korean, Lebanese, Polish, Nigerian, Mexican, Taiwanese, Ukrainian, and so on.)",2005200557,2005200557,"What is your ancestry or ethnic origin?(Examples: Italian, Jamaican, African American, Cambodian, Cape Verdean, Cherokee, Navajo, Nez Pearce, Norwegian, Dominican, French Canadian, Haitian, Korean, Lebanese, Polish, Nigerian, Mexican, Taiwanese, Ukrainian, and so on.)",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, @@ -55,9 +55,9 @@ Yes,Yes,open-source,No,cesd10_survey,radio,,1204,Question,ces8,,I was happy,1761 Yes,Yes,open-source,No,cesd10_survey,radio,,1205,Question,ces9,,I felt lonely,1761319,,Feeling lonely,Observation,LOINC,Survey,100780-6,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,cesd10_survey,radio,,1206,Question,ces10,,"I could not ""get going""",1761073,,Lack of energy,Observation,LOINC,Survey,100786-3,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,cesd10_survey,calc,,1207,Question,cestl,,CESD-10 Score,1761347,,Total Score CES-D,Observation,LOINC,Survey,100787-1,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,cesd10_survey,text,,1208,Question,cesstartts,,CES-D-10 Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,CES-D-10 Survey Started Timestamp (from REDCap),,2005200570,CES-D-10 Survey +Yes,Yes,open-source,Yes,cesd10_survey,text,,1208,Question,cesstartts,,CES-D-10 Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,CES-D-10 Survey Started Timestamp (from REDCap),,2005200570,CES-D-10 Survey Yes,Yes,protected,Yes,health_survey,text,,1132,Question,mhcat_dmtaot,,Other (please specify):,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,2005200451,,2005200451,Other types of Dementia or Alzheimer's Disease -Yes,Yes,open-source,Yes,cesd10_survey,text,,1209,Question,cescmpts,,CES-D-10 Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,CES-D-10 Survey Completed Timestamp (from REDCap),,2005200570,CES-D-10 Survey +Yes,Yes,open-source,Yes,cesd10_survey,text,,1209,Question,cescmpts,,CES-D-10 Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,CES-D-10 Survey Completed Timestamp (from REDCap),,2005200570,CES-D-10 Survey Yes,Yes,open-source,Yes,cesd10_survey,radio,ces1,2078,Answer,0,ces1_0,Rarely or none of the time (< 1 day),2005200141,2005200141,Rarely or none of the time (< 1 day),Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,cesd10_survey,radio,ces1,2079,Answer,1,ces1_1,Some or a little of the time (1-2 days),2005200142,2005200142,Some or a little of the time (1-2 days),Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,protected,Yes,health_survey,text,,1136,Question,mhoccur_cnsot,,"If yes, please specify:",2005200455,2005200455,Neurocognitive disorder please specify,Observation,AIREADI,Survey,,S,skos:exactMatch,1,36309562,,36309562,Other neurological conditions @@ -103,14 +103,14 @@ Yes,Yes,open-source,Yes,cesd10_survey,radio,ces10,2117,Answer,3,ces10_3,All of t Yes,Yes,open-source,No,consent_survey,text,,1071,Question,icf_dat,,Consent survey/form date (date survey/form opened),4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,Consent survey/form date (date survey/form opened),,2005200565,Consent Survey Yes,Yes,open-source,No,consent_survey,checkbox,,1074,Question,c184390,,Paper consent obtained,3018196,,Informed consent obtained,Observation,LOINC,Clinical Observation,19826-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,consent_survey,text,,1075,Question,c184390_dat,,Date paper consent completed,4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,Date paper consent completed,,2005200587,Paper Consent Completed -Yes,Yes,open-source,Yes,consent_survey,text,,1081,Question,icfsvyts,,Consent Survey Start Timestamp,2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Consent Survey Start Timestamp,,2005200565,Consent Survey -Yes,Yes,open-source,Yes,consent_survey,text,,1082,Question,icfcmpts,,Consent Survey Completed Timestamp,2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Consent Survey Completed Timestamp,,2005200565,Consent Survey +Yes,Yes,open-source,Yes,consent_survey,text,,1081,Question,icfsvyts,,Consent Survey Start Timestamp,2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Consent Survey Start Timestamp,,2005200565,Consent Survey +Yes,Yes,open-source,Yes,consent_survey,text,,1082,Question,icfcmpts,,Consent Survey Completed Timestamp,2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Consent Survey Completed Timestamp,,2005200565,Consent Survey Yes,Yes,open-source,No,demographics_survey,text,,1106,Question,dmgcmpdat,,Demographic survey date (date survey/form opened),4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,Demographic survey date (date survey/form opened),,2005200567,Demographic Survey Yes,Yes,open-source,No,demographics_survey,text,,1111,Question,brthyy,,Year (e.g. 1967),0,,No matching concept,,,,,,,,,,, Yes,Yes,open-source,No,demographics_survey,text,,1112,Question,cage,,Age (in years),3022304,,Age,Observation,LOINC,Clinical Observation,30525-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,demographics_survey,radio,,1113,Question,cl_maristat,,Marital Status,4053609,,Marital status,Observation,SNOMED,Observable Entity,125680007,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,demographics_survey,text,,1117,Question,dmgstartts,,Demographics Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Demographics Survey Started Timestamp (from REDCap),,2005200567,Demographic Survey -Yes,Yes,open-source,Yes,demographics_survey,text,,1118,Question,dmgcmpts,,Demograhics Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Demograhics Survey Completed Timestamp (from REDCap),,2005200567,Demographic Survey +Yes,Yes,open-source,Yes,demographics_survey,text,,1117,Question,dmgstartts,,Demographics Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Demographics Survey Started Timestamp (from REDCap),,2005200567,Demographic Survey +Yes,Yes,open-source,Yes,demographics_survey,text,,1118,Question,dmgcmpts,,Demograhics Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Demograhics Survey Completed Timestamp (from REDCap),,2005200567,Demographic Survey Yes,Yes,open-source,No,demographics_survey,radio,cl_maristat,1881,Answer,C51773,cl_maristat_C51773,Married,45876756,,Married,Meas Value,LOINC,Answer,LA48-4,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,demographics_survey,radio,cl_maristat,1882,Answer,C51774,cl_maristat_C51774,Single,45879879,,Single,Meas Value,LOINC,Answer,LA17717-2,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,demographics_survey,radio,cl_maristat,1883,Answer,C51776,cl_maristat_C51776,Divorced,45883375,,Divorced,Meas Value,LOINC,Answer,LA51-8,S,skos:exactMatch,1,,,, @@ -149,8 +149,8 @@ Yes,Yes,open-source,No,diabetes_survey,radio,,1230,Question,dmlfrveg,,"In a typi Yes,Yes,open-source,Yes,diabetes_survey,radio,,1231,Question,dmledu,,"How often would you say that you engage in diabetes health education? (Examples: consulting with a dietician, attending support groups, reading books on diabetes, using diabetes-focused websites, watching TV shows on health, or using health-focused apps on your phone or tablet)",2005200307,2005200307,"How often would you say that you engage in diabetes health education? (Examples: consulting with a dietician, attending support groups, reading books on diabetes, using diabetes-focused websites, watching TV shows on health, or using health-focused apps on your phone or tablet)",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,diabetes_survey,radio,,1232,Question,dmlfeet,,How often do you inspect your feet?,2005200308,2005200308,How often do you inspect your feet?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,diabetes_survey,radio,,1233,Question,dmlmd,,Which of the following options best describes you with respect to physician care and medications?,2005200309,2005200309,Which of the following options best describes you with respect to physician care and medications?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,diabetes_survey,text,,1234,Question,dmlstartts,,Diabetes Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Diabetes Survey Started Timestamp (from REDCap),,2005200572,Diabetes Survey -Yes,Yes,open-source,Yes,diabetes_survey,text,,1235,Question,dmlcmpts,,Diabetes Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Diabetes Survey Completed Timestamp (from REDCap),,2005200572,Diabetes Survey +Yes,Yes,open-source,Yes,diabetes_survey,text,,1234,Question,dmlstartts,,Diabetes Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Diabetes Survey Started Timestamp (from REDCap),,2005200572,Diabetes Survey +Yes,Yes,open-source,Yes,diabetes_survey,text,,1235,Question,dmlcmpts,,Diabetes Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Diabetes Survey Completed Timestamp (from REDCap),,2005200572,Diabetes Survey Yes,Yes,open-source,Yes,diabetes_survey,radio,dmlvex,2143,Answer,10,dmlvex_10,At least 30 minutes daily 3 or more days a week,2005200312,2005200312,At least 30 minutes daily 3 or more days a week,Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,diabetes_survey,radio,dmlvex,2144,Answer,5,dmlvex_5,Less than 30 minutes daily less than 3 days a week,2005200313,2005200313,Less than 30 minutes daily less than 3 days a week,Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,diabetes_survey,radio,dmlvex,2145,Answer,0,dmlvex_0,Rarely or none,45883771,,Rarely or never,Meas Value,LOINC,Answer,LA15665-5,S,skos:exactMatch,1,,,, @@ -204,8 +204,8 @@ Yes,Yes,open-source,Yes,dietary_survey,radio,,1245,Question,diet7,,How many time Yes,Yes,open-source,Yes,dietary_survey,radio,,1246,Question,diet8,,"How much margarine, butter, or meat fat do you use to season vegetables or put on potatoes, bread or corn?",2005200062,2005200062,"How much margarine, butter, or meat fat do you use to season vegetables or put on potatoes, bread or corn?",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,dietary_survey,radio,,1247,Question,diet9,,How many servings of fruit juice did you drink each day?,2005200063,2005200063,How many servings of fruit juice did you drink each day?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,dietary_survey,calc,,1248,Question,dietscore,,Diet score,2005200064,2005200064,Diet score,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,dietary_survey,text,,1249,Question,dietstartts,,Dietary Survey Start Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Dietary Survey Start Timestamp (from REDCap),,2005200573,Dietary Survey -Yes,Yes,open-source,Yes,dietary_survey,text,,1250,Question,dietcmpts,,Dietary Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Dietary Survey Completed Timestamp (from REDCap),,2005200573,Dietary Survey +Yes,Yes,open-source,Yes,dietary_survey,text,,1249,Question,dietstartts,,Dietary Survey Start Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Dietary Survey Start Timestamp (from REDCap),,2005200573,Dietary Survey +Yes,Yes,open-source,Yes,dietary_survey,text,,1250,Question,dietcmpts,,Dietary Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Dietary Survey Completed Timestamp (from REDCap),,2005200573,Dietary Survey Yes,Yes,open-source,Yes,dietary_survey,radio,diet1,2183,Answer,0,diet1_0,Less than 1 time,2005200238,2005200238,Less than 1 time,Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,dietary_survey,radio,diet1,2184,Answer,1,diet1_1,1 to 3 times a week,45876668,,1 to 3 times a week,Meas Value,LOINC,Answer,LA13830-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,dietary_survey,radio,diet1,2185,Answer,2,diet1_2,4 or more times,46238128,,4 or more times,Meas Value,LOINC,Answer,LA23713-3,S,skos:exactMatch,1,,,, @@ -285,12 +285,12 @@ Yes,Yes,open-source,No,ecg,text,,1649,Question,rtfliocmpdattim,,Date & time FLIO Yes,Yes,open-source,No,ecg,text,,1653,Question,rtaccmpdattim,,Date & time Angioplex - Cirrus 5000 performed,4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,Date & time Angioplex - Cirrus 5000 performed,,2005200601,Angioplex - Cirrus 5000 Yes,Yes,open-source,No,ecg,text,,1657,Question,rtekgcmpdattim,,Date & time Cardiology - EKG - Pagewriter TC30 Cardiograp performed,4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,Date & time Cardiology - EKG - Pagewriter TC30 Cardiograp performed,,2005200602,Cardiology - EKG - Pagewriter TC30 Cardiograp Yes,Yes,open-source,No,faq_survey,text,,1031,Question,faqcmpdat,,FAQ Survey date (date survey/form opened),4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,FAQ survey date (date survey/form opened),,2005200562,FAQ Survey -Yes,Yes,open-source,Yes,faq_survey,text,,1035,Question,faqstartts,,FAQ Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,FAQ Survey Started Timestamp (from REDCap),,2005200562,FAQ Survey -Yes,Yes,open-source,Yes,faq_survey,text,,1036,Question,faqcmpts,,FAQ Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,FAQ Survey Completed Timestamp (from REDCap),,2005200562,FAQ Survey +Yes,Yes,open-source,Yes,faq_survey,text,,1035,Question,faqstartts,,FAQ Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,FAQ Survey Started Timestamp (from REDCap),,2005200562,FAQ Survey +Yes,Yes,open-source,Yes,faq_survey,text,,1036,Question,faqcmpts,,FAQ Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,FAQ Survey Completed Timestamp (from REDCap),,2005200562,FAQ Survey Yes,Yes,open-source,No,health_survey,text,,1119,Question,mhcmpdat,,Health survey date,4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,Health survey date,,2005200568,Health Survey Yes,Yes,open-source,Yes,health_survey,radio,,1122,Question,mhoccur_mi,,Heart attack,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4329847,,4329847,Myocardial infarction Yes,Yes,open-source,Yes,health_survey,radio,,1123,Question,mhoccur_cvdot,,"Other heart issues (Examples: pacemaker, heart valve disease, open heart surgery)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,2005200627,,2005200627,"Other heart issues (Examples: pacemaker, heart valve disease, open heart surgery)" -Yes,Yes,open-source,Yes,health_survey,radio,,1124,Question,mhoccur_strk,,Stroke,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,2005200628,,2005200628,Stroke +Yes,Yes,open-source,Yes,health_survey,radio,,1124,Question,mhoccur_strk,,Stroke,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,381316,,381316,Cerebrovascular accident Yes,Yes,open-source,Yes,health_survey,radio,,1125,Question,mhoccur_circ,,"Circulation problems (Examples: arteriosclerosis, atherosclerosis, blood clots in lungs or leg veins)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,2005200015,,2005200015,Circulation problems Yes,Yes,open-source,Yes,health_survey,radio,,1126,Question,mhoccur_clsh,,High blood cholesterol,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4029305,,4029305,Hypercholesterolemia Yes,Yes,open-source,Yes,health_survey,radio,,1127,Question,mhoccur_hbp,,High blood pressure,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,316866,,316866,Hypertensive Disorder @@ -307,7 +307,7 @@ Yes,Yes,open-source,Yes,health_survey,radio,,1139,Question,mhoccur_ca,,Cancer (a Yes,Yes,open-source,Yes,health_survey,radio,,1141,Question,mhoccur_plm,,"Chronic pulmonary (lung) problems (Examples: emphysema, asthma, tuberculosis, asbestosis)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4186898,,4186898,Chronic lung disease Yes,Yes,open-source,Yes,health_survey,radio,,1142,Question,mhoccur_gi,,"Digestive problems (Examples: stomach ulcer, gastrointestinal problems, hiatal hernia)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4201745,,4201745,Disorder of digestive system Yes,Yes,open-source,Yes,health_survey,radio,,1143,Question,mhoccur_ua,,"Urinary problems (Examples: urinary tract infections, incontinence, prostate problems)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,75865,,75865,Disorder of urinary system -Yes,Yes,open-source,Yes,health_survey,radio,,1144,Question,mhoccur_rnl,,Kidney problems,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,2005200017,,2005200017,Kidney problems +Yes,Yes,open-source,Yes,health_survey,radio,,1144,Question,mhoccur_rnl,,Kidney problems,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,198124,,198124,Kidney disease Yes,Yes,open-source,Yes,health_survey,radio,,1145,Question,mhoccur_ear,,Hearing impairment,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,377889,,377889,Hearing loss Yes,Yes,open-source,Yes,health_survey,radio,,1146,Question,mhoccur_obs,,Obesity,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,433736,,433736,Obesity Yes,Yes,open-source,Yes,health_survey,radio,,1147,Question,fh_dm2pt,,Were either of your parents diagnosed with Type II Diabetes?,2005200018,2005200018,Were either of your parents diagnosed with Type II Diabetes?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, @@ -323,12 +323,12 @@ Yes,Yes,open-source,Yes,health_survey,radio,,1156,Question,mhoccur_ded,,Dry eye Yes,Yes,open-source,Yes,health_survey,radio,,1157,Question,mhoccur_yn,,"Have you been diagnosed with any conditions not listed above? (any condition, not just eyes)",2005200470,2005200470,"Have you been diagnosed with any conditions not listed above? (any condition, not just eyes)",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,,1159,Question,mhoccur_fall,,Have you fallen in the last 12 months? (a fall is defined as an event which results in a person coming to rest inadvertently on the ground or floor or other lower level),40757198,,Falls in the past year,Observation,LOINC,Survey,52552-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,health_survey,text,,1160,Question,mhoccur_fallot,,"If so, how many times in the last 12 months?",4310026,,Number of falls in last year,Observation,SNOMED,Observable Entity,391002003,S,skos:closeMatch,1,,,, -Yes,Yes,open-source,Yes,health_survey,text,,1161,Question,mhstartts,,Health Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Health Survey Started Timestamp (from REDCap),,2005200568,Health Survey -Yes,Yes,open-source,Yes,health_survey,text,,1162,Question,mhcmpts,,Heath Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Heath Survey Completed Timestamp (from REDCap),,2005200568,Health Survey +Yes,Yes,open-source,Yes,health_survey,text,,1161,Question,mhstartts,,Health Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Health Survey Started Timestamp (from REDCap),,2005200568,Health Survey +Yes,Yes,open-source,Yes,health_survey,text,,1162,Question,mhcmpts,,Heath Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Heath Survey Completed Timestamp (from REDCap),,2005200568,Health Survey Yes,Yes,open-source,No,health_survey,radio,mhoccur_mi,1894,Answer,1,mhoccur_mi_1,Yes,4329847,,Myocardial infarction,Condition,SNOMED,Disorder,22298006,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_mi,1895,Answer,0,mhoccur_mi_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,protected,Yes,current_medications,text,,1470,Question,cmname,,Medication Name,2005200481,2005200481,Medication Name,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, -Yes,Yes,protected,No,current_medications,dropdown,,1471,Question,cmroute,,"How is it taken? (ex. oral, cream, injection, etc.)",44786711,,Dose form - RxNorm RXCUI of Medication,Measurement,LOINC,Clinical Observation,74054-8,S,skos:closeMatch,0.75,,,, +Yes,Yes,protected,No,current_medications,dropdown,,1471,Question,cmroute,,"How is it taken? (ex. oral, cream, injection, etc.)",0,,,,,,,,,,No matching concept; answers populate DRUG_EXPOSURE.route_concept_id,,, Yes,Yes,protected,No,current_medications,text,,1473,Question,cmdos,,Amount taken (Dose),4162374,,Drug dose,Observation,SNOMED,Clinical Finding,398232005,S,skos:closeMatch,1,,,, Yes,Yes,protected,Yes,current_medications,dropdown,,1474,Question,cmdosu,,"Unit (Record the dose unit of the dose of concomitant medication/treatment/therapy taken (e.g., mg.)).",2005200221,2005200221,"Unit (Record the dose unit of the dose of concomitant medication/treatment/therapy taken (e.g., mg.)).",Observation,AIREADI,Clinical Observation,,S,skos:exactMatch,1,,,, Yes,Yes,protected,No,current_medications,dropdown,,1475,Question,cmdosfrq,,Frequency taken or applied:,3042548,,"Current medication, Frequency",Observation,LOINC,Claims Attachment,52810-9,S,skos:closeMatch,1,,,, @@ -337,7 +337,7 @@ Yes,Yes,open-source,No,health_survey,radio,mhoccur_mi,1896,Answer,777,mhoccur_mi Yes,Yes,open-source,Yes,health_survey,radio,mhoccur_cvdot,1897,Answer,1,mhoccur_cvdot_1,Yes,2005200627,2005200627,"Other heart issues (Examples: pacemaker, heart valve disease, open heart surgery)",Condition,AIREADI,Disorder,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_cvdot,1898,Answer,0,mhoccur_cvdot_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_cvdot,1899,Answer,777,mhoccur_cvdot_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,health_survey,radio,mhoccur_strk,1900,Answer,1,mhoccur_strk_1,Yes,2005200628,2005200628,Stroke,Condition,AIREADI,Disorder,,S,skos:exactMatch,1,,,, +Yes,Yes,open-source,No,health_survey,radio,mhoccur_strk,1900,Answer,1,mhoccur_strk_1,Yes,381316,,Cerebrovascular accident,Condition,SNOMED,Disorder,230690007,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_strk,1901,Answer,0,mhoccur_strk_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_strk,1902,Answer,777,mhoccur_strk_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,health_survey,radio,mhoccur_circ,1903,Answer,1,mhoccur_circ_1,Yes,2005200015,2005200015,"Circulation problems (Examples: arteriosclerosis, atherosclerosis, blood clots in lungs or leg veins)",Condition,AIREADI,Disorder,,S,skos:exactMatch,1,,,, @@ -389,7 +389,7 @@ Yes,Yes,open-source,No,health_survey,radio,mhoccur_gi,1948,Answer,777,mhoccur_gi Yes,Yes,open-source,No,health_survey,radio,mhoccur_ua,1949,Answer,1,mhoccur_ua_1,Yes,75865,,Disorder of urinary system,Condition,SNOMED,Disorder,128606002,S,skos:closeMatch,0.75,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_ua,1950,Answer,0,mhoccur_ua_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_ua,1951,Answer,777,mhoccur_ua_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,health_survey,radio,mhoccur_rnl,1952,Answer,1,mhoccur_rnl_1,Yes,2005200017,2005200017,Kidney problems,Condition,AIREADI,Disorder,,S,skos:exactMatch,1,,,, +Yes,Yes,open-source,No,health_survey,radio,mhoccur_rnl,1952,Answer,1,mhoccur_rnl_1,Yes,198124,,Kidney disease,Condition,SNOMED,Disorder,90708001,S,skos:closeMatch,0.75,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_rnl,1953,Answer,0,mhoccur_rnl_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_rnl,1954,Answer,777,mhoccur_rnl_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_ear,1955,Answer,1,mhoccur_ear_1,Yes,377889,,Hearing loss,Condition,SNOMED,Disorder,15188001,S,skos:exactMatch,1,,,, @@ -687,42 +687,42 @@ Yes,Yes,open-source,Yes,meds_assessment,radio,,1465,Question,cm_dcg,,"Have you t Yes,Yes,open-source,Yes,meds_assessment,radio,,1466,Question,cm_slp,,Have you taken sleeping pills in the past 2 weeks?,2005200150,2005200150,Have you taken sleeping pills in the past 2 weeks?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_asp,2949,Answer,0,cm_asp_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_asp,2950,Answer,1,cm_asp_1,Every day,45881677,,Every day,Meas Value,LOINC,Answer,LA14799-3,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,meds_assessment,radio,cm_asp,2951,Answer,2,cm_asp_2,A few days (<1 day/week),45884557,,Less than a day,Meas Value,LOINC,Answer,LA14482-6,S,skos:closeMatch,0.75,,,, +Yes,Yes,open-source,No,meds_assessment,radio,cm_asp,2951,Answer,2,cm_asp_2,A few days (<1 day/week),36210209,,Less than once a week,Meas Value,LOINC,Answer,LA27722-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_asp,2952,Answer,3,cm_asp_3,Some days (1-2 days/week),1620467,,A few days (1-2 days),Meas Value,LOINC,Answer,LA31669-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_asp,2953,Answer,4,cm_asp_4,Most days (3-4 days/week),1620862,,Most days (3-4 days),Meas Value,LOINC,Answer,LA31670-5,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_asp,2954,Answer,99,cm_asp_99,Don't know/not sure,45876636,,Don't know,Meas Value,LOINC,Answer,LA12688-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_asp,2955,Answer,777,cm_asp_777,Decline to answer,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_act,2956,Answer,0,cm_act_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_act,2957,Answer,1,cm_act_1,Every day,45881677,,Every day,Meas Value,LOINC,Answer,LA14799-3,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,meds_assessment,radio,cm_act,2958,Answer,2,cm_act_2,A few days (<1 day/week),45884557,,Less than a day,Meas Value,LOINC,Answer,LA14482-6,S,skos:closeMatch,0.75,,,, +Yes,Yes,open-source,No,meds_assessment,radio,cm_act,2958,Answer,2,cm_act_2,A few days (<1 day/week),36210209,,Less than once a week,Meas Value,LOINC,Answer,LA27722-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_act,2959,Answer,3,cm_act_3,Some days (1-2 days/week),1620467,,A few days (1-2 days),Meas Value,LOINC,Answer,LA31669-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_act,2960,Answer,4,cm_act_4,Most days (3-4 days/week),1620862,,Most days (3-4 days),Meas Value,LOINC,Answer,LA31670-5,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_act,2961,Answer,99,cm_act_99,Don't know/not sure,45876636,,Don't know,Meas Value,LOINC,Answer,LA12688-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_act,2962,Answer,777,cm_act_777,Decline to answer,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ibp,2963,Answer,0,cm_ibp_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ibp,2964,Answer,1,cm_ibp_1,Every day,45881677,,Every day,Meas Value,LOINC,Answer,LA14799-3,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,meds_assessment,radio,cm_ibp,2965,Answer,2,cm_ibp_2,A few days (<1 day/week),45884557,,Less than a day,Meas Value,LOINC,Answer,LA14482-6,S,skos:closeMatch,0.75,,,, +Yes,Yes,open-source,No,meds_assessment,radio,cm_ibp,2965,Answer,2,cm_ibp_2,A few days (<1 day/week),36210209,,Less than once a week,Meas Value,LOINC,Answer,LA27722-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ibp,2966,Answer,3,cm_ibp_3,Some days (1-2 days/week),1620467,,A few days (1-2 days),Meas Value,LOINC,Answer,LA31669-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ibp,2967,Answer,4,cm_ibp_4,Most days (3-4 days/week),1620862,,Most days (3-4 days),Meas Value,LOINC,Answer,LA31670-5,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ibp,2968,Answer,99,cm_ibp_99,Don't know/not sure,45876636,,Don't know,Meas Value,LOINC,Answer,LA12688-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ibp,2969,Answer,777,cm_ibp_777,Decline to answer,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ant,2970,Answer,0,cm_ant_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ant,2971,Answer,1,cm_ant_1,Every day,45881677,,Every day,Meas Value,LOINC,Answer,LA14799-3,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,meds_assessment,radio,cm_ant,2972,Answer,2,cm_ant_2,A few days (<1 day/week),45884557,,Less than a day,Meas Value,LOINC,Answer,LA14482-6,S,skos:closeMatch,0.75,,,, +Yes,Yes,open-source,No,meds_assessment,radio,cm_ant,2972,Answer,2,cm_ant_2,A few days (<1 day/week),36210209,,Less than once a week,Meas Value,LOINC,Answer,LA27722-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ant,2973,Answer,3,cm_ant_3,Some days (1-2 days/week),1620467,,A few days (1-2 days),Meas Value,LOINC,Answer,LA31669-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ant,2974,Answer,4,cm_ant_4,Most days (3-4 days/week),1620862,,Most days (3-4 days),Meas Value,LOINC,Answer,LA31670-5,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ant,2975,Answer,99,cm_ant_99,Don't know/not sure,45876636,,Don't know,Meas Value,LOINC,Answer,LA12688-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ant,2976,Answer,777,cm_ant_777,Decline to answer,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_dcg,2977,Answer,0,cm_dcg_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_dcg,2978,Answer,1,cm_dcg_1,Every day,45881677,,Every day,Meas Value,LOINC,Answer,LA14799-3,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,meds_assessment,radio,cm_dcg,2979,Answer,2,cm_dcg_2,A few days (<1 day/week),45884557,,Less than a day,Meas Value,LOINC,Answer,LA14482-6,S,skos:closeMatch,0.75,,,, +Yes,Yes,open-source,No,meds_assessment,radio,cm_dcg,2979,Answer,2,cm_dcg_2,A few days (<1 day/week),36210209,,Less than once a week,Meas Value,LOINC,Answer,LA27722-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_dcg,2980,Answer,3,cm_dcg_3,Some days (1-2 days/week),1620467,,A few days (1-2 days),Meas Value,LOINC,Answer,LA31669-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_dcg,2981,Answer,4,cm_dcg_4,Most days (3-4 days/week),1620862,,Most days (3-4 days),Meas Value,LOINC,Answer,LA31670-5,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_dcg,2982,Answer,99,cm_dcg_99,Don't know/not sure,45876636,,Don't know,Meas Value,LOINC,Answer,LA12688-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_dcg,2983,Answer,777,cm_dcg_777,Decline to answer,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_slp,2984,Answer,0,cm_slp_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_slp,2985,Answer,1,cm_slp_1,Every day,45881677,,Every day,Meas Value,LOINC,Answer,LA14799-3,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,meds_assessment,radio,cm_slp,2986,Answer,2,cm_slp_2,A few days (<1 day/week),45884557,,Less than a day,Meas Value,LOINC,Answer,LA14482-6,S,skos:closeMatch,0.75,,,, +Yes,Yes,open-source,No,meds_assessment,radio,cm_slp,2986,Answer,2,cm_slp_2,A few days (<1 day/week),36210209,,Less than once a week,Meas Value,LOINC,Answer,LA27722-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_slp,2987,Answer,3,cm_slp_3,Some days (1-2 days/week),1620467,,A few days (1-2 days),Meas Value,LOINC,Answer,LA31669-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_slp,2988,Answer,4,cm_slp_4,Most days (3-4 days/week),1620862,,Most days (3-4 days),Meas Value,LOINC,Answer,LA31670-5,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_slp,2989,Answer,99,cm_slp_99,Don't know/not sure,45876636,,Don't know,Meas Value,LOINC,Answer,LA12688-0,S,skos:exactMatch,1,,,, @@ -770,8 +770,8 @@ Yes,Yes,open-source,No,ophthalmic_survey,radio,,1256,Question,via3,,"Because of Yes,Yes,open-source,No,ophthalmic_survey,radio,,1257,Question,via4,,When was the last time you had your eyes examined by an eye care provider (ophthalmologist or optometrist)?,40758529,,Date of last eye examination,Observation,LOINC,Clinical Observation,55400-6,S,skos:closeMatch,0.75,,,, Yes,Yes,open-source,Yes,ophthalmic_survey,radio,,1258,Question,via5,,You have indicated that you have not seen an eye care professional in the past 12 months. What is the main reason you have not visited an eye care professional in the past 12 months?,2005200069,2005200069,You have indicated that you have not seen an eye care professional in the past 12 months. What is the main reason you have not visited an eye care professional in the past 12 months?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,ophthalmic_survey,radio,,1259,Question,via6,,When was the last time you had an eye exam in which the pupils were dilated? (This would have made you temporarily sensitive to bright light),2005200070,2005200070,When was the last time you had an eye exam in which the pupils were dilated? (This would have made you temporarily sensitive to bright light),Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,ophthalmic_survey,text,,1260,Question,viastartts,,Ophthalmic Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Ophthalmic Survey Started Timestamp (from REDCap),,2005200574,Ophthalmic Survey -Yes,Yes,open-source,Yes,ophthalmic_survey,text,,1261,Question,viacmpts,,Ophthalmic Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Ophthalmic Survey Completed Timestamp (from REDCap),,2005200574,Ophthalmic Survey +Yes,Yes,open-source,Yes,ophthalmic_survey,text,,1260,Question,viastartts,,Ophthalmic Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Ophthalmic Survey Started Timestamp (from REDCap),,2005200574,Ophthalmic Survey +Yes,Yes,open-source,Yes,ophthalmic_survey,text,,1261,Question,viacmpts,,Ophthalmic Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Ophthalmic Survey Completed Timestamp (from REDCap),,2005200574,Ophthalmic Survey Yes,Yes,open-source,No,ophthalmic_survey,radio,via1,2219,Answer,1,via1_1,No difficulty,45878948,,No difficulty,Meas Value,LOINC,Answer,LA15227-4,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,ophthalmic_survey,radio,via1,2220,Answer,2,via1_2,A little difficulty,45883842,,A little difficulty,Meas Value,LOINC,Answer,LA15725-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,ophthalmic_survey,radio,via1,2221,Answer,3,via1_3,Moderate difficulty,45879201,,Moderate difficulty,Meas Value,LOINC,Answer,LA15726-5,S,skos:exactMatch,1,,,, @@ -816,8 +816,8 @@ Yes,Yes,open-source,Yes,paid5_dm_survey,radio,,1215,Question,paid_wr,,Worrying a Yes,Yes,open-source,Yes,paid5_dm_survey,radio,,1216,Question,paid_eng,,Feeling that diabetes is taking up too much of your mental and physical energy every day,2005200047,2005200047,Feeling that diabetes is taking up too much of your mental and physical energy every day,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,paid5_dm_survey,radio,,1217,Question,paid_cml,,Coping with complications of diabetes,2005200048,2005200048,Coping with complications of diabetes,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,paid5_dm_survey,calc,,1218,Question,paidscore,,PAID score,2005200049,2005200049,PAID score,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,paid5_dm_survey,text,,1219,Question,paidstartts,,PAID-5 DM Survey Start Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,PAID-5 DM Survey Start Timestamp (from REDCap),,2005200571,PAID-5 DM Survey -Yes,Yes,open-source,Yes,paid5_dm_survey,text,,1220,Question,paidcmpts,,PAID-5 DM Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,PAID-5 DM Survey Completed Timestamp (from REDCap),,2005200571,PAID-5 DM Survey +Yes,Yes,open-source,Yes,paid5_dm_survey,text,,1219,Question,paidstartts,,PAID-5 DM Survey Start Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,PAID-5 DM Survey Start Timestamp (from REDCap),,2005200571,PAID-5 DM Survey +Yes,Yes,open-source,Yes,paid5_dm_survey,text,,1220,Question,paidcmpts,,PAID-5 DM Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,PAID-5 DM Survey Completed Timestamp (from REDCap),,2005200571,PAID-5 DM Survey Yes,Yes,open-source,Yes,paid5_dm_survey,radio,paid_scrd,2118,Answer,0,paid_scrd_0,Not a problem,2005200213,2005200213,Not a problem,Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,paid5_dm_survey,radio,paid_scrd,2119,Answer,1,paid_scrd_1,Minor problem,2005200214,2005200214,Minor problem,Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,paid5_dm_survey,radio,paid_scrd,2120,Answer,2,paid_scrd_2,Moderate problem,2005200215,2005200215,Moderate problem,Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, @@ -865,14 +865,14 @@ Yes,Yes,open-source,No,physical_assessment,text,,1490,Question,pulse_vsorres,,He Yes,Yes,open-source,No,physical_assessment,text,,1491,Question,bp2_sysbp_vsorres,,Systolic (mmHg),3004249,,Systolic blood pressure,Measurement,LOINC,Clinical Observation,8480-6,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,physical_assessment,text,,1492,Question,bp2_diabp_vsorres,,Diastolic (mmHg),3012888,,Diastolic blood pressure,Measurement,LOINC,Clinical Observation,8462-4,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,physical_assessment,text,,1493,Question,pulse_vsorres_2,,Heart Rate (bpm),3027018,,Heart rate,Measurement,LOINC,Clinical Observation,8867-4,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,physical_assessment,yesno,paate_6hr,,Answer,1,paate_6hr_1,Yes,44792839,,Non fasting,Observation,SNOMED,Clinical Finding,368441000000106,S,skos:exactMatch,1, 6 hours | 4048382,,4048382,6 hours -Yes,Yes,open-source,No,physical_assessment,yesno,paate_6hr,,Answer,0,paate_6hr_0,No,4060364,,Fasting,Observation,SNOMED,Clinical Finding,16985007,S,skos:exactMatch,1, 6 hours | 4048382,,4048382,6 hours +Yes,Yes,open-source,No,physical_assessment,yesno,paate_6hr,,Answer,1,paate_6hr_1,Yes,44792839,,Non fasting,Observation,SNOMED,Clinical Finding,368441000000106,S,skos:exactMatch,1,6 hours | 4048382,,4048382,6 hours +Yes,Yes,open-source,No,physical_assessment,yesno,paate_6hr,,Answer,0,paate_6hr_0,No,4060364,,Fasting,Observation,SNOMED,Clinical Finding,16985007,S,skos:exactMatch,1,6 hours | 4048382,,4048382,6 hours Yes,Yes,open-source,Yes,physical_assessment,yesno,,,Question,paate_6hr,,"Have you had anything to eat or drink in the last six hours, including coffee or tea with milk or sugar or any other drink other than water?",2005200629,2005200629,"Have you had anything to eat or drink in the last six hours, including coffee or tea with milk or sugar or any other drink other than water?",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,physical_assessment,yesno,paate_6hr,,Answer,1,paate_6hr_1,Yes,45877994,,Yes,Meas Value,LOINC,Answer,LA33-6,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,physical_assessment,yesno,paate_6hr,,Answer,0,paate_6hr_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,preconsent_survey,text,,1065,Question,preconcmpdat,,Pre-consent survey/form date (date survey/form opened),4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,Pre-consent survey/form date (date survey/form opened),,2005200564,Pre-consent Survey -Yes,Yes,open-source,Yes,preconsent_survey,text,,1069,Question,preconstartts,,Pre-consent Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Pre-consent Survey Started Timestamp (from REDCap),,2005200564,Pre-consent Survey -Yes,Yes,open-source,Yes,preconsent_survey,text,,1070,Question,preconcmpts,,Pre-consent Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Pre-consent Survey Completed Timestamp (from REDCap),,2005200564,Pre-consent Survey +Yes,Yes,open-source,Yes,preconsent_survey,text,,1069,Question,preconstartts,,Pre-consent Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Pre-consent Survey Started Timestamp (from REDCap),,2005200564,Pre-consent Survey +Yes,Yes,open-source,Yes,preconsent_survey,text,,1070,Question,preconcmpts,,Pre-consent Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Pre-consent Survey Completed Timestamp (from REDCap),,2005200564,Pre-consent Survey Yes,Yes,open-source,No,px_food_insecurity_survey,text,,1313,Question,pxsficmpdat,,PhenX Food Insecurity survey date,4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,PhenX Food Insecurity survey date,,2005200584,PhenX Food Insecurity Survey Yes,Yes,open-source,No,px_food_insecurity_survey,radio,,1316,Question,pxfi1,,"The first statement is, ""The food that (I/we) bought just didn't last, and (I/we) didn't have money to get more."" Was that often, sometimes, or never true for (you/your household) in the last 12 months?",36306143,,Within the past 12 months the food we bought just didn't last and we didn't have money to get more [U.S. FSS],Observation,LOINC,Survey,88123-5,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_food_insecurity_survey,radio,,1317,Question,pxfi2,,"""(I/we) couldn't afford to eat balanced meals."" Was that often, sometimes, or never true for (you/your household) in the last 12 months?",36660487,,"In the last 12 months, we couldn't afford to eat balanced meals [U.S. FSS]",Observation,LOINC,Survey,95248-1,S,skos:exactMatch,1,,,, @@ -880,8 +880,8 @@ Yes,Yes,open-source,No,px_food_insecurity_survey,radio,,1318,Question,pxfi3,,"In Yes,Yes,open-source,No,px_food_insecurity_survey,radio,,1319,Question,food_insecurity_change_diet_frequency,,"How often did this happen - almost every month, some months but not every month, or in only 1 or 2 months?",36660018,,"In the last 12 months, how often did you cut the size of your meals or skip meals because there wasn't enough money for food [U.S. FSS]",Observation,LOINC,Survey,95250-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,px_food_insecurity_survey,radio,,1320,Question,pxfi4,,"In the last 12 months, did you ever eat less than you felt you should because there wasn't enough money to buy food?",36659800,,"In the last 12 months, did you ever eat less than you felt you should because there wasn't enough money for food [U.S. FSS]",Observation,LOINC,Survey,95251-5,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_food_insecurity_survey,radio,,1321,Question,pxfi5,,"In the last 12 months, were you ever hungry but didn't eat because you couldn't afford enough food?",36660509,,"In the last 12 months, were you ever hungry but didn't eat because there wasn't enough money for food [U.S. FSS]",Observation,LOINC,Survey,95252-3,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,px_food_insecurity_survey,text,,1322,Question,pxfistartts,,PhenX Food Insecurity Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:exactMatch,1,PhenX Food Insecurity Survey Started Timestamp (from REDCap),,2005200584,PhenX Food Insecurity Survey -Yes,Yes,open-source,Yes,px_food_insecurity_survey,text,,1323,Question,pxsficmpts,,PhenX Food Insecurity Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:exactMatch,1,PhenX Food Insecurity Survey Completed Timestamp (from REDCap),,2005200584,PhenX Food Insecurity Survey +Yes,Yes,open-source,Yes,px_food_insecurity_survey,text,,1322,Question,pxfistartts,,PhenX Food Insecurity Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:exactMatch,1,PhenX Food Insecurity Survey Started Timestamp (from REDCap),,2005200584,PhenX Food Insecurity Survey +Yes,Yes,open-source,Yes,px_food_insecurity_survey,text,,1323,Question,pxsficmpts,,PhenX Food Insecurity Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:exactMatch,1,PhenX Food Insecurity Survey Completed Timestamp (from REDCap),,2005200584,PhenX Food Insecurity Survey Yes,Yes,open-source,Yes,px_food_insecurity_survey,text,,1324,Question,px270301_metadata,,PhenX MetaData,2005200102,2005200102,PhenX MetaData,Observation,AIREADI,Survey,,S,skos:exactMatch,1,PhenX Food Insecurity MetaData,,2005200584,PhenX Food Insecurity Survey Yes,Yes,open-source,No,px_food_insecurity_survey,radio,pxfi1,2473,Answer,1,pxfi1_1,Often true,36309834,,Often true,Meas Value,LOINC,Answer,LA28397-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_food_insecurity_survey,radio,pxfi1,2474,Answer,2,pxfi1_2,Sometimes true,45877955,,Sometimes true,Meas Value,LOINC,Answer,LA6729-3,S,skos:exactMatch,1,,,, @@ -991,8 +991,8 @@ Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne9,2552,Answe Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne9,2553,Answer,2,pxne9_2,Somewhat disagree,45879539,,Somewhat disagree,Meas Value,LOINC,Answer,LA15234-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne9,2554,Answer,3,pxne9_3,Somewhat agree,45884684,,Somewhat agree,Meas Value,LOINC,Answer,LA15235-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne9,2555,Answer,4,pxne9_4,Strongly agree,45879208,,Strongly agree,Meas Value,LOINC,Answer,LA15237-3,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne9_,2556,Answer,555,pxne9__555,Don't know/Not sure,45876636,,Don't know,Meas Value,LOINC,Answer,LA12688-0,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne9_,2557,Answer,777,pxne9__777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, +Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne9,2556,Answer,555,pxne9_555,Don't know/Not sure,45876636,,Don't know,Meas Value,LOINC,Answer,LA12688-0,S,skos:exactMatch,1,,,, +Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne9,2557,Answer,777,pxne9_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne10,2558,Answer,1,pxne10_1,Strongly disagree,45882953,,Strongly disagree,Meas Value,LOINC,Answer,LA15236-5,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne10,2559,Answer,2,pxne10_2,Somewhat disagree,45879539,,Somewhat disagree,Meas Value,LOINC,Answer,LA15234-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne10,2560,Answer,3,pxne10_3,Somewhat agree,45884684,,Somewhat agree,Meas Value,LOINC,Answer,LA15235-7,S,skos:exactMatch,1,,,, @@ -1095,8 +1095,8 @@ Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,radio,,1401,Quest Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,radio,,1402,Question,pxrd52,,In the Past Year?,2005200541,2005200541,How different would your life be now if you HAD NOT BEEN treated in a racist and unfair way? In the Past Year?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,radio,,1403,Question,pxrd53,,In your entire life?,2005200542,2005200542,How different would your life be now if you HAD NOT BEEN treated in a racist and unfair way? In your entire life?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,radio,,1404,Question,pxrd54,,"On a scale of 1-6, how stressful was this for you? 1 = Not at all stressful; 6 = Extremely stressful",2005200543,2005200543,"How different would your life be now if you HAD NOT BEEN treated in a racist and unfair way? On a scale of 1-6, how stressful was this for you? 1 = Not at all stressful; 6 = Extremely stressful",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,text,,1405,Question,pxrdcmpts,,PhenX Racial/Ethnic Discrimination Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:exactMatch,1,PhenX Racial/Ethnic Discrimination Survey Completed Timestamp (from REDCap),,2005200586,PhenX Racial/Ethnic Survey -Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,text,,1406,Question,pxrdstartts,,PhenX Racial/Ethnic Discrimination Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:exactMatch,1,PhenX Racial/Ethnic Discrimination Survey Started Timestamp (from REDCap),,2005200586,PhenX Racial/Ethnic Survey +Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,text,,1405,Question,pxrdcmpts,,PhenX Racial/Ethnic Discrimination Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:exactMatch,1,PhenX Racial/Ethnic Discrimination Survey Completed Timestamp (from REDCap),,2005200586,PhenX Racial/Ethnic Survey +Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,text,,1406,Question,pxrdstartts,,PhenX Racial/Ethnic Discrimination Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:exactMatch,1,PhenX Racial/Ethnic Discrimination Survey Started Timestamp (from REDCap),,2005200586,PhenX Racial/Ethnic Survey Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,text,,1407,Question,px281501_metadata,,PhenX Racial/Ethnic MetaData,2005200102,2005200102,PhenX MetaData,Observation,AIREADI,Survey,,S,skos:exactMatch,1,PhenX Racial/Ethnic MetaData,,2005200586,PhenX Racial/Ethnic Survey Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd1,2605,Answer,1,pxrd1_1,Never,45876662,,Never,Meas Value,LOINC,Answer,LA6270-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd1,2606,Answer,2,pxrd1_2,Once in a while,45879593,,Occasionally,Meas Value,LOINC,Answer,LA6483-7,S,skos:closeMatch,1,,,, @@ -1146,9 +1146,9 @@ Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd8,2649,A Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd8,2650,Answer,5,pxrd8_5,Most of the time,45879199,,Most of the time,Meas Value,LOINC,Answer,LA14734-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd8,2651,Answer,6,pxrd8_6,Almost all the time,45883838,,All the time,Meas Value,LOINC,Answer,LA14726-6,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd8,2652,Answer,777,pxrd8_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd9,2653,Answer,1,pxrd9_1,1 - Not at all stressful,36210226,,Not at all bothersome,Meas Value,LOINC,Answer,LA24969-0,S,skos:closeMatch,1,,,, -Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd9,2654,Answer,6,pxrd9_6,6 - Extremely stressful,36210124,,Extremely bothersome,Meas Value,LOINC,Answer,LA27766-7,S,skos:closeMatch,1,,,, -Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd9,2655,Answer,777,pxrd9_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, +Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pdrx9,2653,Answer,1,pdrx9_1,1 - Not at all stressful,36210226,,Not at all bothersome,Meas Value,LOINC,Answer,LA24969-0,S,skos:closeMatch,1,,,, +Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pdrx9,2654,Answer,6,pdrx9_6,6 - Extremely stressful,36210124,,Extremely bothersome,Meas Value,LOINC,Answer,LA27766-7,S,skos:closeMatch,1,,,, +Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pdrx9,2655,Answer,777,pdrx9_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd10,2656,Answer,1,pxrd10_1,Never,45876662,,Never,Meas Value,LOINC,Answer,LA6270-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd10,2657,Answer,2,pxrd10_2,Once in a while,45879593,,Occasionally,Meas Value,LOINC,Answer,LA6483-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd10,2658,Answer,3,pxrd10_3,Sometimes,45882528,,Sometimes,Meas Value,LOINC,Answer,LA10082-8,S,skos:exactMatch,1,,,, @@ -1442,8 +1442,8 @@ Yes,Yes,open-source,No,px_sdoh_combined_survey,radio,,1299,Question,pxdhc4,,A do Yes,Yes,open-source,No,px_sdoh_combined_survey,radio,,1300,Question,pxdhc5,,A doctor or nurse acts as if he or she is afraid of you.,40192423,,How often does a doctor or nurse act as if he or she is afraid of you when you go to a doctor's office or other health care provider?,Observation,PPI,Question,sdoh_dms_5,S,skos:closeMatch,0.75,,,, Yes,Yes,open-source,No,px_sdoh_combined_survey,radio,,1301,Question,pxdhc6,,A doctor or nurse acts as if he or she is better than you.,40192383,,How often does a doctor or nurse act as if he or she is better than you when you go to a doctor's office or other health care provider?,Observation,PPI,Question,sdoh_dms_7,S,skos:closeMatch,0.75,,,, Yes,Yes,open-source,No,px_sdoh_combined_survey,radio,,1302,Question,pxdhc7,,You feel like a doctor or nurse is not listening to what you were saying,40192394,,How often do you feel like a doctor or nurse is not listening to what you were saying. when you go to a doctor's office or other health care provider?,Observation,PPI,Question,sdoh_dms_6,S,skos:closeMatch,0.75,,,, -Yes,Yes,open-source,Yes,px_sdoh_combined_survey,text,,1303,Question,pxsdohstartts,,PhenX SDOH Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,PhenX SDOH Survey Started Timestamp (from REDCap),,2005200575,PhenX SDOH Survey -Yes,Yes,open-source,Yes,px_sdoh_combined_survey,text,,1304,Question,pxsdohcmpts,,PhenX SDOH Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,PhenX SDOH Survey Completed Timestamp (from REDCap),,2005200575,PhenX SDOH Survey +Yes,Yes,open-source,Yes,px_sdoh_combined_survey,text,,1303,Question,pxsdohstartts,,PhenX SDOH Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,PhenX SDOH Survey Started Timestamp (from REDCap),,2005200575,PhenX SDOH Survey +Yes,Yes,open-source,Yes,px_sdoh_combined_survey,text,,1304,Question,pxsdohcmpts,,PhenX SDOH Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,PhenX SDOH Survey Completed Timestamp (from REDCap),,2005200575,PhenX SDOH Survey Yes,Yes,open-source,Yes,px_sdoh_combined_survey,text,,1305,Question,px270201_metadata,,PhenX English Proficiency MetaData,2005200102,2005200102,PhenX MetaData,Observation,AIREADI,Survey,,S,skos:exactMatch,1,PhenX English Proficiency MetaData,,2005200576,PhenX English Proficiency Survey Yes,Yes,open-source,Yes,px_sdoh_combined_survey,text,,1306,Question,px011002_metadata,,PhenX Education Attainment MetaData,2005200102,2005200102,PhenX MetaData,Observation,AIREADI,Survey,,S,skos:exactMatch,1,PhenX Education Attainment MetaData,,2005200577,PhenX Education Attainment Survey Yes,Yes,open-source,Yes,px_sdoh_combined_survey,text,,1307,Question,px280301_metadata,,PhenX Job Security MetaData,2005200102,2005200102,PhenX MetaData,Observation,AIREADI,Survey,,S,skos:exactMatch,1,PhenX Job Security MetaData,,2005200578,PhenX Job Security Survey @@ -1672,9 +1672,9 @@ Yes,Yes,open-source,No,px_sdoh_combined_survey,radio,pxdhc7,2472,Answer,777,pxdh Yes,Yes,protected,No,current_medications,dropdown,cmroute,2997,Answer,5,cmroute_5,Nasal,4262914,,Nasal,Route,SNOMED,Qualifier Value,46713006,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,recruitment_survey,text,,1025,Question,reccmpdat,,Recruitment survey date (date survey/form opened),4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,,,2005200561,Recruitment Survey Yes,Yes,protected,No,current_medications,dropdown,cmroute,2998,Answer,6,cmroute_6,Oral,4132161,,Oral,Route,SNOMED,Qualifier Value,26643006,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,recruitment_survey,text,,1029,Question,recstartts,,Recruitment Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Recruitment Survey Started Timestamp (from REDCap),,2005200561,Recruitment Survey +Yes,Yes,open-source,Yes,recruitment_survey,text,,1029,Question,recstartts,,Recruitment Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Recruitment Survey Started Timestamp (from REDCap),,2005200561,Recruitment Survey Yes,Yes,protected,No,current_medications,dropdown,cmroute,2999,Answer,7,cmroute_7,Rectal,4290759,,Rectal,Route,SNOMED,Qualifier Value,37161004,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,recruitment_survey,text,,1030,Question,reccmpts,,Recruitment Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Recruitment Survey Completed Timestamp (from REDCap),,2005200561,Recruitment Survey +Yes,Yes,open-source,Yes,recruitment_survey,text,,1030,Question,reccmpts,,Recruitment Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Recruitment Survey Completed Timestamp (from REDCap),,2005200561,Recruitment Survey Yes,Yes,protected,No,current_medications,dropdown,cmroute,3000,Answer,8,cmroute_8,Inhalation,40486069,,Respiratory tract,Route,SNOMED,Qualifier Value,447694001,S,skos:closeMatch,1,,,, Yes,Yes,open-source,Yes,retinal_imaging_v2,yesno,,,Question,rtop_odd,,OptoMed-Disc centered-CFP,2005200289,2005200289,OptoMed-Disc centered-CFP,Observation,AIREADI-Vision,Observable Entity,,S,skos:exactMatch,1,right eye|45876703,,45876703,Right eye Yes,Yes,protected,No,current_medications,dropdown,cmroute,3001,Answer,9,cmroute_9,Subcutaneous,4142048,,Subcutaneous,Route,SNOMED,Qualifier Value,34206005,S,skos:exactMatch,1,,,, @@ -1854,8 +1854,8 @@ Yes,Yes,open-source,Yes,screening_survey,radio,,1046,Question,cmtrt_a1c,,"Do you Yes,Yes,open-source,Yes,screening_survey,yesno,,1047,Question,cmtrt_insln,,Do you inject insulin to control your blood glucose levels?,2005200549,2005200549,Do you inject insulin to control your blood glucose levels?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,screening_survey,yesno,,1048,Question,cmtrt_glcs,,"Do you use other injections to control your blood glucose levels? Examples: Victoza, Ozempic, Symlin, Tanzeum, and Trulicity",2005200550,2005200550,"Do you use other injections to control your blood glucose levels? Examples: Victoza, Ozempic, Symlin, Tanzeum, and Trulicity",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,screening_survey,yesno,,1049,Question,cmtrt_lfst,,"Do you use lifestyle changes to control your A1C and blood glucose levels? Examples: regular exercise, avoiding sugary foods and beverages, eating a balanced diet with lots of vegetables, sticking to a consistent eating schedule",2005200004,2005200004,"Do you use lifestyle changes to control your A1C and blood glucose levels? Examples: regular exercise, avoiding sugary foods and beverages, eating a balanced diet with lots of vegetables, sticking to a consistent eating schedule",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,screening_survey,text,,1060,Question,scrstartts,,Screening Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Screening Survey Started Timestamp (from REDCap),,2005200563,Screening Survey -Yes,Yes,open-source,Yes,screening_survey,text,,1061,Question,scrcmpts,,Screening Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Screening Survey Completed Timestamp (from REDCap),,2005200563,Screening Survey +Yes,Yes,open-source,Yes,screening_survey,text,,1060,Question,scrstartts,,Screening Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Screening Survey Started Timestamp (from REDCap),,2005200563,Screening Survey +Yes,Yes,open-source,Yes,screening_survey,text,,1061,Question,scrcmpts,,Screening Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Screening Survey Completed Timestamp (from REDCap),,2005200563,Screening Survey Yes,Yes,open-source,No,screening_survey,radio,cmtrt_a1c,1790,Answer,1,cmtrt_a1c_1,Yes,4016042,,Diabetic on oral treatment,Observation,SNOMED,Clinical Finding,170746002,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,screening_survey,radio,cmtrt_a1c,1791,Answer,0,cmtrt_a1c_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,screening_survey,yes,mhterm_dm1,,Answer,1,mhterm_dm1_1,Yes,45877994,,Yes,Meas Value,LOINC,Answer,LA33-6,S,skos:exactMatch,1,,,, @@ -1907,8 +1907,8 @@ Yes,Yes,open-source,Yes,substance_use_survey,radio,,1188,Question,sumrjcdur,,Do Yes,Yes,open-source,Yes,substance_use_survey,checkbox,,1189,Question,sumrjtrt,,In what form do you usually use marijuana? (check all that apply),2005200037,2005200037,In what form do you usually use marijuana? (check all that apply),Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,substance_use_survey,dropdown,,1190,Question,sumrjceddur,,How many total years have you used marijuana?,2005200038,2005200038,How many total years have you used marijuana?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,substance_use_survey,dropdown,,1191,Question,sumrjfr,,"When you used marijuana, approximately how many days in a typical week would you use it?",2005200039,2005200039,"When you used marijuana, approximately how many days in a typical week would you use it?",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,substance_use_survey,text,,1192,Question,sustartts,,Substance Use Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Substance Use Survey Started Timestamp (from REDCap),,2005200569,Substance Use Survey -Yes,Yes,open-source,Yes,substance_use_survey,text,,1193,Question,sucmpts,,Substance Use Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Substance Use Survey Completed Timestamp (from REDCap),,2005200569,Substance Use Survey +Yes,Yes,open-source,Yes,substance_use_survey,text,,1192,Question,sustartts,,Substance Use Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Substance Use Survey Started Timestamp (from REDCap),,2005200569,Substance Use Survey +Yes,Yes,open-source,Yes,substance_use_survey,text,,1193,Question,sucmpts,,Substance Use Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Substance Use Survey Completed Timestamp (from REDCap),,2005200569,Substance Use Survey Yes,Yes,open-source,No,substance_use_survey,radio,susmkncf,1999,Answer,1,susmkncf_1,Yes,40766306,,Smoked at least 100 cigarettes in entire life,Observation,LOINC,Clinical Observation,63581-3,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,substance_use_survey,radio,susmkncf,2000,Answer,0,susmkncf_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,substance_use_survey,radio,susmkncf,2001,Answer,777,susmkncf_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, @@ -1920,7 +1920,7 @@ Yes,Yes,open-source,No,substance_use_survey,radio,susmkcdur,2006,Answer,777,susm Yes,Yes,open-source,No,substance_use_survey,dropdown,susmkstoage,2007,Answer,98,susmkstoage_98,More than 60 years old,45882614,,60 or older,Meas Value,LOINC,Answer,LA16058-2,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,substance_use_survey,dropdown,susmkstoage,2008,Answer,999,susmkstoage_999,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,substance_use_survey,dropdown,susmkdosfr,2009,Answer,21,susmkdosfr_21,21-30 (up to 1.5 packs),45881687,,21-30 (2 points),Meas Value,LOINC,Answer,LA15914-7,S,skos:closeMatch,1,,,, -Yes,Yes,open-source,No,substance_use_survey,dropdown,susmkdosfr,2010,Answer,31,susmkdosfr_31,31-40 (up to 2 packs),45884478,,31 or more (3 points),Meas Value,LOINC,Answer,LA15915-4,S,skos:closeMatch,1,,,, +Yes,Yes,open-source,Yes,substance_use_survey,dropdown,susmkdosfr,2010,Answer,31,susmkdosfr_31,31-40 (up to 2 packs),2005200636,2005200636,31-40 (up to 2 packs),Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,substance_use_survey,dropdown,susmkdosfr,2011,Answer,41,susmkdosfr_41,41-50 (up to 2.5 packs),2005200194,2005200194,41-50 (up to 2.5 packs),Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,substance_use_survey,dropdown,susmkdosfr,2012,Answer,51,susmkdosfr_51,More than 50 (3 or more packs),2005200195,2005200195,More than 50 (3 or more packs),Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,substance_use_survey,dropdown,susmkdosfr,2013,Answer,999,susmkdosfr_999,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, diff --git a/redCapDataDictionaryWithExtension/value-set-mapping-common/_ai_readi_redcap_value_set_mapping_common_map2omop.csv b/redCapDataDictionaryWithExtension/value-set-mapping-common/_ai_readi_redcap_value_set_mapping_common_map2omop.csv index 8920160..7833c7b 100644 --- a/redCapDataDictionaryWithExtension/value-set-mapping-common/_ai_readi_redcap_value_set_mapping_common_map2omop.csv +++ b/redCapDataDictionaryWithExtension/value-set-mapping-common/_ai_readi_redcap_value_set_mapping_common_map2omop.csv @@ -17,12 +17,12 @@ Yes,Yes,open-source,Yes,bcva,calc,,1510,Question,viaospscore,,Photopic LogMAR OS Yes,No,open-source,Yes,bcva,text,,1511,Question,viaodmsf,,Snellen fraction - Mesopic VA - OD,2005200054,2005200054,Snellen fraction - Mesopic VA - OD,Measurement,AIREADI-Vision,Clinical Observation,,S,skos:exactMatch,1,Snellen fraction - Mesopic VA - OD,,45876703,Right eye Yes,No,open-source,Yes,bcva,text,,1512,Question,viaosmsf,,Snellen fraction - Mesopic VA - OS,2005200055,2005200055,Snellen fraction - Mesopic VA - OS,Measurement,AIREADI-Vision,Clinical Observation,,S,skos:exactMatch,1,Snellen fraction - Mesopic VA - OS,,45883829,Left eye Yes,Yes,protected,No,screening_survey,radio,,1050,Question,scrsex,,"What sex were you assigned at birth? That is, what is on your original birth certificate?",46235213,,Sex assigned at birth,Observation,LOINC,Clinical Observation,76689-9,S,skos:closeMatch,1,,,, -Yes,Yes,protected,No,screening_survey,text,,1051,Question,scrsexot,,Other (please specify),46235213,,Sex assigned at birth,Observation,LOINC,Clinical Observation,76689-9,S,skos:exactMatch,1,,,, +Yes,Yes,protected,No,screening_survey,text,,1051,Question,scrsexot,,Other (please specify),46235213,,Sex assigned at birth,Observation,LOINC,Clinical Observation,76689-9,S,skos:closeMatch,0.75,,,, Yes,Yes,protected,No,screening_survey,checkbox,,1052,Question,ethnic,,"Are you of Hispanic, Latina/x or Spanish origin? Please check all that apply.",42868351,,"Hispanic, latino-a, or spanish origin",Observation,LOINC,Clinical Observation,69854-8,S,skos:exactMatch,1,,,, -Yes,Yes,protected,No,screening_survey,text,,1053,Question,ethnicot,,Other (please specify),42868351,,"Hispanic, latino-a, or spanish origin",Observation,LOINC,Clinical Observation,69854-8,S,skos:exactMatch,1,,,, +Yes,Yes,protected,No,screening_survey,text,,1053,Question,ethnicot,,Other (please specify),42868351,,"Hispanic, latino-a, or spanish origin",Observation,LOINC,Clinical Observation,69854-8,S,skos:closeMatch,0.75,,,, Yes,Yes,protected,No,screening_survey,calc,,1054,Question,ethnicscore,,Hispanic score (needed for demographics screening logic),0,,No matching concept,,,,,,,,,,, Yes,Yes,protected,No,screening_survey,checkbox,,1055,Question,race,,How would you describe your race/ethnicity? (check all that apply),3050381,,Race or ethnicity,Observation,LOINC,Clinical Observation,46463-6,S,skos:closeMatch,1,,,, -Yes,Yes,protected,No,screening_survey,text,,1056,Question,raceot,,Other (please describe),3050381,,Race or ethnicity,Observation,LOINC,Clinical Observation,46463-6,S,skos:closeMatch,1,,,, +Yes,Yes,protected,No,screening_survey,text,,1056,Question,raceot,,Other (please describe),3050381,,Race or ethnicity,Observation,LOINC,Clinical Observation,46463-6,S,skos:closeMatch,0.75,,,, Yes,Yes,protected,No,screening_survey,text,,1057,Question,racetrib,,Tribal affiliation (please describe),36660477,,Tribal affiliation,Observation,LOINC,Clinical Observation,95370-3,S,skos:closeMatch,1,,,, Yes,Yes,protected,No,screening_survey,radio,,1058,Question,race2,,Which one of these groups would you say best represents your race?,3046853,,Race,Observation,LOINC,Clinical Observation,32624-9,S,skos:closeMatch,1,,,, Yes,Yes,protected,Yes,screening_survey,text,,1059,Question,ancestry,,"What is your ancestry or ethnic origin?(Examples: Italian, Jamaican, African American, Cambodian, Cape Verdean, Cherokee, Navajo, Nez Pearce, Norwegian, Dominican, French Canadian, Haitian, Korean, Lebanese, Polish, Nigerian, Mexican, Taiwanese, Ukrainian, and so on.)",2005200557,2005200557,"What is your ancestry or ethnic origin?(Examples: Italian, Jamaican, African American, Cambodian, Cape Verdean, Cherokee, Navajo, Nez Pearce, Norwegian, Dominican, French Canadian, Haitian, Korean, Lebanese, Polish, Nigerian, Mexican, Taiwanese, Ukrainian, and so on.)",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, @@ -55,9 +55,9 @@ Yes,Yes,open-source,No,cesd10_survey,radio,,1204,Question,ces8,,I was happy,1761 Yes,Yes,open-source,No,cesd10_survey,radio,,1205,Question,ces9,,I felt lonely,1761319,,Feeling lonely,Observation,LOINC,Survey,100780-6,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,cesd10_survey,radio,,1206,Question,ces10,,"I could not ""get going""",1761073,,Lack of energy,Observation,LOINC,Survey,100786-3,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,cesd10_survey,calc,,1207,Question,cestl,,CESD-10 Score,1761347,,Total Score CES-D,Observation,LOINC,Survey,100787-1,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,cesd10_survey,text,,1208,Question,cesstartts,,CES-D-10 Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,CES-D-10 Survey Started Timestamp (from REDCap),,2005200570,CES-D-10 Survey +Yes,Yes,open-source,Yes,cesd10_survey,text,,1208,Question,cesstartts,,CES-D-10 Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,CES-D-10 Survey Started Timestamp (from REDCap),,2005200570,CES-D-10 Survey Yes,Yes,protected,Yes,health_survey,text,,1132,Question,mhcat_dmtaot,,Other (please specify):,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,2005200451,,2005200451,Other types of Dementia or Alzheimer's Disease -Yes,Yes,open-source,Yes,cesd10_survey,text,,1209,Question,cescmpts,,CES-D-10 Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,CES-D-10 Survey Completed Timestamp (from REDCap),,2005200570,CES-D-10 Survey +Yes,Yes,open-source,Yes,cesd10_survey,text,,1209,Question,cescmpts,,CES-D-10 Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,CES-D-10 Survey Completed Timestamp (from REDCap),,2005200570,CES-D-10 Survey Yes,Yes,open-source,Yes,cesd10_survey,radio,ces1,2078,Answer,0,ces1_0,Rarely or none of the time (< 1 day),2005200141,2005200141,Rarely or none of the time (< 1 day),Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,cesd10_survey,radio,ces1,2079,Answer,1,ces1_1,Some or a little of the time (1-2 days),2005200142,2005200142,Some or a little of the time (1-2 days),Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,protected,Yes,health_survey,text,,1136,Question,mhoccur_cnsot,,"If yes, please specify:",2005200455,2005200455,Neurocognitive disorder please specify,Observation,AIREADI,Survey,,S,skos:exactMatch,1,36309562,,36309562,Other neurological conditions @@ -103,14 +103,14 @@ Yes,Yes,open-source,Yes,cesd10_survey,radio,ces10,2117,Answer,3,ces10_3,All of t Yes,Yes,open-source,No,consent_survey,text,,1071,Question,icf_dat,,Consent survey/form date (date survey/form opened),4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,Consent survey/form date (date survey/form opened),,2005200565,Consent Survey Yes,Yes,open-source,No,consent_survey,checkbox,,1074,Question,c184390,,Paper consent obtained,3018196,,Informed consent obtained,Observation,LOINC,Clinical Observation,19826-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,consent_survey,text,,1075,Question,c184390_dat,,Date paper consent completed,4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,Date paper consent completed,,2005200587,Paper Consent Completed -Yes,Yes,open-source,Yes,consent_survey,text,,1081,Question,icfsvyts,,Consent Survey Start Timestamp,2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Consent Survey Start Timestamp,,2005200565,Consent Survey -Yes,Yes,open-source,Yes,consent_survey,text,,1082,Question,icfcmpts,,Consent Survey Completed Timestamp,2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Consent Survey Completed Timestamp,,2005200565,Consent Survey +Yes,Yes,open-source,Yes,consent_survey,text,,1081,Question,icfsvyts,,Consent Survey Start Timestamp,2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Consent Survey Start Timestamp,,2005200565,Consent Survey +Yes,Yes,open-source,Yes,consent_survey,text,,1082,Question,icfcmpts,,Consent Survey Completed Timestamp,2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Consent Survey Completed Timestamp,,2005200565,Consent Survey Yes,Yes,open-source,No,demographics_survey,text,,1106,Question,dmgcmpdat,,Demographic survey date (date survey/form opened),4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,Demographic survey date (date survey/form opened),,2005200567,Demographic Survey Yes,Yes,open-source,No,demographics_survey,text,,1111,Question,brthyy,,Year (e.g. 1967),0,,No matching concept,,,,,,,,,,, Yes,Yes,open-source,No,demographics_survey,text,,1112,Question,cage,,Age (in years),3022304,,Age,Observation,LOINC,Clinical Observation,30525-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,demographics_survey,radio,,1113,Question,cl_maristat,,Marital Status,4053609,,Marital status,Observation,SNOMED,Observable Entity,125680007,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,demographics_survey,text,,1117,Question,dmgstartts,,Demographics Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Demographics Survey Started Timestamp (from REDCap),,2005200567,Demographic Survey -Yes,Yes,open-source,Yes,demographics_survey,text,,1118,Question,dmgcmpts,,Demograhics Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Demograhics Survey Completed Timestamp (from REDCap),,2005200567,Demographic Survey +Yes,Yes,open-source,Yes,demographics_survey,text,,1117,Question,dmgstartts,,Demographics Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Demographics Survey Started Timestamp (from REDCap),,2005200567,Demographic Survey +Yes,Yes,open-source,Yes,demographics_survey,text,,1118,Question,dmgcmpts,,Demograhics Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Demograhics Survey Completed Timestamp (from REDCap),,2005200567,Demographic Survey Yes,Yes,open-source,No,demographics_survey,radio,cl_maristat,1881,Answer,C51773,cl_maristat_C51773,Married,45876756,,Married,Meas Value,LOINC,Answer,LA48-4,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,demographics_survey,radio,cl_maristat,1882,Answer,C51774,cl_maristat_C51774,Single,45879879,,Single,Meas Value,LOINC,Answer,LA17717-2,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,demographics_survey,radio,cl_maristat,1883,Answer,C51776,cl_maristat_C51776,Divorced,45883375,,Divorced,Meas Value,LOINC,Answer,LA51-8,S,skos:exactMatch,1,,,, @@ -149,8 +149,8 @@ Yes,Yes,open-source,No,diabetes_survey,radio,,1230,Question,dmlfrveg,,"In a typi Yes,Yes,open-source,Yes,diabetes_survey,radio,,1231,Question,dmledu,,"How often would you say that you engage in diabetes health education? (Examples: consulting with a dietician, attending support groups, reading books on diabetes, using diabetes-focused websites, watching TV shows on health, or using health-focused apps on your phone or tablet)",2005200307,2005200307,"How often would you say that you engage in diabetes health education? (Examples: consulting with a dietician, attending support groups, reading books on diabetes, using diabetes-focused websites, watching TV shows on health, or using health-focused apps on your phone or tablet)",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,diabetes_survey,radio,,1232,Question,dmlfeet,,How often do you inspect your feet?,2005200308,2005200308,How often do you inspect your feet?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,diabetes_survey,radio,,1233,Question,dmlmd,,Which of the following options best describes you with respect to physician care and medications?,2005200309,2005200309,Which of the following options best describes you with respect to physician care and medications?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,diabetes_survey,text,,1234,Question,dmlstartts,,Diabetes Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Diabetes Survey Started Timestamp (from REDCap),,2005200572,Diabetes Survey -Yes,Yes,open-source,Yes,diabetes_survey,text,,1235,Question,dmlcmpts,,Diabetes Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Diabetes Survey Completed Timestamp (from REDCap),,2005200572,Diabetes Survey +Yes,Yes,open-source,Yes,diabetes_survey,text,,1234,Question,dmlstartts,,Diabetes Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Diabetes Survey Started Timestamp (from REDCap),,2005200572,Diabetes Survey +Yes,Yes,open-source,Yes,diabetes_survey,text,,1235,Question,dmlcmpts,,Diabetes Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Diabetes Survey Completed Timestamp (from REDCap),,2005200572,Diabetes Survey Yes,Yes,open-source,Yes,diabetes_survey,radio,dmlvex,2143,Answer,10,dmlvex_10,At least 30 minutes daily 3 or more days a week,2005200312,2005200312,At least 30 minutes daily 3 or more days a week,Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,diabetes_survey,radio,dmlvex,2144,Answer,5,dmlvex_5,Less than 30 minutes daily less than 3 days a week,2005200313,2005200313,Less than 30 minutes daily less than 3 days a week,Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,diabetes_survey,radio,dmlvex,2145,Answer,0,dmlvex_0,Rarely or none,45883771,,Rarely or never,Meas Value,LOINC,Answer,LA15665-5,S,skos:exactMatch,1,,,, @@ -204,8 +204,8 @@ Yes,Yes,open-source,Yes,dietary_survey,radio,,1245,Question,diet7,,How many time Yes,Yes,open-source,Yes,dietary_survey,radio,,1246,Question,diet8,,"How much margarine, butter, or meat fat do you use to season vegetables or put on potatoes, bread or corn?",2005200062,2005200062,"How much margarine, butter, or meat fat do you use to season vegetables or put on potatoes, bread or corn?",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,dietary_survey,radio,,1247,Question,diet9,,How many servings of fruit juice did you drink each day?,2005200063,2005200063,How many servings of fruit juice did you drink each day?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,dietary_survey,calc,,1248,Question,dietscore,,Diet score,2005200064,2005200064,Diet score,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,dietary_survey,text,,1249,Question,dietstartts,,Dietary Survey Start Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Dietary Survey Start Timestamp (from REDCap),,2005200573,Dietary Survey -Yes,Yes,open-source,Yes,dietary_survey,text,,1250,Question,dietcmpts,,Dietary Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Dietary Survey Completed Timestamp (from REDCap),,2005200573,Dietary Survey +Yes,Yes,open-source,Yes,dietary_survey,text,,1249,Question,dietstartts,,Dietary Survey Start Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Dietary Survey Start Timestamp (from REDCap),,2005200573,Dietary Survey +Yes,Yes,open-source,Yes,dietary_survey,text,,1250,Question,dietcmpts,,Dietary Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Dietary Survey Completed Timestamp (from REDCap),,2005200573,Dietary Survey Yes,Yes,open-source,Yes,dietary_survey,radio,diet1,2183,Answer,0,diet1_0,Less than 1 time,2005200238,2005200238,Less than 1 time,Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,dietary_survey,radio,diet1,2184,Answer,1,diet1_1,1 to 3 times a week,45876668,,1 to 3 times a week,Meas Value,LOINC,Answer,LA13830-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,dietary_survey,radio,diet1,2185,Answer,2,diet1_2,4 or more times,46238128,,4 or more times,Meas Value,LOINC,Answer,LA23713-3,S,skos:exactMatch,1,,,, @@ -285,12 +285,12 @@ Yes,Yes,open-source,No,ecg,text,,1649,Question,rtfliocmpdattim,,Date & time FLIO Yes,Yes,open-source,No,ecg,text,,1653,Question,rtaccmpdattim,,Date & time Angioplex - Cirrus 5000 performed,4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,Date & time Angioplex - Cirrus 5000 performed,,2005200601,Angioplex - Cirrus 5000 Yes,Yes,open-source,No,ecg,text,,1657,Question,rtekgcmpdattim,,Date & time Cardiology - EKG - Pagewriter TC30 Cardiograp performed,4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,Date & time Cardiology - EKG - Pagewriter TC30 Cardiograp performed,,2005200602,Cardiology - EKG - Pagewriter TC30 Cardiograp Yes,Yes,open-source,No,faq_survey,text,,1031,Question,faqcmpdat,,FAQ Survey date (date survey/form opened),4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,FAQ survey date (date survey/form opened),,2005200562,FAQ Survey -Yes,Yes,open-source,Yes,faq_survey,text,,1035,Question,faqstartts,,FAQ Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,FAQ Survey Started Timestamp (from REDCap),,2005200562,FAQ Survey -Yes,Yes,open-source,Yes,faq_survey,text,,1036,Question,faqcmpts,,FAQ Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,FAQ Survey Completed Timestamp (from REDCap),,2005200562,FAQ Survey +Yes,Yes,open-source,Yes,faq_survey,text,,1035,Question,faqstartts,,FAQ Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,FAQ Survey Started Timestamp (from REDCap),,2005200562,FAQ Survey +Yes,Yes,open-source,Yes,faq_survey,text,,1036,Question,faqcmpts,,FAQ Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,FAQ Survey Completed Timestamp (from REDCap),,2005200562,FAQ Survey Yes,Yes,open-source,No,health_survey,text,,1119,Question,mhcmpdat,,Health survey date,4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,Health survey date,,2005200568,Health Survey Yes,Yes,open-source,Yes,health_survey,radio,,1122,Question,mhoccur_mi,,Heart attack,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4329847,,4329847,Myocardial infarction Yes,Yes,open-source,Yes,health_survey,radio,,1123,Question,mhoccur_cvdot,,"Other heart issues (Examples: pacemaker, heart valve disease, open heart surgery)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,2005200627,,2005200627,"Other heart issues (Examples: pacemaker, heart valve disease, open heart surgery)" -Yes,Yes,open-source,Yes,health_survey,radio,,1124,Question,mhoccur_strk,,Stroke,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,2005200628,,2005200628,Stroke +Yes,Yes,open-source,Yes,health_survey,radio,,1124,Question,mhoccur_strk,,Stroke,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,381316,,381316,Cerebrovascular accident Yes,Yes,open-source,Yes,health_survey,radio,,1125,Question,mhoccur_circ,,"Circulation problems (Examples: arteriosclerosis, atherosclerosis, blood clots in lungs or leg veins)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,2005200015,,2005200015,Circulation problems Yes,Yes,open-source,Yes,health_survey,radio,,1126,Question,mhoccur_clsh,,High blood cholesterol,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4029305,,4029305,Hypercholesterolemia Yes,Yes,open-source,Yes,health_survey,radio,,1127,Question,mhoccur_hbp,,High blood pressure,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,316866,,316866,Hypertensive Disorder @@ -307,7 +307,7 @@ Yes,Yes,open-source,Yes,health_survey,radio,,1139,Question,mhoccur_ca,,Cancer (a Yes,Yes,open-source,Yes,health_survey,radio,,1141,Question,mhoccur_plm,,"Chronic pulmonary (lung) problems (Examples: emphysema, asthma, tuberculosis, asbestosis)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4186898,,4186898,Chronic lung disease Yes,Yes,open-source,Yes,health_survey,radio,,1142,Question,mhoccur_gi,,"Digestive problems (Examples: stomach ulcer, gastrointestinal problems, hiatal hernia)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4201745,,4201745,Disorder of digestive system Yes,Yes,open-source,Yes,health_survey,radio,,1143,Question,mhoccur_ua,,"Urinary problems (Examples: urinary tract infections, incontinence, prostate problems)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,75865,,75865,Disorder of urinary system -Yes,Yes,open-source,Yes,health_survey,radio,,1144,Question,mhoccur_rnl,,Kidney problems,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,2005200017,,2005200017,Kidney problems +Yes,Yes,open-source,Yes,health_survey,radio,,1144,Question,mhoccur_rnl,,Kidney problems,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,198124,,198124,Kidney disease Yes,Yes,open-source,Yes,health_survey,radio,,1145,Question,mhoccur_ear,,Hearing impairment,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,377889,,377889,Hearing loss Yes,Yes,open-source,Yes,health_survey,radio,,1146,Question,mhoccur_obs,,Obesity,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,433736,,433736,Obesity Yes,Yes,open-source,Yes,health_survey,radio,,1147,Question,fh_dm2pt,,Were either of your parents diagnosed with Type II Diabetes?,2005200018,2005200018,Were either of your parents diagnosed with Type II Diabetes?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, @@ -323,12 +323,12 @@ Yes,Yes,open-source,Yes,health_survey,radio,,1156,Question,mhoccur_ded,,Dry eye Yes,Yes,open-source,Yes,health_survey,radio,,1157,Question,mhoccur_yn,,"Have you been diagnosed with any conditions not listed above? (any condition, not just eyes)",2005200470,2005200470,"Have you been diagnosed with any conditions not listed above? (any condition, not just eyes)",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,,1159,Question,mhoccur_fall,,Have you fallen in the last 12 months? (a fall is defined as an event which results in a person coming to rest inadvertently on the ground or floor or other lower level),40757198,,Falls in the past year,Observation,LOINC,Survey,52552-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,health_survey,text,,1160,Question,mhoccur_fallot,,"If so, how many times in the last 12 months?",4310026,,Number of falls in last year,Observation,SNOMED,Observable Entity,391002003,S,skos:closeMatch,1,,,, -Yes,Yes,open-source,Yes,health_survey,text,,1161,Question,mhstartts,,Health Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Health Survey Started Timestamp (from REDCap),,2005200568,Health Survey -Yes,Yes,open-source,Yes,health_survey,text,,1162,Question,mhcmpts,,Heath Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Heath Survey Completed Timestamp (from REDCap),,2005200568,Health Survey +Yes,Yes,open-source,Yes,health_survey,text,,1161,Question,mhstartts,,Health Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Health Survey Started Timestamp (from REDCap),,2005200568,Health Survey +Yes,Yes,open-source,Yes,health_survey,text,,1162,Question,mhcmpts,,Heath Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Heath Survey Completed Timestamp (from REDCap),,2005200568,Health Survey Yes,Yes,open-source,No,health_survey,radio,mhoccur_mi,1894,Answer,1,mhoccur_mi_1,Yes,4329847,,Myocardial infarction,Condition,SNOMED,Disorder,22298006,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_mi,1895,Answer,0,mhoccur_mi_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,protected,Yes,current_medications,text,,1470,Question,cmname,,Medication Name,2005200481,2005200481,Medication Name,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, -Yes,Yes,protected,No,current_medications,dropdown,,1471,Question,cmroute,,"How is it taken? (ex. oral, cream, injection, etc.)",44786711,,Dose form - RxNorm RXCUI of Medication,Measurement,LOINC,Clinical Observation,74054-8,S,skos:closeMatch,0.75,,,, +Yes,Yes,protected,No,current_medications,dropdown,,1471,Question,cmroute,,"How is it taken? (ex. oral, cream, injection, etc.)",0,,,,,,,,,,No matching concept; answers populate DRUG_EXPOSURE.route_concept_id,,, Yes,Yes,protected,No,current_medications,text,,1473,Question,cmdos,,Amount taken (Dose),4162374,,Drug dose,Observation,SNOMED,Clinical Finding,398232005,S,skos:closeMatch,1,,,, Yes,Yes,protected,Yes,current_medications,dropdown,,1474,Question,cmdosu,,"Unit (Record the dose unit of the dose of concomitant medication/treatment/therapy taken (e.g., mg.)).",2005200221,2005200221,"Unit (Record the dose unit of the dose of concomitant medication/treatment/therapy taken (e.g., mg.)).",Observation,AIREADI,Clinical Observation,,S,skos:exactMatch,1,,,, Yes,Yes,protected,No,current_medications,dropdown,,1475,Question,cmdosfrq,,Frequency taken or applied:,3042548,,"Current medication, Frequency",Observation,LOINC,Claims Attachment,52810-9,S,skos:closeMatch,1,,,, @@ -337,7 +337,7 @@ Yes,Yes,open-source,No,health_survey,radio,mhoccur_mi,1896,Answer,777,mhoccur_mi Yes,Yes,open-source,Yes,health_survey,radio,mhoccur_cvdot,1897,Answer,1,mhoccur_cvdot_1,Yes,2005200627,2005200627,"Other heart issues (Examples: pacemaker, heart valve disease, open heart surgery)",Condition,AIREADI,Disorder,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_cvdot,1898,Answer,0,mhoccur_cvdot_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_cvdot,1899,Answer,777,mhoccur_cvdot_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,health_survey,radio,mhoccur_strk,1900,Answer,1,mhoccur_strk_1,Yes,2005200628,2005200628,Stroke,Condition,AIREADI,Disorder,,S,skos:exactMatch,1,,,, +Yes,Yes,open-source,No,health_survey,radio,mhoccur_strk,1900,Answer,1,mhoccur_strk_1,Yes,381316,,Cerebrovascular accident,Condition,SNOMED,Disorder,230690007,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_strk,1901,Answer,0,mhoccur_strk_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_strk,1902,Answer,777,mhoccur_strk_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,health_survey,radio,mhoccur_circ,1903,Answer,1,mhoccur_circ_1,Yes,2005200015,2005200015,"Circulation problems (Examples: arteriosclerosis, atherosclerosis, blood clots in lungs or leg veins)",Condition,AIREADI,Disorder,,S,skos:exactMatch,1,,,, @@ -389,7 +389,7 @@ Yes,Yes,open-source,No,health_survey,radio,mhoccur_gi,1948,Answer,777,mhoccur_gi Yes,Yes,open-source,No,health_survey,radio,mhoccur_ua,1949,Answer,1,mhoccur_ua_1,Yes,75865,,Disorder of urinary system,Condition,SNOMED,Disorder,128606002,S,skos:closeMatch,0.75,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_ua,1950,Answer,0,mhoccur_ua_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_ua,1951,Answer,777,mhoccur_ua_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,health_survey,radio,mhoccur_rnl,1952,Answer,1,mhoccur_rnl_1,Yes,2005200017,2005200017,Kidney problems,Condition,AIREADI,Disorder,,S,skos:exactMatch,1,,,, +Yes,Yes,open-source,No,health_survey,radio,mhoccur_rnl,1952,Answer,1,mhoccur_rnl_1,Yes,198124,,Kidney disease,Condition,SNOMED,Disorder,90708001,S,skos:closeMatch,0.75,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_rnl,1953,Answer,0,mhoccur_rnl_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_rnl,1954,Answer,777,mhoccur_rnl_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_ear,1955,Answer,1,mhoccur_ear_1,Yes,377889,,Hearing loss,Condition,SNOMED,Disorder,15188001,S,skos:exactMatch,1,,,, @@ -687,42 +687,42 @@ Yes,Yes,open-source,Yes,meds_assessment,radio,,1465,Question,cm_dcg,,"Have you t Yes,Yes,open-source,Yes,meds_assessment,radio,,1466,Question,cm_slp,,Have you taken sleeping pills in the past 2 weeks?,2005200150,2005200150,Have you taken sleeping pills in the past 2 weeks?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_asp,2949,Answer,0,cm_asp_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_asp,2950,Answer,1,cm_asp_1,Every day,45881677,,Every day,Meas Value,LOINC,Answer,LA14799-3,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,meds_assessment,radio,cm_asp,2951,Answer,2,cm_asp_2,A few days (<1 day/week),45884557,,Less than a day,Meas Value,LOINC,Answer,LA14482-6,S,skos:closeMatch,0.75,,,, +Yes,Yes,open-source,No,meds_assessment,radio,cm_asp,2951,Answer,2,cm_asp_2,A few days (<1 day/week),36210209,,Less than once a week,Meas Value,LOINC,Answer,LA27722-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_asp,2952,Answer,3,cm_asp_3,Some days (1-2 days/week),1620467,,A few days (1-2 days),Meas Value,LOINC,Answer,LA31669-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_asp,2953,Answer,4,cm_asp_4,Most days (3-4 days/week),1620862,,Most days (3-4 days),Meas Value,LOINC,Answer,LA31670-5,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_asp,2954,Answer,99,cm_asp_99,Don't know/not sure,45876636,,Don't know,Meas Value,LOINC,Answer,LA12688-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_asp,2955,Answer,777,cm_asp_777,Decline to answer,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_act,2956,Answer,0,cm_act_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_act,2957,Answer,1,cm_act_1,Every day,45881677,,Every day,Meas Value,LOINC,Answer,LA14799-3,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,meds_assessment,radio,cm_act,2958,Answer,2,cm_act_2,A few days (<1 day/week),45884557,,Less than a day,Meas Value,LOINC,Answer,LA14482-6,S,skos:closeMatch,0.75,,,, +Yes,Yes,open-source,No,meds_assessment,radio,cm_act,2958,Answer,2,cm_act_2,A few days (<1 day/week),36210209,,Less than once a week,Meas Value,LOINC,Answer,LA27722-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_act,2959,Answer,3,cm_act_3,Some days (1-2 days/week),1620467,,A few days (1-2 days),Meas Value,LOINC,Answer,LA31669-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_act,2960,Answer,4,cm_act_4,Most days (3-4 days/week),1620862,,Most days (3-4 days),Meas Value,LOINC,Answer,LA31670-5,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_act,2961,Answer,99,cm_act_99,Don't know/not sure,45876636,,Don't know,Meas Value,LOINC,Answer,LA12688-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_act,2962,Answer,777,cm_act_777,Decline to answer,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ibp,2963,Answer,0,cm_ibp_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ibp,2964,Answer,1,cm_ibp_1,Every day,45881677,,Every day,Meas Value,LOINC,Answer,LA14799-3,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,meds_assessment,radio,cm_ibp,2965,Answer,2,cm_ibp_2,A few days (<1 day/week),45884557,,Less than a day,Meas Value,LOINC,Answer,LA14482-6,S,skos:closeMatch,0.75,,,, +Yes,Yes,open-source,No,meds_assessment,radio,cm_ibp,2965,Answer,2,cm_ibp_2,A few days (<1 day/week),36210209,,Less than once a week,Meas Value,LOINC,Answer,LA27722-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ibp,2966,Answer,3,cm_ibp_3,Some days (1-2 days/week),1620467,,A few days (1-2 days),Meas Value,LOINC,Answer,LA31669-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ibp,2967,Answer,4,cm_ibp_4,Most days (3-4 days/week),1620862,,Most days (3-4 days),Meas Value,LOINC,Answer,LA31670-5,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ibp,2968,Answer,99,cm_ibp_99,Don't know/not sure,45876636,,Don't know,Meas Value,LOINC,Answer,LA12688-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ibp,2969,Answer,777,cm_ibp_777,Decline to answer,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ant,2970,Answer,0,cm_ant_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ant,2971,Answer,1,cm_ant_1,Every day,45881677,,Every day,Meas Value,LOINC,Answer,LA14799-3,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,meds_assessment,radio,cm_ant,2972,Answer,2,cm_ant_2,A few days (<1 day/week),45884557,,Less than a day,Meas Value,LOINC,Answer,LA14482-6,S,skos:closeMatch,0.75,,,, +Yes,Yes,open-source,No,meds_assessment,radio,cm_ant,2972,Answer,2,cm_ant_2,A few days (<1 day/week),36210209,,Less than once a week,Meas Value,LOINC,Answer,LA27722-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ant,2973,Answer,3,cm_ant_3,Some days (1-2 days/week),1620467,,A few days (1-2 days),Meas Value,LOINC,Answer,LA31669-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ant,2974,Answer,4,cm_ant_4,Most days (3-4 days/week),1620862,,Most days (3-4 days),Meas Value,LOINC,Answer,LA31670-5,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ant,2975,Answer,99,cm_ant_99,Don't know/not sure,45876636,,Don't know,Meas Value,LOINC,Answer,LA12688-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ant,2976,Answer,777,cm_ant_777,Decline to answer,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_dcg,2977,Answer,0,cm_dcg_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_dcg,2978,Answer,1,cm_dcg_1,Every day,45881677,,Every day,Meas Value,LOINC,Answer,LA14799-3,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,meds_assessment,radio,cm_dcg,2979,Answer,2,cm_dcg_2,A few days (<1 day/week),45884557,,Less than a day,Meas Value,LOINC,Answer,LA14482-6,S,skos:closeMatch,0.75,,,, +Yes,Yes,open-source,No,meds_assessment,radio,cm_dcg,2979,Answer,2,cm_dcg_2,A few days (<1 day/week),36210209,,Less than once a week,Meas Value,LOINC,Answer,LA27722-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_dcg,2980,Answer,3,cm_dcg_3,Some days (1-2 days/week),1620467,,A few days (1-2 days),Meas Value,LOINC,Answer,LA31669-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_dcg,2981,Answer,4,cm_dcg_4,Most days (3-4 days/week),1620862,,Most days (3-4 days),Meas Value,LOINC,Answer,LA31670-5,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_dcg,2982,Answer,99,cm_dcg_99,Don't know/not sure,45876636,,Don't know,Meas Value,LOINC,Answer,LA12688-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_dcg,2983,Answer,777,cm_dcg_777,Decline to answer,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_slp,2984,Answer,0,cm_slp_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_slp,2985,Answer,1,cm_slp_1,Every day,45881677,,Every day,Meas Value,LOINC,Answer,LA14799-3,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,meds_assessment,radio,cm_slp,2986,Answer,2,cm_slp_2,A few days (<1 day/week),45884557,,Less than a day,Meas Value,LOINC,Answer,LA14482-6,S,skos:closeMatch,0.75,,,, +Yes,Yes,open-source,No,meds_assessment,radio,cm_slp,2986,Answer,2,cm_slp_2,A few days (<1 day/week),36210209,,Less than once a week,Meas Value,LOINC,Answer,LA27722-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_slp,2987,Answer,3,cm_slp_3,Some days (1-2 days/week),1620467,,A few days (1-2 days),Meas Value,LOINC,Answer,LA31669-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_slp,2988,Answer,4,cm_slp_4,Most days (3-4 days/week),1620862,,Most days (3-4 days),Meas Value,LOINC,Answer,LA31670-5,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_slp,2989,Answer,99,cm_slp_99,Don't know/not sure,45876636,,Don't know,Meas Value,LOINC,Answer,LA12688-0,S,skos:exactMatch,1,,,, @@ -769,8 +769,8 @@ Yes,Yes,open-source,No,ophthalmic_survey,radio,,1256,Question,via3,,"Because of Yes,Yes,open-source,No,ophthalmic_survey,radio,,1257,Question,via4,,When was the last time you had your eyes examined by an eye care provider (ophthalmologist or optometrist)?,40758529,,Date of last eye examination,Observation,LOINC,Clinical Observation,55400-6,S,skos:closeMatch,0.75,,,, Yes,Yes,open-source,Yes,ophthalmic_survey,radio,,1258,Question,via5,,You have indicated that you have not seen an eye care professional in the past 12 months. What is the main reason you have not visited an eye care professional in the past 12 months?,2005200069,2005200069,You have indicated that you have not seen an eye care professional in the past 12 months. What is the main reason you have not visited an eye care professional in the past 12 months?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,ophthalmic_survey,radio,,1259,Question,via6,,When was the last time you had an eye exam in which the pupils were dilated? (This would have made you temporarily sensitive to bright light),2005200070,2005200070,When was the last time you had an eye exam in which the pupils were dilated? (This would have made you temporarily sensitive to bright light),Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,ophthalmic_survey,text,,1260,Question,viastartts,,Ophthalmic Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Ophthalmic Survey Started Timestamp (from REDCap),,2005200574,Ophthalmic Survey -Yes,Yes,open-source,Yes,ophthalmic_survey,text,,1261,Question,viacmpts,,Ophthalmic Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Ophthalmic Survey Completed Timestamp (from REDCap),,2005200574,Ophthalmic Survey +Yes,Yes,open-source,Yes,ophthalmic_survey,text,,1260,Question,viastartts,,Ophthalmic Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Ophthalmic Survey Started Timestamp (from REDCap),,2005200574,Ophthalmic Survey +Yes,Yes,open-source,Yes,ophthalmic_survey,text,,1261,Question,viacmpts,,Ophthalmic Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Ophthalmic Survey Completed Timestamp (from REDCap),,2005200574,Ophthalmic Survey Yes,Yes,open-source,No,ophthalmic_survey,radio,via1,2219,Answer,1,via1_1,No difficulty,45878948,,No difficulty,Meas Value,LOINC,Answer,LA15227-4,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,ophthalmic_survey,radio,via1,2220,Answer,2,via1_2,A little difficulty,45883842,,A little difficulty,Meas Value,LOINC,Answer,LA15725-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,ophthalmic_survey,radio,via1,2221,Answer,3,via1_3,Moderate difficulty,45879201,,Moderate difficulty,Meas Value,LOINC,Answer,LA15726-5,S,skos:exactMatch,1,,,, @@ -815,8 +815,8 @@ Yes,Yes,open-source,Yes,paid5_dm_survey,radio,,1215,Question,paid_wr,,Worrying a Yes,Yes,open-source,Yes,paid5_dm_survey,radio,,1216,Question,paid_eng,,Feeling that diabetes is taking up too much of your mental and physical energy every day,2005200047,2005200047,Feeling that diabetes is taking up too much of your mental and physical energy every day,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,paid5_dm_survey,radio,,1217,Question,paid_cml,,Coping with complications of diabetes,2005200048,2005200048,Coping with complications of diabetes,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,paid5_dm_survey,calc,,1218,Question,paidscore,,PAID score,2005200049,2005200049,PAID score,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,paid5_dm_survey,text,,1219,Question,paidstartts,,PAID-5 DM Survey Start Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,PAID-5 DM Survey Start Timestamp (from REDCap),,2005200571,PAID-5 DM Survey -Yes,Yes,open-source,Yes,paid5_dm_survey,text,,1220,Question,paidcmpts,,PAID-5 DM Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,PAID-5 DM Survey Completed Timestamp (from REDCap),,2005200571,PAID-5 DM Survey +Yes,Yes,open-source,Yes,paid5_dm_survey,text,,1219,Question,paidstartts,,PAID-5 DM Survey Start Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,PAID-5 DM Survey Start Timestamp (from REDCap),,2005200571,PAID-5 DM Survey +Yes,Yes,open-source,Yes,paid5_dm_survey,text,,1220,Question,paidcmpts,,PAID-5 DM Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,PAID-5 DM Survey Completed Timestamp (from REDCap),,2005200571,PAID-5 DM Survey Yes,Yes,open-source,Yes,paid5_dm_survey,radio,paid_scrd,2118,Answer,0,paid_scrd_0,Not a problem,2005200213,2005200213,Not a problem,Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,paid5_dm_survey,radio,paid_scrd,2119,Answer,1,paid_scrd_1,Minor problem,2005200214,2005200214,Minor problem,Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,paid5_dm_survey,radio,paid_scrd,2120,Answer,2,paid_scrd_2,Moderate problem,2005200215,2005200215,Moderate problem,Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, @@ -864,14 +864,14 @@ Yes,Yes,open-source,No,physical_assessment,text,,1490,Question,pulse_vsorres,,He Yes,Yes,open-source,No,physical_assessment,text,,1491,Question,bp2_sysbp_vsorres,,Systolic (mmHg),3004249,,Systolic blood pressure,Measurement,LOINC,Clinical Observation,8480-6,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,physical_assessment,text,,1492,Question,bp2_diabp_vsorres,,Diastolic (mmHg),3012888,,Diastolic blood pressure,Measurement,LOINC,Clinical Observation,8462-4,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,physical_assessment,text,,1493,Question,pulse_vsorres_2,,Heart Rate (bpm),3027018,,Heart rate,Measurement,LOINC,Clinical Observation,8867-4,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,physical_assessment,yesno,paate_6hr,,Answer,1,paate_6hr_1,Yes,44792839,,Non fasting,Observation,SNOMED,Clinical Finding,368441000000106,S,skos:exactMatch,1, 6 hours | 4048382,,4048382,6 hours -Yes,Yes,open-source,No,physical_assessment,yesno,paate_6hr,,Answer,0,paate_6hr_0,No,4060364,,Fasting,Observation,SNOMED,Clinical Finding,16985007,S,skos:exactMatch,1, 6 hours | 4048382,,4048382,6 hours +Yes,Yes,open-source,No,physical_assessment,yesno,paate_6hr,,Answer,1,paate_6hr_1,Yes,44792839,,Non fasting,Observation,SNOMED,Clinical Finding,368441000000106,S,skos:exactMatch,1,6 hours | 4048382,,4048382,6 hours +Yes,Yes,open-source,No,physical_assessment,yesno,paate_6hr,,Answer,0,paate_6hr_0,No,4060364,,Fasting,Observation,SNOMED,Clinical Finding,16985007,S,skos:exactMatch,1,6 hours | 4048382,,4048382,6 hours Yes,Yes,open-source,Yes,physical_assessment,yesno,,,Question,paate_6hr,,"Have you had anything to eat or drink in the last six hours, including coffee or tea with milk or sugar or any other drink other than water?",2005200629,2005200629,"Have you had anything to eat or drink in the last six hours, including coffee or tea with milk or sugar or any other drink other than water?",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,physical_assessment,yesno,paate_6hr,,Answer,1,paate_6hr_1,Yes,45877994,,Yes,Meas Value,LOINC,Answer,LA33-6,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,physical_assessment,yesno,paate_6hr,,Answer,0,paate_6hr_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,preconsent_survey,text,,1065,Question,preconcmpdat,,Pre-consent survey/form date (date survey/form opened),4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,Pre-consent survey/form date (date survey/form opened),,2005200564,Pre-consent Survey -Yes,Yes,open-source,Yes,preconsent_survey,text,,1069,Question,preconstartts,,Pre-consent Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Pre-consent Survey Started Timestamp (from REDCap),,2005200564,Pre-consent Survey -Yes,Yes,open-source,Yes,preconsent_survey,text,,1070,Question,preconcmpts,,Pre-consent Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Pre-consent Survey Completed Timestamp (from REDCap),,2005200564,Pre-consent Survey +Yes,Yes,open-source,Yes,preconsent_survey,text,,1069,Question,preconstartts,,Pre-consent Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Pre-consent Survey Started Timestamp (from REDCap),,2005200564,Pre-consent Survey +Yes,Yes,open-source,Yes,preconsent_survey,text,,1070,Question,preconcmpts,,Pre-consent Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Pre-consent Survey Completed Timestamp (from REDCap),,2005200564,Pre-consent Survey Yes,Yes,open-source,No,px_food_insecurity_survey,text,,1313,Question,pxsficmpdat,,PhenX Food Insecurity survey date,4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,PhenX Food Insecurity survey date,,2005200584,PhenX Food Insecurity Survey Yes,Yes,open-source,No,px_food_insecurity_survey,radio,,1316,Question,pxfi1,,"The first statement is, ""The food that (I/we) bought just didn't last, and (I/we) didn't have money to get more."" Was that often, sometimes, or never true for (you/your household) in the last 12 months?",36306143,,Within the past 12 months the food we bought just didn't last and we didn't have money to get more [U.S. FSS],Observation,LOINC,Survey,88123-5,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_food_insecurity_survey,radio,,1317,Question,pxfi2,,"""(I/we) couldn't afford to eat balanced meals."" Was that often, sometimes, or never true for (you/your household) in the last 12 months?",36660487,,"In the last 12 months, we couldn't afford to eat balanced meals [U.S. FSS]",Observation,LOINC,Survey,95248-1,S,skos:exactMatch,1,,,, @@ -879,8 +879,8 @@ Yes,Yes,open-source,No,px_food_insecurity_survey,radio,,1318,Question,pxfi3,,"In Yes,Yes,open-source,No,px_food_insecurity_survey,radio,,1319,Question,food_insecurity_change_diet_frequency,,"How often did this happen - almost every month, some months but not every month, or in only 1 or 2 months?",36660018,,"In the last 12 months, how often did you cut the size of your meals or skip meals because there wasn't enough money for food [U.S. FSS]",Observation,LOINC,Survey,95250-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,px_food_insecurity_survey,radio,,1320,Question,pxfi4,,"In the last 12 months, did you ever eat less than you felt you should because there wasn't enough money to buy food?",36659800,,"In the last 12 months, did you ever eat less than you felt you should because there wasn't enough money for food [U.S. FSS]",Observation,LOINC,Survey,95251-5,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_food_insecurity_survey,radio,,1321,Question,pxfi5,,"In the last 12 months, were you ever hungry but didn't eat because you couldn't afford enough food?",36660509,,"In the last 12 months, were you ever hungry but didn't eat because there wasn't enough money for food [U.S. FSS]",Observation,LOINC,Survey,95252-3,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,px_food_insecurity_survey,text,,1322,Question,pxfistartts,,PhenX Food Insecurity Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:exactMatch,1,PhenX Food Insecurity Survey Started Timestamp (from REDCap),,2005200584,PhenX Food Insecurity Survey -Yes,Yes,open-source,Yes,px_food_insecurity_survey,text,,1323,Question,pxsficmpts,,PhenX Food Insecurity Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:exactMatch,1,PhenX Food Insecurity Survey Completed Timestamp (from REDCap),,2005200584,PhenX Food Insecurity Survey +Yes,Yes,open-source,Yes,px_food_insecurity_survey,text,,1322,Question,pxfistartts,,PhenX Food Insecurity Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:exactMatch,1,PhenX Food Insecurity Survey Started Timestamp (from REDCap),,2005200584,PhenX Food Insecurity Survey +Yes,Yes,open-source,Yes,px_food_insecurity_survey,text,,1323,Question,pxsficmpts,,PhenX Food Insecurity Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:exactMatch,1,PhenX Food Insecurity Survey Completed Timestamp (from REDCap),,2005200584,PhenX Food Insecurity Survey Yes,Yes,open-source,Yes,px_food_insecurity_survey,text,,1324,Question,px270301_metadata,,PhenX MetaData,2005200102,2005200102,PhenX MetaData,Observation,AIREADI,Survey,,S,skos:exactMatch,1,PhenX Food Insecurity MetaData,,2005200584,PhenX Food Insecurity Survey Yes,Yes,open-source,No,px_food_insecurity_survey,radio,pxfi1,2473,Answer,1,pxfi1_1,Often true,36309834,,Often true,Meas Value,LOINC,Answer,LA28397-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_food_insecurity_survey,radio,pxfi1,2474,Answer,2,pxfi1_2,Sometimes true,45877955,,Sometimes true,Meas Value,LOINC,Answer,LA6729-3,S,skos:exactMatch,1,,,, @@ -990,8 +990,8 @@ Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne9,2552,Answe Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne9,2553,Answer,2,pxne9_2,Somewhat disagree,45879539,,Somewhat disagree,Meas Value,LOINC,Answer,LA15234-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne9,2554,Answer,3,pxne9_3,Somewhat agree,45884684,,Somewhat agree,Meas Value,LOINC,Answer,LA15235-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne9,2555,Answer,4,pxne9_4,Strongly agree,45879208,,Strongly agree,Meas Value,LOINC,Answer,LA15237-3,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne9_,2556,Answer,555,pxne9__555,Don't know/Not sure,45876636,,Don't know,Meas Value,LOINC,Answer,LA12688-0,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne9_,2557,Answer,777,pxne9__777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, +Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne9,2556,Answer,555,pxne9_555,Don't know/Not sure,45876636,,Don't know,Meas Value,LOINC,Answer,LA12688-0,S,skos:exactMatch,1,,,, +Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne9,2557,Answer,777,pxne9_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne10,2558,Answer,1,pxne10_1,Strongly disagree,45882953,,Strongly disagree,Meas Value,LOINC,Answer,LA15236-5,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne10,2559,Answer,2,pxne10_2,Somewhat disagree,45879539,,Somewhat disagree,Meas Value,LOINC,Answer,LA15234-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne10,2560,Answer,3,pxne10_3,Somewhat agree,45884684,,Somewhat agree,Meas Value,LOINC,Answer,LA15235-7,S,skos:exactMatch,1,,,, @@ -1094,8 +1094,8 @@ Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,radio,,1401,Quest Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,radio,,1402,Question,pxrd52,,In the Past Year?,2005200541,2005200541,How different would your life be now if you HAD NOT BEEN treated in a racist and unfair way? In the Past Year?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,radio,,1403,Question,pxrd53,,In your entire life?,2005200542,2005200542,How different would your life be now if you HAD NOT BEEN treated in a racist and unfair way? In your entire life?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,radio,,1404,Question,pxrd54,,"On a scale of 1-6, how stressful was this for you? 1 = Not at all stressful; 6 = Extremely stressful",2005200543,2005200543,"How different would your life be now if you HAD NOT BEEN treated in a racist and unfair way? On a scale of 1-6, how stressful was this for you? 1 = Not at all stressful; 6 = Extremely stressful",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,text,,1405,Question,pxrdcmpts,,PhenX Racial/Ethnic Discrimination Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:exactMatch,1,PhenX Racial/Ethnic Discrimination Survey Completed Timestamp (from REDCap),,2005200586,PhenX Racial/Ethnic Survey -Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,text,,1406,Question,pxrdstartts,,PhenX Racial/Ethnic Discrimination Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:exactMatch,1,PhenX Racial/Ethnic Discrimination Survey Started Timestamp (from REDCap),,2005200586,PhenX Racial/Ethnic Survey +Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,text,,1405,Question,pxrdcmpts,,PhenX Racial/Ethnic Discrimination Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:exactMatch,1,PhenX Racial/Ethnic Discrimination Survey Completed Timestamp (from REDCap),,2005200586,PhenX Racial/Ethnic Survey +Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,text,,1406,Question,pxrdstartts,,PhenX Racial/Ethnic Discrimination Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:exactMatch,1,PhenX Racial/Ethnic Discrimination Survey Started Timestamp (from REDCap),,2005200586,PhenX Racial/Ethnic Survey Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,text,,1407,Question,px281501_metadata,,PhenX Racial/Ethnic MetaData,2005200102,2005200102,PhenX MetaData,Observation,AIREADI,Survey,,S,skos:exactMatch,1,PhenX Racial/Ethnic MetaData,,2005200586,PhenX Racial/Ethnic Survey Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd1,2605,Answer,1,pxrd1_1,Never,45876662,,Never,Meas Value,LOINC,Answer,LA6270-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd1,2606,Answer,2,pxrd1_2,Once in a while,45879593,,Occasionally,Meas Value,LOINC,Answer,LA6483-7,S,skos:closeMatch,1,,,, @@ -1145,9 +1145,9 @@ Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd8,2649,A Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd8,2650,Answer,5,pxrd8_5,Most of the time,45879199,,Most of the time,Meas Value,LOINC,Answer,LA14734-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd8,2651,Answer,6,pxrd8_6,Almost all the time,45883838,,All the time,Meas Value,LOINC,Answer,LA14726-6,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd8,2652,Answer,777,pxrd8_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd9,2653,Answer,1,pxrd9_1,1 - Not at all stressful,36210226,,Not at all bothersome,Meas Value,LOINC,Answer,LA24969-0,S,skos:closeMatch,1,,,, -Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd9,2654,Answer,6,pxrd9_6,6 - Extremely stressful,36210124,,Extremely bothersome,Meas Value,LOINC,Answer,LA27766-7,S,skos:closeMatch,1,,,, -Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd9,2655,Answer,777,pxrd9_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, +Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pdrx9,2653,Answer,1,pdrx9_1,1 - Not at all stressful,36210226,,Not at all bothersome,Meas Value,LOINC,Answer,LA24969-0,S,skos:closeMatch,1,,,, +Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pdrx9,2654,Answer,6,pdrx9_6,6 - Extremely stressful,36210124,,Extremely bothersome,Meas Value,LOINC,Answer,LA27766-7,S,skos:closeMatch,1,,,, +Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pdrx9,2655,Answer,777,pdrx9_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd10,2656,Answer,1,pxrd10_1,Never,45876662,,Never,Meas Value,LOINC,Answer,LA6270-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd10,2657,Answer,2,pxrd10_2,Once in a while,45879593,,Occasionally,Meas Value,LOINC,Answer,LA6483-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd10,2658,Answer,3,pxrd10_3,Sometimes,45882528,,Sometimes,Meas Value,LOINC,Answer,LA10082-8,S,skos:exactMatch,1,,,, @@ -1441,8 +1441,8 @@ Yes,Yes,open-source,No,px_sdoh_combined_survey,radio,,1299,Question,pxdhc4,,A do Yes,Yes,open-source,No,px_sdoh_combined_survey,radio,,1300,Question,pxdhc5,,A doctor or nurse acts as if he or she is afraid of you.,40192423,,How often does a doctor or nurse act as if he or she is afraid of you when you go to a doctor's office or other health care provider?,Observation,PPI,Question,sdoh_dms_5,S,skos:closeMatch,0.75,,,, Yes,Yes,open-source,No,px_sdoh_combined_survey,radio,,1301,Question,pxdhc6,,A doctor or nurse acts as if he or she is better than you.,40192383,,How often does a doctor or nurse act as if he or she is better than you when you go to a doctor's office or other health care provider?,Observation,PPI,Question,sdoh_dms_7,S,skos:closeMatch,0.75,,,, Yes,Yes,open-source,No,px_sdoh_combined_survey,radio,,1302,Question,pxdhc7,,You feel like a doctor or nurse is not listening to what you were saying,40192394,,How often do you feel like a doctor or nurse is not listening to what you were saying. when you go to a doctor's office or other health care provider?,Observation,PPI,Question,sdoh_dms_6,S,skos:closeMatch,0.75,,,, -Yes,Yes,open-source,Yes,px_sdoh_combined_survey,text,,1303,Question,pxsdohstartts,,PhenX SDOH Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,PhenX SDOH Survey Started Timestamp (from REDCap),,2005200575,PhenX SDOH Survey -Yes,Yes,open-source,Yes,px_sdoh_combined_survey,text,,1304,Question,pxsdohcmpts,,PhenX SDOH Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,PhenX SDOH Survey Completed Timestamp (from REDCap),,2005200575,PhenX SDOH Survey +Yes,Yes,open-source,Yes,px_sdoh_combined_survey,text,,1303,Question,pxsdohstartts,,PhenX SDOH Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,PhenX SDOH Survey Started Timestamp (from REDCap),,2005200575,PhenX SDOH Survey +Yes,Yes,open-source,Yes,px_sdoh_combined_survey,text,,1304,Question,pxsdohcmpts,,PhenX SDOH Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,PhenX SDOH Survey Completed Timestamp (from REDCap),,2005200575,PhenX SDOH Survey Yes,Yes,open-source,Yes,px_sdoh_combined_survey,text,,1305,Question,px270201_metadata,,PhenX English Proficiency MetaData,2005200102,2005200102,PhenX MetaData,Observation,AIREADI,Survey,,S,skos:exactMatch,1,PhenX English Proficiency MetaData,,2005200576,PhenX English Proficiency Survey Yes,Yes,open-source,Yes,px_sdoh_combined_survey,text,,1306,Question,px011002_metadata,,PhenX Education Attainment MetaData,2005200102,2005200102,PhenX MetaData,Observation,AIREADI,Survey,,S,skos:exactMatch,1,PhenX Education Attainment MetaData,,2005200577,PhenX Education Attainment Survey Yes,Yes,open-source,Yes,px_sdoh_combined_survey,text,,1307,Question,px280301_metadata,,PhenX Job Security MetaData,2005200102,2005200102,PhenX MetaData,Observation,AIREADI,Survey,,S,skos:exactMatch,1,PhenX Job Security MetaData,,2005200578,PhenX Job Security Survey @@ -1671,9 +1671,9 @@ Yes,Yes,open-source,No,px_sdoh_combined_survey,radio,pxdhc7,2472,Answer,777,pxdh Yes,Yes,protected,No,current_medications,dropdown,cmroute,2997,Answer,5,cmroute_5,Nasal,4262914,,Nasal,Route,SNOMED,Qualifier Value,46713006,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,recruitment_survey,text,,1025,Question,reccmpdat,,Recruitment survey date (date survey/form opened),4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,,,2005200561,Recruitment Survey Yes,Yes,protected,No,current_medications,dropdown,cmroute,2998,Answer,6,cmroute_6,Oral,4132161,,Oral,Route,SNOMED,Qualifier Value,26643006,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,recruitment_survey,text,,1029,Question,recstartts,,Recruitment Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Recruitment Survey Started Timestamp (from REDCap),,2005200561,Recruitment Survey +Yes,Yes,open-source,Yes,recruitment_survey,text,,1029,Question,recstartts,,Recruitment Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Recruitment Survey Started Timestamp (from REDCap),,2005200561,Recruitment Survey Yes,Yes,protected,No,current_medications,dropdown,cmroute,2999,Answer,7,cmroute_7,Rectal,4290759,,Rectal,Route,SNOMED,Qualifier Value,37161004,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,recruitment_survey,text,,1030,Question,reccmpts,,Recruitment Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Recruitment Survey Completed Timestamp (from REDCap),,2005200561,Recruitment Survey +Yes,Yes,open-source,Yes,recruitment_survey,text,,1030,Question,reccmpts,,Recruitment Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Recruitment Survey Completed Timestamp (from REDCap),,2005200561,Recruitment Survey Yes,Yes,protected,No,current_medications,dropdown,cmroute,3000,Answer,8,cmroute_8,Inhalation,40486069,,Respiratory tract,Route,SNOMED,Qualifier Value,447694001,S,skos:closeMatch,1,,,, Yes,Yes,open-source,Yes,retinal_imaging_v2,yesno,,,Question,rtop_odd,,OptoMed-Disc centered-CFP,2005200289,2005200289,OptoMed-Disc centered-CFP,Observation,AIREADI-Vision,Observable Entity,,S,skos:exactMatch,1,right eye|45876703,,45876703,Right eye Yes,Yes,protected,No,current_medications,dropdown,cmroute,3001,Answer,9,cmroute_9,Subcutaneous,4142048,,Subcutaneous,Route,SNOMED,Qualifier Value,34206005,S,skos:exactMatch,1,,,, @@ -1853,8 +1853,8 @@ Yes,Yes,open-source,Yes,screening_survey,radio,,1046,Question,cmtrt_a1c,,"Do you Yes,Yes,open-source,Yes,screening_survey,yesno,,1047,Question,cmtrt_insln,,Do you inject insulin to control your blood glucose levels?,2005200549,2005200549,Do you inject insulin to control your blood glucose levels?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,screening_survey,yesno,,1048,Question,cmtrt_glcs,,"Do you use other injections to control your blood glucose levels? Examples: Victoza, Ozempic, Symlin, Tanzeum, and Trulicity",2005200550,2005200550,"Do you use other injections to control your blood glucose levels? Examples: Victoza, Ozempic, Symlin, Tanzeum, and Trulicity",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,screening_survey,yesno,,1049,Question,cmtrt_lfst,,"Do you use lifestyle changes to control your A1C and blood glucose levels? Examples: regular exercise, avoiding sugary foods and beverages, eating a balanced diet with lots of vegetables, sticking to a consistent eating schedule",2005200004,2005200004,"Do you use lifestyle changes to control your A1C and blood glucose levels? Examples: regular exercise, avoiding sugary foods and beverages, eating a balanced diet with lots of vegetables, sticking to a consistent eating schedule",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,screening_survey,text,,1060,Question,scrstartts,,Screening Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Screening Survey Started Timestamp (from REDCap),,2005200563,Screening Survey -Yes,Yes,open-source,Yes,screening_survey,text,,1061,Question,scrcmpts,,Screening Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Screening Survey Completed Timestamp (from REDCap),,2005200563,Screening Survey +Yes,Yes,open-source,Yes,screening_survey,text,,1060,Question,scrstartts,,Screening Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Screening Survey Started Timestamp (from REDCap),,2005200563,Screening Survey +Yes,Yes,open-source,Yes,screening_survey,text,,1061,Question,scrcmpts,,Screening Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Screening Survey Completed Timestamp (from REDCap),,2005200563,Screening Survey Yes,Yes,open-source,No,screening_survey,radio,cmtrt_a1c,1790,Answer,1,cmtrt_a1c_1,Yes,4016042,,Diabetic on oral treatment,Observation,SNOMED,Clinical Finding,170746002,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,screening_survey,radio,cmtrt_a1c,1791,Answer,0,cmtrt_a1c_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,screening_survey,yes,mhterm_dm1,,Answer,1,mhterm_dm1_1,Yes,45877994,,Yes,Meas Value,LOINC,Answer,LA33-6,S,skos:exactMatch,1,,,, @@ -1906,8 +1906,8 @@ Yes,Yes,open-source,Yes,substance_use_survey,radio,,1188,Question,sumrjcdur,,Do Yes,Yes,open-source,Yes,substance_use_survey,checkbox,,1189,Question,sumrjtrt,,In what form do you usually use marijuana? (check all that apply),2005200037,2005200037,In what form do you usually use marijuana? (check all that apply),Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,substance_use_survey,dropdown,,1190,Question,sumrjceddur,,How many total years have you used marijuana?,2005200038,2005200038,How many total years have you used marijuana?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,substance_use_survey,dropdown,,1191,Question,sumrjfr,,"When you used marijuana, approximately how many days in a typical week would you use it?",2005200039,2005200039,"When you used marijuana, approximately how many days in a typical week would you use it?",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,substance_use_survey,text,,1192,Question,sustartts,,Substance Use Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Substance Use Survey Started Timestamp (from REDCap),,2005200569,Substance Use Survey -Yes,Yes,open-source,Yes,substance_use_survey,text,,1193,Question,sucmpts,,Substance Use Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Substance Use Survey Completed Timestamp (from REDCap),,2005200569,Substance Use Survey +Yes,Yes,open-source,Yes,substance_use_survey,text,,1192,Question,sustartts,,Substance Use Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Substance Use Survey Started Timestamp (from REDCap),,2005200569,Substance Use Survey +Yes,Yes,open-source,Yes,substance_use_survey,text,,1193,Question,sucmpts,,Substance Use Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Substance Use Survey Completed Timestamp (from REDCap),,2005200569,Substance Use Survey Yes,Yes,open-source,No,substance_use_survey,radio,susmkncf,1999,Answer,1,susmkncf_1,Yes,40766306,,Smoked at least 100 cigarettes in entire life,Observation,LOINC,Clinical Observation,63581-3,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,substance_use_survey,radio,susmkncf,2000,Answer,0,susmkncf_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,substance_use_survey,radio,susmkncf,2001,Answer,777,susmkncf_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, @@ -1919,7 +1919,7 @@ Yes,Yes,open-source,No,substance_use_survey,radio,susmkcdur,2006,Answer,777,susm Yes,Yes,open-source,No,substance_use_survey,dropdown,susmkstoage,2007,Answer,98,susmkstoage_98,More than 60 years old,45882614,,60 or older,Meas Value,LOINC,Answer,LA16058-2,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,substance_use_survey,dropdown,susmkstoage,2008,Answer,999,susmkstoage_999,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,substance_use_survey,dropdown,susmkdosfr,2009,Answer,21,susmkdosfr_21,21-30 (up to 1.5 packs),45881687,,21-30 (2 points),Meas Value,LOINC,Answer,LA15914-7,S,skos:closeMatch,1,,,, -Yes,Yes,open-source,No,substance_use_survey,dropdown,susmkdosfr,2010,Answer,31,susmkdosfr_31,31-40 (up to 2 packs),45884478,,31 or more (3 points),Meas Value,LOINC,Answer,LA15915-4,S,skos:closeMatch,1,,,, +Yes,Yes,open-source,Yes,substance_use_survey,dropdown,susmkdosfr,2010,Answer,31,susmkdosfr_31,31-40 (up to 2 packs),2005200636,2005200636,31-40 (up to 2 packs),Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,substance_use_survey,dropdown,susmkdosfr,2011,Answer,41,susmkdosfr_41,41-50 (up to 2.5 packs),2005200194,2005200194,41-50 (up to 2.5 packs),Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,substance_use_survey,dropdown,susmkdosfr,2012,Answer,51,susmkdosfr_51,More than 50 (3 or more packs),2005200195,2005200195,More than 50 (3 or more packs),Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,substance_use_survey,dropdown,susmkdosfr,2013,Answer,999,susmkdosfr_999,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, diff --git a/redCapDataDictionaryWithExtension/value-set-mapping-common/_ai_readi_redcap_value_set_mapping_map2omop_open_source_public_version.csv b/redCapDataDictionaryWithExtension/value-set-mapping-common/_ai_readi_redcap_value_set_mapping_map2omop_open_source_public_version.csv index 0916a7f..cbc3c16 100644 --- a/redCapDataDictionaryWithExtension/value-set-mapping-common/_ai_readi_redcap_value_set_mapping_map2omop_open_source_public_version.csv +++ b/redCapDataDictionaryWithExtension/value-set-mapping-common/_ai_readi_redcap_value_set_mapping_map2omop_open_source_public_version.csv @@ -43,8 +43,8 @@ Yes,Yes,open-source,No,cesd10_survey,radio,,1204,Question,ces8,,I was happy,1761 Yes,Yes,open-source,No,cesd10_survey,radio,,1205,Question,ces9,,I felt lonely,1761319,,Feeling lonely,Observation,LOINC,Survey,100780-6,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,cesd10_survey,radio,,1206,Question,ces10,,"I could not ""get going""",1761073,,Lack of energy,Observation,LOINC,Survey,100786-3,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,cesd10_survey,calc,,1207,Question,cestl,,CESD-10 Score,1761347,,Total Score CES-D,Observation,LOINC,Survey,100787-1,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,cesd10_survey,text,,1208,Question,cesstartts,,CES-D-10 Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,CES-D-10 Survey Started Timestamp (from REDCap),,2005200570,CES-D-10 Survey -Yes,Yes,open-source,Yes,cesd10_survey,text,,1209,Question,cescmpts,,CES-D-10 Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,CES-D-10 Survey Completed Timestamp (from REDCap),,2005200570,CES-D-10 Survey +Yes,Yes,open-source,Yes,cesd10_survey,text,,1208,Question,cesstartts,,CES-D-10 Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,CES-D-10 Survey Started Timestamp (from REDCap),,2005200570,CES-D-10 Survey +Yes,Yes,open-source,Yes,cesd10_survey,text,,1209,Question,cescmpts,,CES-D-10 Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,CES-D-10 Survey Completed Timestamp (from REDCap),,2005200570,CES-D-10 Survey Yes,Yes,open-source,Yes,cesd10_survey,radio,ces1,2078,Answer,0,ces1_0,Rarely or none of the time (< 1 day),2005200141,2005200141,Rarely or none of the time (< 1 day),Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,cesd10_survey,radio,ces1,2079,Answer,1,ces1_1,Some or a little of the time (1-2 days),2005200142,2005200142,Some or a little of the time (1-2 days),Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,cesd10_survey,radio,ces1,2080,Answer,2,ces1_2,Occasionally or a moderate amount of time (3-4 days),2005200143,2005200143,Occasionally or a moderate amount of time (3-4 days),Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, @@ -88,14 +88,14 @@ Yes,Yes,open-source,Yes,cesd10_survey,radio,ces10,2117,Answer,3,ces10_3,All of t Yes,Yes,open-source,No,consent_survey,text,,1071,Question,icf_dat,,Consent survey/form date (date survey/form opened),4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,Consent survey/form date (date survey/form opened),,2005200565,Consent Survey Yes,Yes,open-source,No,consent_survey,checkbox,,1074,Question,c184390,,Paper consent obtained,3018196,,Informed consent obtained,Observation,LOINC,Clinical Observation,19826-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,consent_survey,text,,1075,Question,c184390_dat,,Date paper consent completed,4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,Date paper consent completed,,2005200587,Paper Consent Completed -Yes,Yes,open-source,Yes,consent_survey,text,,1081,Question,icfsvyts,,Consent Survey Start Timestamp,2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Consent Survey Start Timestamp,,2005200565,Consent Survey -Yes,Yes,open-source,Yes,consent_survey,text,,1082,Question,icfcmpts,,Consent Survey Completed Timestamp,2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Consent Survey Completed Timestamp,,2005200565,Consent Survey +Yes,Yes,open-source,Yes,consent_survey,text,,1081,Question,icfsvyts,,Consent Survey Start Timestamp,2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Consent Survey Start Timestamp,,2005200565,Consent Survey +Yes,Yes,open-source,Yes,consent_survey,text,,1082,Question,icfcmpts,,Consent Survey Completed Timestamp,2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Consent Survey Completed Timestamp,,2005200565,Consent Survey Yes,Yes,open-source,No,demographics_survey,text,,1106,Question,dmgcmpdat,,Demographic survey date (date survey/form opened),4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,Demographic survey date (date survey/form opened),,2005200567,Demographic Survey Yes,Yes,open-source,No,demographics_survey,text,,1111,Question,brthyy,,Year (e.g. 1967),0,,No matching concept,,,,,,,,,,, Yes,Yes,open-source,No,demographics_survey,text,,1112,Question,cage,,Age (in years),3022304,,Age,Observation,LOINC,Clinical Observation,30525-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,demographics_survey,radio,,1113,Question,cl_maristat,,Marital Status,4053609,,Marital status,Observation,SNOMED,Observable Entity,125680007,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,demographics_survey,text,,1117,Question,dmgstartts,,Demographics Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Demographics Survey Started Timestamp (from REDCap),,2005200567,Demographic Survey -Yes,Yes,open-source,Yes,demographics_survey,text,,1118,Question,dmgcmpts,,Demograhics Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Demograhics Survey Completed Timestamp (from REDCap),,2005200567,Demographic Survey +Yes,Yes,open-source,Yes,demographics_survey,text,,1117,Question,dmgstartts,,Demographics Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Demographics Survey Started Timestamp (from REDCap),,2005200567,Demographic Survey +Yes,Yes,open-source,Yes,demographics_survey,text,,1118,Question,dmgcmpts,,Demograhics Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Demograhics Survey Completed Timestamp (from REDCap),,2005200567,Demographic Survey Yes,Yes,open-source,No,demographics_survey,radio,cl_maristat,1881,Answer,C51773,cl_maristat_C51773,Married,45876756,,Married,Meas Value,LOINC,Answer,LA48-4,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,demographics_survey,radio,cl_maristat,1882,Answer,C51774,cl_maristat_C51774,Single,45879879,,Single,Meas Value,LOINC,Answer,LA17717-2,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,demographics_survey,radio,cl_maristat,1883,Answer,C51776,cl_maristat_C51776,Divorced,45883375,,Divorced,Meas Value,LOINC,Answer,LA51-8,S,skos:exactMatch,1,,,, @@ -134,8 +134,8 @@ Yes,Yes,open-source,No,diabetes_survey,radio,,1230,Question,dmlfrveg,,"In a typi Yes,Yes,open-source,Yes,diabetes_survey,radio,,1231,Question,dmledu,,"How often would you say that you engage in diabetes health education? (Examples: consulting with a dietician, attending support groups, reading books on diabetes, using diabetes-focused websites, watching TV shows on health, or using health-focused apps on your phone or tablet)",2005200307,2005200307,"How often would you say that you engage in diabetes health education? (Examples: consulting with a dietician, attending support groups, reading books on diabetes, using diabetes-focused websites, watching TV shows on health, or using health-focused apps on your phone or tablet)",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,diabetes_survey,radio,,1232,Question,dmlfeet,,How often do you inspect your feet?,2005200308,2005200308,How often do you inspect your feet?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,diabetes_survey,radio,,1233,Question,dmlmd,,Which of the following options best describes you with respect to physician care and medications?,2005200309,2005200309,Which of the following options best describes you with respect to physician care and medications?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,diabetes_survey,text,,1234,Question,dmlstartts,,Diabetes Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Diabetes Survey Started Timestamp (from REDCap),,2005200572,Diabetes Survey -Yes,Yes,open-source,Yes,diabetes_survey,text,,1235,Question,dmlcmpts,,Diabetes Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Diabetes Survey Completed Timestamp (from REDCap),,2005200572,Diabetes Survey +Yes,Yes,open-source,Yes,diabetes_survey,text,,1234,Question,dmlstartts,,Diabetes Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Diabetes Survey Started Timestamp (from REDCap),,2005200572,Diabetes Survey +Yes,Yes,open-source,Yes,diabetes_survey,text,,1235,Question,dmlcmpts,,Diabetes Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Diabetes Survey Completed Timestamp (from REDCap),,2005200572,Diabetes Survey Yes,Yes,open-source,Yes,diabetes_survey,radio,dmlvex,2143,Answer,10,dmlvex_10,At least 30 minutes daily 3 or more days a week,2005200312,2005200312,At least 30 minutes daily 3 or more days a week,Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,diabetes_survey,radio,dmlvex,2144,Answer,5,dmlvex_5,Less than 30 minutes daily less than 3 days a week,2005200313,2005200313,Less than 30 minutes daily less than 3 days a week,Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,diabetes_survey,radio,dmlvex,2145,Answer,0,dmlvex_0,Rarely or none,45883771,,Rarely or never,Meas Value,LOINC,Answer,LA15665-5,S,skos:exactMatch,1,,,, @@ -187,8 +187,8 @@ Yes,Yes,open-source,Yes,dietary_survey,radio,,1245,Question,diet7,,How many time Yes,Yes,open-source,Yes,dietary_survey,radio,,1246,Question,diet8,,"How much margarine, butter, or meat fat do you use to season vegetables or put on potatoes, bread or corn?",2005200062,2005200062,"How much margarine, butter, or meat fat do you use to season vegetables or put on potatoes, bread or corn?",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,dietary_survey,radio,,1247,Question,diet9,,How many servings of fruit juice did you drink each day?,2005200063,2005200063,How many servings of fruit juice did you drink each day?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,dietary_survey,calc,,1248,Question,dietscore,,Diet score,2005200064,2005200064,Diet score,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,dietary_survey,text,,1249,Question,dietstartts,,Dietary Survey Start Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Dietary Survey Start Timestamp (from REDCap),,2005200573,Dietary Survey -Yes,Yes,open-source,Yes,dietary_survey,text,,1250,Question,dietcmpts,,Dietary Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Dietary Survey Completed Timestamp (from REDCap),,2005200573,Dietary Survey +Yes,Yes,open-source,Yes,dietary_survey,text,,1249,Question,dietstartts,,Dietary Survey Start Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Dietary Survey Start Timestamp (from REDCap),,2005200573,Dietary Survey +Yes,Yes,open-source,Yes,dietary_survey,text,,1250,Question,dietcmpts,,Dietary Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Dietary Survey Completed Timestamp (from REDCap),,2005200573,Dietary Survey Yes,Yes,open-source,Yes,dietary_survey,radio,diet1,2183,Answer,0,diet1_0,Less than 1 time,2005200238,2005200238,Less than 1 time,Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,dietary_survey,radio,diet1,2184,Answer,1,diet1_1,1 to 3 times a week,45876668,,1 to 3 times a week,Meas Value,LOINC,Answer,LA13830-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,dietary_survey,radio,diet1,2185,Answer,2,diet1_2,4 or more times,46238128,,4 or more times,Meas Value,LOINC,Answer,LA23713-3,S,skos:exactMatch,1,,,, @@ -268,12 +268,12 @@ Yes,Yes,open-source,No,ecg,text,,1649,Question,rtfliocmpdattim,,Date & time FLIO Yes,Yes,open-source,No,ecg,text,,1653,Question,rtaccmpdattim,,Date & time Angioplex - Cirrus 5000 performed,4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,Date & time Angioplex - Cirrus 5000 performed,,2005200601,Angioplex - Cirrus 5000 Yes,Yes,open-source,No,ecg,text,,1657,Question,rtekgcmpdattim,,Date & time Cardiology - EKG - Pagewriter TC30 Cardiograp performed,4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,Date & time Cardiology - EKG - Pagewriter TC30 Cardiograp performed,,2005200602,Cardiology - EKG - Pagewriter TC30 Cardiograp Yes,Yes,open-source,No,faq_survey,text,,1031,Question,faqcmpdat,,FAQ Survey date (date survey/form opened),4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,FAQ survey date (date survey/form opened),,2005200562,FAQ Survey -Yes,Yes,open-source,Yes,faq_survey,text,,1035,Question,faqstartts,,FAQ Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,FAQ Survey Started Timestamp (from REDCap),,2005200562,FAQ Survey -Yes,Yes,open-source,Yes,faq_survey,text,,1036,Question,faqcmpts,,FAQ Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,FAQ Survey Completed Timestamp (from REDCap),,2005200562,FAQ Survey +Yes,Yes,open-source,Yes,faq_survey,text,,1035,Question,faqstartts,,FAQ Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,FAQ Survey Started Timestamp (from REDCap),,2005200562,FAQ Survey +Yes,Yes,open-source,Yes,faq_survey,text,,1036,Question,faqcmpts,,FAQ Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,FAQ Survey Completed Timestamp (from REDCap),,2005200562,FAQ Survey Yes,Yes,open-source,No,health_survey,text,,1119,Question,mhcmpdat,,Health survey date,4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,Health survey date,,2005200568,Health Survey Yes,Yes,open-source,Yes,health_survey,radio,,1122,Question,mhoccur_mi,,Heart attack,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4329847,,4329847,Myocardial infarction Yes,Yes,open-source,Yes,health_survey,radio,,1123,Question,mhoccur_cvdot,,"Other heart issues (Examples: pacemaker, heart valve disease, open heart surgery)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,2005200627,,2005200627,"Other heart issues (Examples: pacemaker, heart valve disease, open heart surgery)" -Yes,Yes,open-source,Yes,health_survey,radio,,1124,Question,mhoccur_strk,,Stroke,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,2005200628,,2005200628,Stroke +Yes,Yes,open-source,Yes,health_survey,radio,,1124,Question,mhoccur_strk,,Stroke,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,381316,,381316,Cerebrovascular accident Yes,Yes,open-source,Yes,health_survey,radio,,1125,Question,mhoccur_circ,,"Circulation problems (Examples: arteriosclerosis, atherosclerosis, blood clots in lungs or leg veins)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,2005200015,,2005200015,Circulation problems Yes,Yes,open-source,Yes,health_survey,radio,,1126,Question,mhoccur_clsh,,High blood cholesterol,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4029305,,4029305,Hypercholesterolemia Yes,Yes,open-source,Yes,health_survey,radio,,1127,Question,mhoccur_hbp,,High blood pressure,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,316866,,316866,Hypertensive Disorder @@ -290,7 +290,7 @@ Yes,Yes,open-source,Yes,health_survey,radio,,1139,Question,mhoccur_ca,,Cancer (a Yes,Yes,open-source,Yes,health_survey,radio,,1141,Question,mhoccur_plm,,"Chronic pulmonary (lung) problems (Examples: emphysema, asthma, tuberculosis, asbestosis)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4186898,,4186898,Chronic lung disease Yes,Yes,open-source,Yes,health_survey,radio,,1142,Question,mhoccur_gi,,"Digestive problems (Examples: stomach ulcer, gastrointestinal problems, hiatal hernia)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4201745,,4201745,Disorder of digestive system Yes,Yes,open-source,Yes,health_survey,radio,,1143,Question,mhoccur_ua,,"Urinary problems (Examples: urinary tract infections, incontinence, prostate problems)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,75865,,75865,Disorder of urinary system -Yes,Yes,open-source,Yes,health_survey,radio,,1144,Question,mhoccur_rnl,,Kidney problems,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,2005200017,,2005200017,Kidney problems +Yes,Yes,open-source,Yes,health_survey,radio,,1144,Question,mhoccur_rnl,,Kidney problems,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,198124,,198124,Kidney disease Yes,Yes,open-source,Yes,health_survey,radio,,1145,Question,mhoccur_ear,,Hearing impairment,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,377889,,377889,Hearing loss Yes,Yes,open-source,Yes,health_survey,radio,,1146,Question,mhoccur_obs,,Obesity,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,433736,,433736,Obesity Yes,Yes,open-source,Yes,health_survey,radio,,1147,Question,fh_dm2pt,,Were either of your parents diagnosed with Type II Diabetes?,2005200018,2005200018,Were either of your parents diagnosed with Type II Diabetes?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, @@ -306,15 +306,15 @@ Yes,Yes,open-source,Yes,health_survey,radio,,1156,Question,mhoccur_ded,,Dry eye Yes,Yes,open-source,Yes,health_survey,radio,,1157,Question,mhoccur_yn,,"Have you been diagnosed with any conditions not listed above? (any condition, not just eyes)",2005200470,2005200470,"Have you been diagnosed with any conditions not listed above? (any condition, not just eyes)",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,,1159,Question,mhoccur_fall,,Have you fallen in the last 12 months? (a fall is defined as an event which results in a person coming to rest inadvertently on the ground or floor or other lower level),40757198,,Falls in the past year,Observation,LOINC,Survey,52552-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,health_survey,text,,1160,Question,mhoccur_fallot,,"If so, how many times in the last 12 months?",4310026,,Number of falls in last year,Observation,SNOMED,Observable Entity,391002003,S,skos:closeMatch,1,,,, -Yes,Yes,open-source,Yes,health_survey,text,,1161,Question,mhstartts,,Health Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Health Survey Started Timestamp (from REDCap),,2005200568,Health Survey -Yes,Yes,open-source,Yes,health_survey,text,,1162,Question,mhcmpts,,Heath Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Heath Survey Completed Timestamp (from REDCap),,2005200568,Health Survey +Yes,Yes,open-source,Yes,health_survey,text,,1161,Question,mhstartts,,Health Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Health Survey Started Timestamp (from REDCap),,2005200568,Health Survey +Yes,Yes,open-source,Yes,health_survey,text,,1162,Question,mhcmpts,,Heath Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Heath Survey Completed Timestamp (from REDCap),,2005200568,Health Survey Yes,Yes,open-source,No,health_survey,radio,mhoccur_mi,1894,Answer,1,mhoccur_mi_1,Yes,4329847,,Myocardial infarction,Condition,SNOMED,Disorder,22298006,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_mi,1895,Answer,0,mhoccur_mi_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_mi,1896,Answer,777,mhoccur_mi_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,health_survey,radio,mhoccur_cvdot,1897,Answer,1,mhoccur_cvdot_1,Yes,2005200627,2005200627,"Other heart issues (Examples: pacemaker, heart valve disease, open heart surgery)",Condition,AIREADI,Disorder,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_cvdot,1898,Answer,0,mhoccur_cvdot_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_cvdot,1899,Answer,777,mhoccur_cvdot_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,health_survey,radio,mhoccur_strk,1900,Answer,1,mhoccur_strk_1,Yes,2005200628,2005200628,Stroke,Condition,AIREADI,Disorder,,S,skos:exactMatch,1,,,, +Yes,Yes,open-source,No,health_survey,radio,mhoccur_strk,1900,Answer,1,mhoccur_strk_1,Yes,381316,,Cerebrovascular accident,Condition,SNOMED,Disorder,230690007,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_strk,1901,Answer,0,mhoccur_strk_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_strk,1902,Answer,777,mhoccur_strk_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,health_survey,radio,mhoccur_circ,1903,Answer,1,mhoccur_circ_1,Yes,2005200015,2005200015,"Circulation problems (Examples: arteriosclerosis, atherosclerosis, blood clots in lungs or leg veins)",Condition,AIREADI,Disorder,,S,skos:exactMatch,1,,,, @@ -366,7 +366,7 @@ Yes,Yes,open-source,No,health_survey,radio,mhoccur_gi,1948,Answer,777,mhoccur_gi Yes,Yes,open-source,No,health_survey,radio,mhoccur_ua,1949,Answer,1,mhoccur_ua_1,Yes,75865,,Disorder of urinary system,Condition,SNOMED,Disorder,128606002,S,skos:closeMatch,0.75,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_ua,1950,Answer,0,mhoccur_ua_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_ua,1951,Answer,777,mhoccur_ua_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,health_survey,radio,mhoccur_rnl,1952,Answer,1,mhoccur_rnl_1,Yes,2005200017,2005200017,Kidney problems,Condition,AIREADI,Disorder,,S,skos:exactMatch,1,,,, +Yes,Yes,open-source,No,health_survey,radio,mhoccur_rnl,1952,Answer,1,mhoccur_rnl_1,Yes,198124,,Kidney disease,Condition,SNOMED,Disorder,90708001,S,skos:closeMatch,0.75,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_rnl,1953,Answer,0,mhoccur_rnl_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_rnl,1954,Answer,777,mhoccur_rnl_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_ear,1955,Answer,1,mhoccur_ear_1,Yes,377889,,Hearing loss,Condition,SNOMED,Disorder,15188001,S,skos:exactMatch,1,,,, @@ -629,42 +629,42 @@ Yes,Yes,open-source,Yes,meds_assessment,radio,,1465,Question,cm_dcg,,"Have you t Yes,Yes,open-source,Yes,meds_assessment,radio,,1466,Question,cm_slp,,Have you taken sleeping pills in the past 2 weeks?,2005200150,2005200150,Have you taken sleeping pills in the past 2 weeks?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_asp,2949,Answer,0,cm_asp_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_asp,2950,Answer,1,cm_asp_1,Every day,45881677,,Every day,Meas Value,LOINC,Answer,LA14799-3,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,meds_assessment,radio,cm_asp,2951,Answer,2,cm_asp_2,A few days (<1 day/week),45884557,,Less than a day,Meas Value,LOINC,Answer,LA14482-6,S,skos:closeMatch,0.75,,,, +Yes,Yes,open-source,No,meds_assessment,radio,cm_asp,2951,Answer,2,cm_asp_2,A few days (<1 day/week),36210209,,Less than once a week,Meas Value,LOINC,Answer,LA27722-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_asp,2952,Answer,3,cm_asp_3,Some days (1-2 days/week),1620467,,A few days (1-2 days),Meas Value,LOINC,Answer,LA31669-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_asp,2953,Answer,4,cm_asp_4,Most days (3-4 days/week),1620862,,Most days (3-4 days),Meas Value,LOINC,Answer,LA31670-5,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_asp,2954,Answer,99,cm_asp_99,Don't know/not sure,45876636,,Don't know,Meas Value,LOINC,Answer,LA12688-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_asp,2955,Answer,777,cm_asp_777,Decline to answer,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_act,2956,Answer,0,cm_act_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_act,2957,Answer,1,cm_act_1,Every day,45881677,,Every day,Meas Value,LOINC,Answer,LA14799-3,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,meds_assessment,radio,cm_act,2958,Answer,2,cm_act_2,A few days (<1 day/week),45884557,,Less than a day,Meas Value,LOINC,Answer,LA14482-6,S,skos:closeMatch,0.75,,,, +Yes,Yes,open-source,No,meds_assessment,radio,cm_act,2958,Answer,2,cm_act_2,A few days (<1 day/week),36210209,,Less than once a week,Meas Value,LOINC,Answer,LA27722-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_act,2959,Answer,3,cm_act_3,Some days (1-2 days/week),1620467,,A few days (1-2 days),Meas Value,LOINC,Answer,LA31669-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_act,2960,Answer,4,cm_act_4,Most days (3-4 days/week),1620862,,Most days (3-4 days),Meas Value,LOINC,Answer,LA31670-5,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_act,2961,Answer,99,cm_act_99,Don't know/not sure,45876636,,Don't know,Meas Value,LOINC,Answer,LA12688-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_act,2962,Answer,777,cm_act_777,Decline to answer,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ibp,2963,Answer,0,cm_ibp_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ibp,2964,Answer,1,cm_ibp_1,Every day,45881677,,Every day,Meas Value,LOINC,Answer,LA14799-3,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,meds_assessment,radio,cm_ibp,2965,Answer,2,cm_ibp_2,A few days (<1 day/week),45884557,,Less than a day,Meas Value,LOINC,Answer,LA14482-6,S,skos:closeMatch,0.75,,,, +Yes,Yes,open-source,No,meds_assessment,radio,cm_ibp,2965,Answer,2,cm_ibp_2,A few days (<1 day/week),36210209,,Less than once a week,Meas Value,LOINC,Answer,LA27722-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ibp,2966,Answer,3,cm_ibp_3,Some days (1-2 days/week),1620467,,A few days (1-2 days),Meas Value,LOINC,Answer,LA31669-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ibp,2967,Answer,4,cm_ibp_4,Most days (3-4 days/week),1620862,,Most days (3-4 days),Meas Value,LOINC,Answer,LA31670-5,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ibp,2968,Answer,99,cm_ibp_99,Don't know/not sure,45876636,,Don't know,Meas Value,LOINC,Answer,LA12688-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ibp,2969,Answer,777,cm_ibp_777,Decline to answer,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ant,2970,Answer,0,cm_ant_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ant,2971,Answer,1,cm_ant_1,Every day,45881677,,Every day,Meas Value,LOINC,Answer,LA14799-3,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,meds_assessment,radio,cm_ant,2972,Answer,2,cm_ant_2,A few days (<1 day/week),45884557,,Less than a day,Meas Value,LOINC,Answer,LA14482-6,S,skos:closeMatch,0.75,,,, +Yes,Yes,open-source,No,meds_assessment,radio,cm_ant,2972,Answer,2,cm_ant_2,A few days (<1 day/week),36210209,,Less than once a week,Meas Value,LOINC,Answer,LA27722-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ant,2973,Answer,3,cm_ant_3,Some days (1-2 days/week),1620467,,A few days (1-2 days),Meas Value,LOINC,Answer,LA31669-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ant,2974,Answer,4,cm_ant_4,Most days (3-4 days/week),1620862,,Most days (3-4 days),Meas Value,LOINC,Answer,LA31670-5,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ant,2975,Answer,99,cm_ant_99,Don't know/not sure,45876636,,Don't know,Meas Value,LOINC,Answer,LA12688-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_ant,2976,Answer,777,cm_ant_777,Decline to answer,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_dcg,2977,Answer,0,cm_dcg_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_dcg,2978,Answer,1,cm_dcg_1,Every day,45881677,,Every day,Meas Value,LOINC,Answer,LA14799-3,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,meds_assessment,radio,cm_dcg,2979,Answer,2,cm_dcg_2,A few days (<1 day/week),45884557,,Less than a day,Meas Value,LOINC,Answer,LA14482-6,S,skos:closeMatch,0.75,,,, +Yes,Yes,open-source,No,meds_assessment,radio,cm_dcg,2979,Answer,2,cm_dcg_2,A few days (<1 day/week),36210209,,Less than once a week,Meas Value,LOINC,Answer,LA27722-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_dcg,2980,Answer,3,cm_dcg_3,Some days (1-2 days/week),1620467,,A few days (1-2 days),Meas Value,LOINC,Answer,LA31669-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_dcg,2981,Answer,4,cm_dcg_4,Most days (3-4 days/week),1620862,,Most days (3-4 days),Meas Value,LOINC,Answer,LA31670-5,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_dcg,2982,Answer,99,cm_dcg_99,Don't know/not sure,45876636,,Don't know,Meas Value,LOINC,Answer,LA12688-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_dcg,2983,Answer,777,cm_dcg_777,Decline to answer,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_slp,2984,Answer,0,cm_slp_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_slp,2985,Answer,1,cm_slp_1,Every day,45881677,,Every day,Meas Value,LOINC,Answer,LA14799-3,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,meds_assessment,radio,cm_slp,2986,Answer,2,cm_slp_2,A few days (<1 day/week),45884557,,Less than a day,Meas Value,LOINC,Answer,LA14482-6,S,skos:closeMatch,0.75,,,, +Yes,Yes,open-source,No,meds_assessment,radio,cm_slp,2986,Answer,2,cm_slp_2,A few days (<1 day/week),36210209,,Less than once a week,Meas Value,LOINC,Answer,LA27722-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_slp,2987,Answer,3,cm_slp_3,Some days (1-2 days/week),1620467,,A few days (1-2 days),Meas Value,LOINC,Answer,LA31669-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_slp,2988,Answer,4,cm_slp_4,Most days (3-4 days/week),1620862,,Most days (3-4 days),Meas Value,LOINC,Answer,LA31670-5,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,meds_assessment,radio,cm_slp,2989,Answer,99,cm_slp_99,Don't know/not sure,45876636,,Don't know,Meas Value,LOINC,Answer,LA12688-0,S,skos:exactMatch,1,,,, @@ -711,8 +711,8 @@ Yes,Yes,open-source,No,ophthalmic_survey,radio,,1256,Question,via3,,"Because of Yes,Yes,open-source,No,ophthalmic_survey,radio,,1257,Question,via4,,When was the last time you had your eyes examined by an eye care provider (ophthalmologist or optometrist)?,40758529,,Date of last eye examination,Observation,LOINC,Clinical Observation,55400-6,S,skos:closeMatch,0.75,,,, Yes,Yes,open-source,Yes,ophthalmic_survey,radio,,1258,Question,via5,,You have indicated that you have not seen an eye care professional in the past 12 months. What is the main reason you have not visited an eye care professional in the past 12 months?,2005200069,2005200069,You have indicated that you have not seen an eye care professional in the past 12 months. What is the main reason you have not visited an eye care professional in the past 12 months?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,ophthalmic_survey,radio,,1259,Question,via6,,When was the last time you had an eye exam in which the pupils were dilated? (This would have made you temporarily sensitive to bright light),2005200070,2005200070,When was the last time you had an eye exam in which the pupils were dilated? (This would have made you temporarily sensitive to bright light),Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,ophthalmic_survey,text,,1260,Question,viastartts,,Ophthalmic Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Ophthalmic Survey Started Timestamp (from REDCap),,2005200574,Ophthalmic Survey -Yes,Yes,open-source,Yes,ophthalmic_survey,text,,1261,Question,viacmpts,,Ophthalmic Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Ophthalmic Survey Completed Timestamp (from REDCap),,2005200574,Ophthalmic Survey +Yes,Yes,open-source,Yes,ophthalmic_survey,text,,1260,Question,viastartts,,Ophthalmic Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Ophthalmic Survey Started Timestamp (from REDCap),,2005200574,Ophthalmic Survey +Yes,Yes,open-source,Yes,ophthalmic_survey,text,,1261,Question,viacmpts,,Ophthalmic Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Ophthalmic Survey Completed Timestamp (from REDCap),,2005200574,Ophthalmic Survey Yes,Yes,open-source,No,ophthalmic_survey,radio,via1,2219,Answer,1,via1_1,No difficulty,45878948,,No difficulty,Meas Value,LOINC,Answer,LA15227-4,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,ophthalmic_survey,radio,via1,2220,Answer,2,via1_2,A little difficulty,45883842,,A little difficulty,Meas Value,LOINC,Answer,LA15725-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,ophthalmic_survey,radio,via1,2221,Answer,3,via1_3,Moderate difficulty,45879201,,Moderate difficulty,Meas Value,LOINC,Answer,LA15726-5,S,skos:exactMatch,1,,,, @@ -757,8 +757,8 @@ Yes,Yes,open-source,Yes,paid5_dm_survey,radio,,1215,Question,paid_wr,,Worrying a Yes,Yes,open-source,Yes,paid5_dm_survey,radio,,1216,Question,paid_eng,,Feeling that diabetes is taking up too much of your mental and physical energy every day,2005200047,2005200047,Feeling that diabetes is taking up too much of your mental and physical energy every day,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,paid5_dm_survey,radio,,1217,Question,paid_cml,,Coping with complications of diabetes,2005200048,2005200048,Coping with complications of diabetes,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,paid5_dm_survey,calc,,1218,Question,paidscore,,PAID score,2005200049,2005200049,PAID score,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,paid5_dm_survey,text,,1219,Question,paidstartts,,PAID-5 DM Survey Start Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,PAID-5 DM Survey Start Timestamp (from REDCap),,2005200571,PAID-5 DM Survey -Yes,Yes,open-source,Yes,paid5_dm_survey,text,,1220,Question,paidcmpts,,PAID-5 DM Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,PAID-5 DM Survey Completed Timestamp (from REDCap),,2005200571,PAID-5 DM Survey +Yes,Yes,open-source,Yes,paid5_dm_survey,text,,1219,Question,paidstartts,,PAID-5 DM Survey Start Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,PAID-5 DM Survey Start Timestamp (from REDCap),,2005200571,PAID-5 DM Survey +Yes,Yes,open-source,Yes,paid5_dm_survey,text,,1220,Question,paidcmpts,,PAID-5 DM Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,PAID-5 DM Survey Completed Timestamp (from REDCap),,2005200571,PAID-5 DM Survey Yes,Yes,open-source,Yes,paid5_dm_survey,radio,paid_scrd,2118,Answer,0,paid_scrd_0,Not a problem,2005200213,2005200213,Not a problem,Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,paid5_dm_survey,radio,paid_scrd,2119,Answer,1,paid_scrd_1,Minor problem,2005200214,2005200214,Minor problem,Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,paid5_dm_survey,radio,paid_scrd,2120,Answer,2,paid_scrd_2,Moderate problem,2005200215,2005200215,Moderate problem,Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, @@ -806,14 +806,14 @@ Yes,Yes,open-source,No,physical_assessment,text,,1490,Question,pulse_vsorres,,He Yes,Yes,open-source,No,physical_assessment,text,,1491,Question,bp2_sysbp_vsorres,,Systolic (mmHg),3004249,,Systolic blood pressure,Measurement,LOINC,Clinical Observation,8480-6,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,physical_assessment,text,,1492,Question,bp2_diabp_vsorres,,Diastolic (mmHg),3012888,,Diastolic blood pressure,Measurement,LOINC,Clinical Observation,8462-4,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,physical_assessment,text,,1493,Question,pulse_vsorres_2,,Heart Rate (bpm),3027018,,Heart rate,Measurement,LOINC,Clinical Observation,8867-4,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,physical_assessment,yesno,paate_6hr,,Answer,1,paate_6hr_1,Yes,44792839,,Non fasting,Observation,SNOMED,Clinical Finding,368441000000106,S,skos:exactMatch,1, 6 hours | 4048382,,4048382,6 hours -Yes,Yes,open-source,No,physical_assessment,yesno,paate_6hr,,Answer,0,paate_6hr_0,No,4060364,,Fasting,Observation,SNOMED,Clinical Finding,16985007,S,skos:exactMatch,1, 6 hours | 4048382,,4048382,6 hours +Yes,Yes,open-source,No,physical_assessment,yesno,paate_6hr,,Answer,1,paate_6hr_1,Yes,44792839,,Non fasting,Observation,SNOMED,Clinical Finding,368441000000106,S,skos:exactMatch,1,6 hours | 4048382,,4048382,6 hours +Yes,Yes,open-source,No,physical_assessment,yesno,paate_6hr,,Answer,0,paate_6hr_0,No,4060364,,Fasting,Observation,SNOMED,Clinical Finding,16985007,S,skos:exactMatch,1,6 hours | 4048382,,4048382,6 hours Yes,Yes,open-source,Yes,physical_assessment,yesno,,,Question,paate_6hr,,"Have you had anything to eat or drink in the last six hours, including coffee or tea with milk or sugar or any other drink other than water?",2005200629,2005200629,"Have you had anything to eat or drink in the last six hours, including coffee or tea with milk or sugar or any other drink other than water?",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,physical_assessment,yesno,paate_6hr,,Answer,1,paate_6hr_1,Yes,45877994,,Yes,Meas Value,LOINC,Answer,LA33-6,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,physical_assessment,yesno,paate_6hr,,Answer,0,paate_6hr_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,preconsent_survey,text,,1065,Question,preconcmpdat,,Pre-consent survey/form date (date survey/form opened),4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,Pre-consent survey/form date (date survey/form opened),,2005200564,Pre-consent Survey -Yes,Yes,open-source,Yes,preconsent_survey,text,,1069,Question,preconstartts,,Pre-consent Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Pre-consent Survey Started Timestamp (from REDCap),,2005200564,Pre-consent Survey -Yes,Yes,open-source,Yes,preconsent_survey,text,,1070,Question,preconcmpts,,Pre-consent Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Pre-consent Survey Completed Timestamp (from REDCap),,2005200564,Pre-consent Survey +Yes,Yes,open-source,Yes,preconsent_survey,text,,1069,Question,preconstartts,,Pre-consent Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Pre-consent Survey Started Timestamp (from REDCap),,2005200564,Pre-consent Survey +Yes,Yes,open-source,Yes,preconsent_survey,text,,1070,Question,preconcmpts,,Pre-consent Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Pre-consent Survey Completed Timestamp (from REDCap),,2005200564,Pre-consent Survey Yes,Yes,open-source,No,px_food_insecurity_survey,text,,1313,Question,pxsficmpdat,,PhenX Food Insecurity survey date,4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,PhenX Food Insecurity survey date,,2005200584,PhenX Food Insecurity Survey Yes,Yes,open-source,No,px_food_insecurity_survey,radio,,1316,Question,pxfi1,,"The first statement is, ""The food that (I/we) bought just didn't last, and (I/we) didn't have money to get more."" Was that often, sometimes, or never true for (you/your household) in the last 12 months?",36306143,,Within the past 12 months the food we bought just didn't last and we didn't have money to get more [U.S. FSS],Observation,LOINC,Survey,88123-5,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_food_insecurity_survey,radio,,1317,Question,pxfi2,,"""(I/we) couldn't afford to eat balanced meals."" Was that often, sometimes, or never true for (you/your household) in the last 12 months?",36660487,,"In the last 12 months, we couldn't afford to eat balanced meals [U.S. FSS]",Observation,LOINC,Survey,95248-1,S,skos:exactMatch,1,,,, @@ -821,8 +821,8 @@ Yes,Yes,open-source,No,px_food_insecurity_survey,radio,,1318,Question,pxfi3,,"In Yes,Yes,open-source,No,px_food_insecurity_survey,radio,,1319,Question,food_insecurity_change_diet_frequency,,"How often did this happen - almost every month, some months but not every month, or in only 1 or 2 months?",36660018,,"In the last 12 months, how often did you cut the size of your meals or skip meals because there wasn't enough money for food [U.S. FSS]",Observation,LOINC,Survey,95250-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,px_food_insecurity_survey,radio,,1320,Question,pxfi4,,"In the last 12 months, did you ever eat less than you felt you should because there wasn't enough money to buy food?",36659800,,"In the last 12 months, did you ever eat less than you felt you should because there wasn't enough money for food [U.S. FSS]",Observation,LOINC,Survey,95251-5,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_food_insecurity_survey,radio,,1321,Question,pxfi5,,"In the last 12 months, were you ever hungry but didn't eat because you couldn't afford enough food?",36660509,,"In the last 12 months, were you ever hungry but didn't eat because there wasn't enough money for food [U.S. FSS]",Observation,LOINC,Survey,95252-3,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,px_food_insecurity_survey,text,,1322,Question,pxfistartts,,PhenX Food Insecurity Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:exactMatch,1,PhenX Food Insecurity Survey Started Timestamp (from REDCap),,2005200584,PhenX Food Insecurity Survey -Yes,Yes,open-source,Yes,px_food_insecurity_survey,text,,1323,Question,pxsficmpts,,PhenX Food Insecurity Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:exactMatch,1,PhenX Food Insecurity Survey Completed Timestamp (from REDCap),,2005200584,PhenX Food Insecurity Survey +Yes,Yes,open-source,Yes,px_food_insecurity_survey,text,,1322,Question,pxfistartts,,PhenX Food Insecurity Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:exactMatch,1,PhenX Food Insecurity Survey Started Timestamp (from REDCap),,2005200584,PhenX Food Insecurity Survey +Yes,Yes,open-source,Yes,px_food_insecurity_survey,text,,1323,Question,pxsficmpts,,PhenX Food Insecurity Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:exactMatch,1,PhenX Food Insecurity Survey Completed Timestamp (from REDCap),,2005200584,PhenX Food Insecurity Survey Yes,Yes,open-source,Yes,px_food_insecurity_survey,text,,1324,Question,px270301_metadata,,PhenX MetaData,2005200102,2005200102,PhenX MetaData,Observation,AIREADI,Survey,,S,skos:exactMatch,1,PhenX Food Insecurity MetaData,,2005200584,PhenX Food Insecurity Survey Yes,Yes,open-source,No,px_food_insecurity_survey,radio,pxfi1,2473,Answer,1,pxfi1_1,Often true,36309834,,Often true,Meas Value,LOINC,Answer,LA28397-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_food_insecurity_survey,radio,pxfi1,2474,Answer,2,pxfi1_2,Sometimes true,45877955,,Sometimes true,Meas Value,LOINC,Answer,LA6729-3,S,skos:exactMatch,1,,,, @@ -928,8 +928,8 @@ Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne9,2552,Answe Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne9,2553,Answer,2,pxne9_2,Somewhat disagree,45879539,,Somewhat disagree,Meas Value,LOINC,Answer,LA15234-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne9,2554,Answer,3,pxne9_3,Somewhat agree,45884684,,Somewhat agree,Meas Value,LOINC,Answer,LA15235-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne9,2555,Answer,4,pxne9_4,Strongly agree,45879208,,Strongly agree,Meas Value,LOINC,Answer,LA15237-3,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne9_,2556,Answer,555,pxne9__555,Don't know/Not sure,45876636,,Don't know,Meas Value,LOINC,Answer,LA12688-0,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne9_,2557,Answer,777,pxne9__777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, +Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne9,2556,Answer,555,pxne9_555,Don't know/Not sure,45876636,,Don't know,Meas Value,LOINC,Answer,LA12688-0,S,skos:exactMatch,1,,,, +Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne9,2557,Answer,777,pxne9_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne10,2558,Answer,1,pxne10_1,Strongly disagree,45882953,,Strongly disagree,Meas Value,LOINC,Answer,LA15236-5,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne10,2559,Answer,2,pxne10_2,Somewhat disagree,45879539,,Somewhat disagree,Meas Value,LOINC,Answer,LA15234-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_neighborhood_environment_survey,radio,pxne10,2560,Answer,3,pxne10_3,Somewhat agree,45884684,,Somewhat agree,Meas Value,LOINC,Answer,LA15235-7,S,skos:exactMatch,1,,,, @@ -1032,8 +1032,8 @@ Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,radio,,1401,Quest Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,radio,,1402,Question,pxrd52,,In the Past Year?,2005200541,2005200541,How different would your life be now if you HAD NOT BEEN treated in a racist and unfair way? In the Past Year?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,radio,,1403,Question,pxrd53,,In your entire life?,2005200542,2005200542,How different would your life be now if you HAD NOT BEEN treated in a racist and unfair way? In your entire life?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,radio,,1404,Question,pxrd54,,"On a scale of 1-6, how stressful was this for you? 1 = Not at all stressful; 6 = Extremely stressful",2005200543,2005200543,"How different would your life be now if you HAD NOT BEEN treated in a racist and unfair way? On a scale of 1-6, how stressful was this for you? 1 = Not at all stressful; 6 = Extremely stressful",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,text,,1405,Question,pxrdcmpts,,PhenX Racial/Ethnic Discrimination Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:exactMatch,1,PhenX Racial/Ethnic Discrimination Survey Completed Timestamp (from REDCap),,2005200586,PhenX Racial/Ethnic Survey -Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,text,,1406,Question,pxrdstartts,,PhenX Racial/Ethnic Discrimination Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:exactMatch,1,PhenX Racial/Ethnic Discrimination Survey Started Timestamp (from REDCap),,2005200586,PhenX Racial/Ethnic Survey +Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,text,,1405,Question,pxrdcmpts,,PhenX Racial/Ethnic Discrimination Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:exactMatch,1,PhenX Racial/Ethnic Discrimination Survey Completed Timestamp (from REDCap),,2005200586,PhenX Racial/Ethnic Survey +Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,text,,1406,Question,pxrdstartts,,PhenX Racial/Ethnic Discrimination Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:exactMatch,1,PhenX Racial/Ethnic Discrimination Survey Started Timestamp (from REDCap),,2005200586,PhenX Racial/Ethnic Survey Yes,Yes,open-source,Yes,px_racial_ethnic_discrimination_survey,text,,1407,Question,px281501_metadata,,PhenX Racial/Ethnic MetaData,2005200102,2005200102,PhenX MetaData,Observation,AIREADI,Survey,,S,skos:exactMatch,1,PhenX Racial/Ethnic MetaData,,2005200586,PhenX Racial/Ethnic Survey Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd1,2605,Answer,1,pxrd1_1,Never,45876662,,Never,Meas Value,LOINC,Answer,LA6270-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd1,2606,Answer,2,pxrd1_2,Once in a while,45879593,,Occasionally,Meas Value,LOINC,Answer,LA6483-7,S,skos:closeMatch,1,,,, @@ -1083,9 +1083,9 @@ Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd8,2649,A Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd8,2650,Answer,5,pxrd8_5,Most of the time,45879199,,Most of the time,Meas Value,LOINC,Answer,LA14734-0,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd8,2651,Answer,6,pxrd8_6,Almost all the time,45883838,,All the time,Meas Value,LOINC,Answer,LA14726-6,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd8,2652,Answer,777,pxrd8_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd9,2653,Answer,1,pxrd9_1,1 - Not at all stressful,36210226,,Not at all bothersome,Meas Value,LOINC,Answer,LA24969-0,S,skos:closeMatch,1,,,, -Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd9,2654,Answer,6,pxrd9_6,6 - Extremely stressful,36210124,,Extremely bothersome,Meas Value,LOINC,Answer,LA27766-7,S,skos:closeMatch,1,,,, -Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd9,2655,Answer,777,pxrd9_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, +Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pdrx9,2653,Answer,1,pdrx9_1,1 - Not at all stressful,36210226,,Not at all bothersome,Meas Value,LOINC,Answer,LA24969-0,S,skos:closeMatch,1,,,, +Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pdrx9,2654,Answer,6,pdrx9_6,6 - Extremely stressful,36210124,,Extremely bothersome,Meas Value,LOINC,Answer,LA27766-7,S,skos:closeMatch,1,,,, +Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pdrx9,2655,Answer,777,pdrx9_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd10,2656,Answer,1,pxrd10_1,Never,45876662,,Never,Meas Value,LOINC,Answer,LA6270-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd10,2657,Answer,2,pxrd10_2,Once in a while,45879593,,Occasionally,Meas Value,LOINC,Answer,LA6483-7,S,skos:closeMatch,1,,,, Yes,Yes,open-source,No,px_racial_ethnic_discrimination_survey,radio,pxrd10,2658,Answer,3,pxrd10_3,Sometimes,45882528,,Sometimes,Meas Value,LOINC,Answer,LA10082-8,S,skos:exactMatch,1,,,, @@ -1379,8 +1379,8 @@ Yes,Yes,open-source,No,px_sdoh_combined_survey,radio,,1299,Question,pxdhc4,,A do Yes,Yes,open-source,No,px_sdoh_combined_survey,radio,,1300,Question,pxdhc5,,A doctor or nurse acts as if he or she is afraid of you.,40192423,,How often does a doctor or nurse act as if he or she is afraid of you when you go to a doctor's office or other health care provider?,Observation,PPI,Question,sdoh_dms_5,S,skos:closeMatch,0.75,,,, Yes,Yes,open-source,No,px_sdoh_combined_survey,radio,,1301,Question,pxdhc6,,A doctor or nurse acts as if he or she is better than you.,40192383,,How often does a doctor or nurse act as if he or she is better than you when you go to a doctor's office or other health care provider?,Observation,PPI,Question,sdoh_dms_7,S,skos:closeMatch,0.75,,,, Yes,Yes,open-source,No,px_sdoh_combined_survey,radio,,1302,Question,pxdhc7,,You feel like a doctor or nurse is not listening to what you were saying,40192394,,How often do you feel like a doctor or nurse is not listening to what you were saying. when you go to a doctor's office or other health care provider?,Observation,PPI,Question,sdoh_dms_6,S,skos:closeMatch,0.75,,,, -Yes,Yes,open-source,Yes,px_sdoh_combined_survey,text,,1303,Question,pxsdohstartts,,PhenX SDOH Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,PhenX SDOH Survey Started Timestamp (from REDCap),,2005200575,PhenX SDOH Survey -Yes,Yes,open-source,Yes,px_sdoh_combined_survey,text,,1304,Question,pxsdohcmpts,,PhenX SDOH Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,PhenX SDOH Survey Completed Timestamp (from REDCap),,2005200575,PhenX SDOH Survey +Yes,Yes,open-source,Yes,px_sdoh_combined_survey,text,,1303,Question,pxsdohstartts,,PhenX SDOH Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,PhenX SDOH Survey Started Timestamp (from REDCap),,2005200575,PhenX SDOH Survey +Yes,Yes,open-source,Yes,px_sdoh_combined_survey,text,,1304,Question,pxsdohcmpts,,PhenX SDOH Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,PhenX SDOH Survey Completed Timestamp (from REDCap),,2005200575,PhenX SDOH Survey Yes,Yes,open-source,Yes,px_sdoh_combined_survey,text,,1305,Question,px270201_metadata,,PhenX English Proficiency MetaData,2005200102,2005200102,PhenX MetaData,Observation,AIREADI,Survey,,S,skos:exactMatch,1,PhenX English Proficiency MetaData,,2005200576,PhenX English Proficiency Survey Yes,Yes,open-source,Yes,px_sdoh_combined_survey,text,,1306,Question,px011002_metadata,,PhenX Education Attainment MetaData,2005200102,2005200102,PhenX MetaData,Observation,AIREADI,Survey,,S,skos:exactMatch,1,PhenX Education Attainment MetaData,,2005200577,PhenX Education Attainment Survey Yes,Yes,open-source,Yes,px_sdoh_combined_survey,text,,1307,Question,px280301_metadata,,PhenX Job Security MetaData,2005200102,2005200102,PhenX MetaData,Observation,AIREADI,Survey,,S,skos:exactMatch,1,PhenX Job Security MetaData,,2005200578,PhenX Job Security Survey @@ -1603,8 +1603,8 @@ Yes,Yes,open-source,No,px_sdoh_combined_survey,radio,pxdhc7,2470,Answer,4,pxdhc7 Yes,Yes,open-source,No,px_sdoh_combined_survey,radio,pxdhc7,2471,Answer,5,pxdhc7_5,Always,45882536,,Always,Meas Value,LOINC,Answer,LA9933-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,px_sdoh_combined_survey,radio,pxdhc7,2472,Answer,777,pxdhc7_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,recruitment_survey,text,,1025,Question,reccmpdat,,Recruitment survey date (date survey/form opened),4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,,,2005200561,Recruitment Survey -Yes,Yes,open-source,Yes,recruitment_survey,text,,1029,Question,recstartts,,Recruitment Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Recruitment Survey Started Timestamp (from REDCap),,2005200561,Recruitment Survey -Yes,Yes,open-source,Yes,recruitment_survey,text,,1030,Question,reccmpts,,Recruitment Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Recruitment Survey Completed Timestamp (from REDCap),,2005200561,Recruitment Survey +Yes,Yes,open-source,Yes,recruitment_survey,text,,1029,Question,recstartts,,Recruitment Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Recruitment Survey Started Timestamp (from REDCap),,2005200561,Recruitment Survey +Yes,Yes,open-source,Yes,recruitment_survey,text,,1030,Question,reccmpts,,Recruitment Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Recruitment Survey Completed Timestamp (from REDCap),,2005200561,Recruitment Survey Yes,Yes,open-source,Yes,retinal_imaging_v2,yesno,,,Question,rtop_odd,,OptoMed-Disc centered-CFP,2005200289,2005200289,OptoMed-Disc centered-CFP,Observation,AIREADI-Vision,Observable Entity,,S,skos:exactMatch,1,right eye|45876703,,45876703,Right eye Yes,Yes,open-source,Yes,retinal_imaging_v2,yesno,,,Question,rtop_odm,,OptoMed-Mac centered-CFP,2005200290,2005200290,OptoMed-Mac centered-CFP,Observation,AIREADI-Vision,Observable Entity,,S,skos:exactMatch,1,right eye|45876703,,45876703,Right eye Yes,Yes,open-source,Yes,retinal_imaging_v2,yesno,,,Question,rtei_odir,,Eidon-UWF Central-IR,2005200291,2005200291,Eidon-UWF Central-IR,Observation,AIREADI-Vision,Observable Entity,,S,skos:exactMatch,1,right eye|45876703,,45876703,Right eye @@ -1748,8 +1748,8 @@ Yes,Yes,open-source,Yes,screening_survey,radio,,1046,Question,cmtrt_a1c,,"Do you Yes,Yes,open-source,Yes,screening_survey,yesno,,1047,Question,cmtrt_insln,,Do you inject insulin to control your blood glucose levels?,2005200549,2005200549,Do you inject insulin to control your blood glucose levels?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,screening_survey,yesno,,1048,Question,cmtrt_glcs,,"Do you use other injections to control your blood glucose levels? Examples: Victoza, Ozempic, Symlin, Tanzeum, and Trulicity",2005200550,2005200550,"Do you use other injections to control your blood glucose levels? Examples: Victoza, Ozempic, Symlin, Tanzeum, and Trulicity",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,screening_survey,yesno,,1049,Question,cmtrt_lfst,,"Do you use lifestyle changes to control your A1C and blood glucose levels? Examples: regular exercise, avoiding sugary foods and beverages, eating a balanced diet with lots of vegetables, sticking to a consistent eating schedule",2005200004,2005200004,"Do you use lifestyle changes to control your A1C and blood glucose levels? Examples: regular exercise, avoiding sugary foods and beverages, eating a balanced diet with lots of vegetables, sticking to a consistent eating schedule",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,screening_survey,text,,1060,Question,scrstartts,,Screening Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Screening Survey Started Timestamp (from REDCap),,2005200563,Screening Survey -Yes,Yes,open-source,Yes,screening_survey,text,,1061,Question,scrcmpts,,Screening Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Screening Survey Completed Timestamp (from REDCap),,2005200563,Screening Survey +Yes,Yes,open-source,Yes,screening_survey,text,,1060,Question,scrstartts,,Screening Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Screening Survey Started Timestamp (from REDCap),,2005200563,Screening Survey +Yes,Yes,open-source,Yes,screening_survey,text,,1061,Question,scrcmpts,,Screening Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Screening Survey Completed Timestamp (from REDCap),,2005200563,Screening Survey Yes,Yes,open-source,No,screening_survey,radio,cmtrt_a1c,1790,Answer,1,cmtrt_a1c_1,Yes,4016042,,Diabetic on oral treatment,Observation,SNOMED,Clinical Finding,170746002,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,screening_survey,radio,cmtrt_a1c,1791,Answer,0,cmtrt_a1c_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,screening_survey,yes,mhterm_dm1,,Answer,1,mhterm_dm1_1,Yes,45877994,,Yes,Meas Value,LOINC,Answer,LA33-6,S,skos:exactMatch,1,,,, @@ -1801,8 +1801,8 @@ Yes,Yes,open-source,Yes,substance_use_survey,radio,,1188,Question,sumrjcdur,,Do Yes,Yes,open-source,Yes,substance_use_survey,checkbox,,1189,Question,sumrjtrt,,In what form do you usually use marijuana? (check all that apply),2005200037,2005200037,In what form do you usually use marijuana? (check all that apply),Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,substance_use_survey,dropdown,,1190,Question,sumrjceddur,,How many total years have you used marijuana?,2005200038,2005200038,How many total years have you used marijuana?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,substance_use_survey,dropdown,,1191,Question,sumrjfr,,"When you used marijuana, approximately how many days in a typical week would you use it?",2005200039,2005200039,"When you used marijuana, approximately how many days in a typical week would you use it?",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,Yes,substance_use_survey,text,,1192,Question,sustartts,,Substance Use Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Substance Use Survey Started Timestamp (from REDCap),,2005200569,Substance Use Survey -Yes,Yes,open-source,Yes,substance_use_survey,text,,1193,Question,sucmpts,,Substance Use Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,118575009,S,skos:closeMatch,0.75,Substance Use Survey Completed Timestamp (from REDCap),,2005200569,Substance Use Survey +Yes,Yes,open-source,Yes,substance_use_survey,text,,1192,Question,sustartts,,Substance Use Survey Started Timestamp (from REDCap),2005200558,,Survey Started Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Substance Use Survey Started Timestamp (from REDCap),,2005200569,Substance Use Survey +Yes,Yes,open-source,Yes,substance_use_survey,text,,1193,Question,sucmpts,,Substance Use Survey Completed Timestamp (from REDCap),2005200559,,Survey Completed Timestamp,Observation,AIREADI,Qualifier Value,,S,skos:closeMatch,0.75,Substance Use Survey Completed Timestamp (from REDCap),,2005200569,Substance Use Survey Yes,Yes,open-source,No,substance_use_survey,radio,susmkncf,1999,Answer,1,susmkncf_1,Yes,40766306,,Smoked at least 100 cigarettes in entire life,Observation,LOINC,Clinical Observation,63581-3,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,substance_use_survey,radio,susmkncf,2000,Answer,0,susmkncf_0,No,45878245,,No,Meas Value,LOINC,Answer,LA32-8,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,substance_use_survey,radio,susmkncf,2001,Answer,777,susmkncf_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, @@ -1814,7 +1814,7 @@ Yes,Yes,open-source,No,substance_use_survey,radio,susmkcdur,2006,Answer,777,susm Yes,Yes,open-source,No,substance_use_survey,dropdown,susmkstoage,2007,Answer,98,susmkstoage_98,More than 60 years old,45882614,,60 or older,Meas Value,LOINC,Answer,LA16058-2,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,substance_use_survey,dropdown,susmkstoage,2008,Answer,999,susmkstoage_999,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,substance_use_survey,dropdown,susmkdosfr,2009,Answer,21,susmkdosfr_21,21-30 (up to 1.5 packs),45881687,,21-30 (2 points),Meas Value,LOINC,Answer,LA15914-7,S,skos:closeMatch,1,,,, -Yes,Yes,open-source,No,substance_use_survey,dropdown,susmkdosfr,2010,Answer,31,susmkdosfr_31,31-40 (up to 2 packs),45884478,,31 or more (3 points),Meas Value,LOINC,Answer,LA15915-4,S,skos:closeMatch,1,,,, +Yes,Yes,open-source,Yes,substance_use_survey,dropdown,susmkdosfr,2010,Answer,31,susmkdosfr_31,31-40 (up to 2 packs),2005200636,2005200636,31-40 (up to 2 packs),Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,substance_use_survey,dropdown,susmkdosfr,2011,Answer,41,susmkdosfr_41,41-50 (up to 2.5 packs),2005200194,2005200194,41-50 (up to 2.5 packs),Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,substance_use_survey,dropdown,susmkdosfr,2012,Answer,51,susmkdosfr_51,More than 50 (3 or more packs),2005200195,2005200195,More than 50 (3 or more packs),Meas Value,AIREADI,Answer,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,substance_use_survey,dropdown,susmkdosfr,2013,Answer,999,susmkdosfr_999,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,,