diff --git a/CHANGELOG.md b/CHANGELOG.md index ff33142..af1bfc9 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -22,11 +22,19 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/). - `mhoccur_ua` "Urinary problems (Examples: urinary tract infections, incontinence, prostate problems)" (lines 309, 389): 81902 Urinary tract infectious disease → 75865 Disorder of urinary system (SNOMED 128606002), closeMatch 0.75. The previous concept covered infections only. - `mhoccur_clsh` "High blood cholesterol" (lines 295, 346): 4159131 Dyslipidemia → 4029305 Hypercholesterolemia (SNOMED 13644009), exactMatch 1. The previous concept was broader than the question. - `mhoccur_ca` "Cancer (any type)" (lines 306, 380): 4194405 Cancer confirmed (Context-dependent) → 443392 Malignant neoplastic disease (SNOMED 363346000, Disorder), exactMatch 1, the standard concept used for "any cancer" cohort definitions. +- Health history question rows left unchanged in v1.1 (lines 301, 311, 319): v1.1 corrected the "Yes" → Condition targets for `mhoccur_cogn_1` (line 365), `mhoccur_ear_1` (line 395) and `mhoccur_crt_1` (line 421), but the matching question rows kept the old concepts in `MODIFIER`, `qualifier_concept_id` and `qualifier_source_value`. They now match the Condition targets, so OBSERVATION and CONDITION_OCCURRENCE agree: + - `mhoccur_cogn` (line 301): 439795 Minimal cognitive impairment → 4297400 Mild neurocognitive disorder. + - `mhoccur_ear` (line 311): 439378 Ear anomalies with hearing impairment → 377889 Hearing loss. + - `mhoccur_crt` (line 319): 4317977 Bilateral cataracts → 375545 Cataract. ### Fixed - `dcvgmenyn` "Dexcom G6 transmitter returned?" (line 127): `qualifier_concept_id` 1615066 → 2615313 (Transmitter; external, for use with non-durable medical equipment interstitial continuous glucose monitoring system; HCPCS, Device, standard). Concept 1615066 (GLUCOSE TRANSMITTER DEXCOM G6) is not present in the deployed OMOP vocabulary (Databricks `omop_vocab`), and no Dexcom G6 device concept exists there. 2615313 was chosen over 45764014 (Invasive interstitial-fluid glucose monitoring system, SNOMED) because the question and `qualifier_source_value` refer specifically to the transmitter. `qualifier_source_value` is unchanged. Target concept 2005200589 is unchanged. +- `TARGET_CONCEPT_NAME` aligned with the deployed OMOP vocabulary for two rows (metadata only; concept IDs unchanged): + - `dvamwendhand_3` (line 140, 763013): "Not Provided" → "Not provided". The map now uses one spelling for this concept. + - `cmdosfrq` (line 334, 3042548): "Current Medication, Frequency" → "Current medication, Frequency". + ### Regenerated - map2omop and open-source public versions, SSSOM and LinkML from the v1.3 common file. Counts (`run_counts.py`): standard 1,409 elements (379 distinct concepts, down from 380 because 607008 is no longer used; the four condition replacements are one-for-one); custom 489 (344); mapped 1,898 (723); designated but unmapped 106. diff --git a/codemeta.json b/codemeta.json index 9713077..b135660 100644 --- a/codemeta.json +++ b/codemeta.json @@ -9,7 +9,7 @@ "issueTracker": "https://github.com/AI-READI/DataElementMaps/issues", "version": "v1.3", "datePublished": "2026-10-17", - "releaseNotes": "Concept map v1.3: line 127 qualifier 1615066 replaced with 2615313; cmtrt_lfst_1 Yes answer 607008 replaced with 45877994; four health history condition concepts corrected (neurological, urinary, high cholesterol, cancer). See CHANGELOG.md.", + "releaseNotes": "Concept map v1.3: line 127 qualifier 1615066 replaced with 2615313; cmtrt_lfst_1 Yes answer 607008 replaced with 45877994; four health history condition concepts corrected (neurological, urinary, high cholesterol, cancer); three health history question qualifiers aligned with their v1.1 Condition targets (cognitive impairment, hearing loss, cataract); two concept names aligned with the OMOP vocabulary. See CHANGELOG.md.", "dateCreated": "2023-06-28", "dateModified": "2026-10-16", "applicationCategory": "Scientific", diff --git a/redCapDataDictionaryWithExtension/linkml/ai_readi_redcap_value_set_mapping_data.yaml b/redCapDataDictionaryWithExtension/linkml/ai_readi_redcap_value_set_mapping_data.yaml index 76fd55f..884f37d 100644 --- a/redCapDataDictionaryWithExtension/linkml/ai_readi_redcap_value_set_mapping_data.yaml +++ b/redCapDataDictionaryWithExtension/linkml/ai_readi_redcap_value_set_mapping_data.yaml @@ -2867,7 +2867,7 @@ mappings: src_code: dvamwendhand_3 src_cd_description: Not Provided target_concept_id: 763013 - target_concept_name: Not Provided + target_concept_name: Not provided target_domain_id: Meas Value target_vocabulary_id: SNOMED target_concept_class_id: Qualifier Value @@ -6407,9 +6407,9 @@ mappings: target_standard_concept: S predicate_id: skos:exactMatch confidence: 1.0 - modifier: '439795' - qualifier_concept_id: 439795 - qualifier_source_value: Minimal cognitive impairment + modifier: '4297400' + qualifier_concept_id: 4297400 + qualifier_source_value: Mild neurocognitive disorder - mapping_record_id: AIREADI_MAPPING_0301 map_to_omop: 'Yes' transferred_to_fairhub_redcap_dataset: 'Yes' @@ -6637,9 +6637,9 @@ mappings: target_standard_concept: S predicate_id: skos:exactMatch confidence: 1.0 - modifier: '439378' - qualifier_concept_id: 439378 - qualifier_source_value: Ear anomalies with hearing impairment + modifier: '377889' + qualifier_concept_id: 377889 + qualifier_source_value: Hearing loss - mapping_record_id: AIREADI_MAPPING_0311 map_to_omop: 'Yes' transferred_to_fairhub_redcap_dataset: 'Yes' @@ -6809,9 +6809,9 @@ mappings: target_standard_concept: S predicate_id: skos:exactMatch confidence: 1.0 - modifier: '4317977' - qualifier_concept_id: 4317977 - qualifier_source_value: Bilateral cataracts + modifier: '375545' + qualifier_concept_id: 375545 + qualifier_source_value: Cataract - mapping_record_id: AIREADI_MAPPING_0319 map_to_omop: 'Yes' transferred_to_fairhub_redcap_dataset: 'Yes' @@ -7124,7 +7124,7 @@ mappings: src_code: cmdosfrq src_cd_description: 'Frequency taken or applied:' target_concept_id: 3042548 - target_concept_name: Current Medication, Frequency + target_concept_name: Current medication, Frequency target_domain_id: Observation target_vocabulary_id: LOINC target_concept_class_id: Claims Attachment diff --git a/redCapDataDictionaryWithExtension/sssom/ai_readi_redcap_value_set_mapping.sssom.tsv b/redCapDataDictionaryWithExtension/sssom/ai_readi_redcap_value_set_mapping.sssom.tsv index 33fcacc..95dd5e7 100644 --- a/redCapDataDictionaryWithExtension/sssom/ai_readi_redcap_value_set_mapping.sssom.tsv +++ b/redCapDataDictionaryWithExtension/sssom/ai_readi_redcap_value_set_mapping.sssom.tsv @@ -124,7 +124,7 @@ AIREADI_REDCAP:device_return.dvamwendhand Participant's dominant hand skos:exact AIREADI_REDCAP:device_return.dvamwendhand_1 Right hand skos:exactMatch OMOP:45881626 Right semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation device_return radio dvamwendhand dvamwendhand_1 Answer 45881626 Meas Value LOINC Answer LA4306-2 S No open-source Yes AIREADI_REDCAP:device_return.dvamwendhand_2 Left hand skos:exactMatch OMOP:45883143 Left semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation device_return radio dvamwendhand dvamwendhand_2 Answer 45883143 Meas Value LOINC Answer LA4585-1 S No open-source Yes AIREADI_REDCAP:device_return.dvamwendhand_4 Neither (ambidextrous) skos:exactMatch OMOP:4045863 Ambidextrous semapv:ManualMappingCuration 1 AI-READI REDCap SNOMED AI-READI manual_curation device_return radio dvamwendhand dvamwendhand_4 Answer 4045863 Observation SNOMED Clinical Finding 23088002 S No open-source Yes -AIREADI_REDCAP:device_return.dvamwendhand_3 Not Provided skos:exactMatch OMOP:763013 Not Provided semapv:ManualMappingCuration 1 AI-READI REDCap SNOMED AI-READI manual_curation device_return radio dvamwendhand dvamwendhand_3 Answer 763013 Meas Value SNOMED Qualifier Value 434941000124101 S No open-source Yes +AIREADI_REDCAP:device_return.dvamwendhand_3 Not Provided skos:exactMatch OMOP:763013 Not provided semapv:ManualMappingCuration 1 AI-READI REDCap SNOMED AI-READI manual_curation device_return radio dvamwendhand dvamwendhand_3 Answer 763013 Meas Value SNOMED Qualifier Value 434941000124101 S No open-source Yes AIREADI_REDCAP:diabetes_survey.dmlcmpdat Diabetes survey date skos:closeMatch OMOP:4160030 Performed semapv:ManualMappingCuration 0.75 AI-READI REDCap SNOMED AI-READI manual_curation Diabetes survey date diabetes_survey text 1221 dmlcmpdat Question 4160030 Observation SNOMED Qualifier Value 398166005 S No open-source Yes 2005200572 Diabetes Survey AIREADI_REDCAP:diabetes_survey.dmlvex In a typical week, how often do you engage in vigorous exercise? (Examples: hiking, jogging at 6 mph, shoveling, carrying heavy loads, bicycling fast (14-16 mph), playing basketball, playing soccer, playing tennis, or any activity during which you cannot say more than a few words without taking a breath) skos:exactMatch OMOP:2005200277 In a typical week, how often do you engage in vigorous exercise? (Examples: hiking, jogging at 6 mph, shoveling, carrying heavy loads, bicycling fast (14-16 mph), playing basketball, playing soccer, playing tennis, or any activity during which you cannot say more than a few words without taking a breath) semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation diabetes_survey radio 1224 dmlvex Question 2005200277 2005200277 Observation AIREADI Clinical Finding S Yes open-source Yes AIREADI_REDCAP:diabetes_survey.dmlact What would you consider your typical activity level to be? skos:closeMatch OMOP:44808782 Level of physical activity semapv:ManualMappingCuration 1 AI-READI REDCap SNOMED AI-READI manual_curation diabetes_survey radio 1225 dmlact Question 44808782 Observation SNOMED Observable Entity 859981000000107 S No open-source Yes @@ -285,7 +285,7 @@ AIREADI_REDCAP:health_survey.mhoccur_lbp Low blood pressure skos:exactMatch OMOP AIREADI_REDCAP:health_survey.mhoccur_pd Parkinson's disease skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 381270 health_survey radio 1129 mhoccur_pd Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 381270 Parkinson's disease AIREADI_REDCAP:health_survey.mhoccur_ad Dementia (Examples: Alzheimer's Disease, vascular dementia, etc) skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 4182210 health_survey radio 1130 mhoccur_ad Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 4182210 Dementia AIREADI_REDCAP:health_survey.mhcat_adot If yes, please choose between: skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 378419 health_survey radio 1131 mhcat_adot Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 378419 Alzheimer's disease -AIREADI_REDCAP:health_survey.mhoccur_cogn "Mild cognitive impairment (known as ""MCI""; mild but noticeable cognitive changes, may slow or interfere with daily activities but does not stop them)" skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 439795 health_survey radio 1133 mhoccur_cogn Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 439795 Minimal cognitive impairment +AIREADI_REDCAP:health_survey.mhoccur_cogn "Mild cognitive impairment (known as ""MCI""; mild but noticeable cognitive changes, may slow or interfere with daily activities but does not stop them)" skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 4297400 health_survey radio 1133 mhoccur_cogn Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 4297400 Mild neurocognitive disorder AIREADI_REDCAP:health_survey.mhoccur_ms Multiple sclerosis skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 374919 health_survey radio 1134 mhoccur_ms Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 374919 Multiple sclerosis AIREADI_REDCAP:health_survey.mhoccur_cns Other neurological conditions skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 376337 health_survey radio 1135 mhoccur_cns Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 376337 Disorder of nervous system AIREADI_REDCAP:health_survey.mhoccur_ra Arthritis (joint pain) skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 4291025 health_survey radio 1137 mhoccur_ra Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 4291025 Arthritis @@ -295,7 +295,7 @@ AIREADI_REDCAP:health_survey.mhoccur_plm Chronic pulmonary (lung) problems (Exam AIREADI_REDCAP:health_survey.mhoccur_gi Digestive problems (Examples: stomach ulcer, gastrointestinal problems, hiatal hernia) skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 4201745 health_survey radio 1142 mhoccur_gi Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 4201745 Disorder of digestive system AIREADI_REDCAP:health_survey.mhoccur_ua Urinary problems (Examples: urinary tract infections, incontinence, prostate problems) skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 75865 health_survey radio 1143 mhoccur_ua Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 75865 Disorder of urinary system AIREADI_REDCAP:health_survey.mhoccur_rnl Kidney problems skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 2005200017 health_survey radio 1144 mhoccur_rnl Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 2005200017 Kidney problems -AIREADI_REDCAP:health_survey.mhoccur_ear Hearing impairment skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 439378 health_survey radio 1145 mhoccur_ear Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 439378 Ear anomalies with hearing impairment +AIREADI_REDCAP:health_survey.mhoccur_ear Hearing impairment skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 377889 health_survey radio 1145 mhoccur_ear Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 377889 Hearing loss AIREADI_REDCAP:health_survey.mhoccur_obs Obesity skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 433736 health_survey radio 1146 mhoccur_obs Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 433736 Obesity AIREADI_REDCAP:health_survey.fh_dm2pt Were either of your parents diagnosed with Type II Diabetes? skos:exactMatch OMOP:2005200018 Were either of your parents diagnosed with Type II Diabetes? semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation health_survey radio 1147 fh_dm2pt Question 2005200018 2005200018 Observation AIREADI Survey S Yes open-source Yes AIREADI_REDCAP:health_survey.fh_dm2ptsp If yes, which parent? skos:exactMatch OMOP:2005200463 Was your mother or father diagnosed with Type II Diabetes? semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation health_survey checkbox 1148 fh_dm2ptsp Question 2005200463 2005200463 Observation AIREADI Survey S Yes open-source Yes @@ -303,7 +303,7 @@ AIREADI_REDCAP:health_survey.fh_dm2sb Has a sibling been diagnosed with Type II AIREADI_REDCAP:health_survey.fh_dm2sbsp If yes, please check all that apply: skos:exactMatch OMOP:2005200464 If yes, please check all that apply: brother, sister, half-sister, half-brother semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation health_survey checkbox 1150 fh_dm2sbsp Question 2005200464 2005200464 Observation AIREADI Survey S Yes open-source Yes AIREADI_REDCAP:health_survey.mhoccur_glc Glaucoma (in one or both eyes) skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 437541 health_survey radio 1151 mhoccur_glc Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 437541 Glaucoma AIREADI_REDCAP:health_survey.mhoccur_amd Age-related macular degeneration (AMD) (in one or both eyes) skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 374028 health_survey radio 1152 mhoccur_amd Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 374028 Age related macular degeneration -AIREADI_REDCAP:health_survey.mhoccur_crt Cataracts (in one or both eyes) skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 4317977 health_survey radio 1153 mhoccur_crt Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 4317977 Bilateral cataracts +AIREADI_REDCAP:health_survey.mhoccur_crt Cataracts (in one or both eyes) skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 375545 health_survey radio 1153 mhoccur_crt Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 375545 Cataract AIREADI_REDCAP:health_survey.mhoccur_pdr Diabetic retinopathy (in one or both eyes) skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 4174977 health_survey radio 1154 mhoccur_pdr Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 4174977 Retinopathy due to diabetes mellitus AIREADI_REDCAP:health_survey.mhoccur_rvo "Retinal vascular occlusion (""stroke in the eye or eye vessels"" - in one or both eyes)" skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 440392 health_survey radio 1155 mhoccur_rvo Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 440392 Retinal vascular occlusion AIREADI_REDCAP:health_survey.mhoccur_ded Dry eye (in one or both eyes) skos:exactMatch OMOP:2005200014 Has a doctor or other healthcare professional ever told you that you have/had... semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation 4036620 health_survey radio 1156 mhoccur_ded Question 2005200014 2005200014 Observation AIREADI Survey S Yes open-source Yes 4036620 Dry eyes @@ -318,7 +318,7 @@ AIREADI_REDCAP:current_medications.cmname Medication Name skos:exactMatch OMOP:2 AIREADI_REDCAP:current_medications.cmroute How is it taken? (ex. oral, cream, injection, etc.) skos:closeMatch OMOP:44786711 Dose form - RxNorm RXCUI of Medication semapv:ManualMappingCuration 0.75 AI-READI REDCap LOINC AI-READI manual_curation current_medications dropdown 1471 cmroute Question 44786711 Measurement LOINC Clinical Observation 74054-8 S No protected Yes AIREADI_REDCAP:current_medications.cmdos Amount taken (Dose) skos:closeMatch OMOP:4162374 Drug dose semapv:ManualMappingCuration 1 AI-READI REDCap SNOMED AI-READI manual_curation current_medications text 1473 cmdos Question 4162374 Observation SNOMED Clinical Finding 398232005 S No protected Yes AIREADI_REDCAP:current_medications.cmdosu Unit (Record the dose unit of the dose of concomitant medication/treatment/therapy taken (e.g., mg.)). skos:exactMatch OMOP:2005200221 Unit (Record the dose unit of the dose of concomitant medication/treatment/therapy taken (e.g., mg.)). semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation current_medications dropdown 1474 cmdosu Question 2005200221 2005200221 Observation AIREADI Clinical Observation S Yes protected Yes -AIREADI_REDCAP:current_medications.cmdosfrq Frequency taken or applied: skos:closeMatch OMOP:3042548 Current Medication, Frequency semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation current_medications dropdown 1475 cmdosfrq Question 3042548 Observation LOINC Claims Attachment 52810-9 S No protected Yes +AIREADI_REDCAP:current_medications.cmdosfrq Frequency taken or applied: skos:closeMatch OMOP:3042548 Current medication, Frequency semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation current_medications dropdown 1475 cmdosfrq Question 3042548 Observation LOINC Claims Attachment 52810-9 S No protected Yes AIREADI_REDCAP:current_medications.cmtrt RxNorm (assign after visit) skos:exactMatch OMOP:2005200220 RxNorm (assign after visit) semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation current_medications text 1476 cmtrt Question 2005200220 2005200220 Observation AIREADI Survey S Yes protected Yes AIREADI_REDCAP:health_survey.777.mhoccur_mi_777 Prefer not to say skos:exactMatch OMOP:36311156 Prefer not to say semapv:ManualMappingCuration 1 AI-READI REDCap LOINC AI-READI manual_curation health_survey radio mhoccur_mi 1896 777 mhoccur_mi_777 Answer 36311156 Meas Value LOINC Answer LA28803-7 S No open-source Yes AIREADI_REDCAP:health_survey.1.mhoccur_cvdot_1 Yes skos:exactMatch OMOP:2005200627 Other heart issues (Examples: pacemaker, heart valve disease, open heart surgery) semapv:ManualMappingCuration 1 AI-READI REDCap AIREADI AI-READI manual_curation health_survey radio mhoccur_cvdot 1897 1 mhoccur_cvdot_1 Answer 2005200627 2005200627 Condition AIREADI Disorder S Yes open-source Yes diff --git a/redCapDataDictionaryWithExtension/value-set-mapping-common/_ai_readi_redcap_value_set_mapping_common.csv b/redCapDataDictionaryWithExtension/value-set-mapping-common/_ai_readi_redcap_value_set_mapping_common.csv index 220e69b..76d8ab6 100644 --- a/redCapDataDictionaryWithExtension/value-set-mapping-common/_ai_readi_redcap_value_set_mapping_common.csv +++ b/redCapDataDictionaryWithExtension/value-set-mapping-common/_ai_readi_redcap_value_set_mapping_common.csv @@ -137,7 +137,7 @@ Yes,Yes,open-source,No,device_return,radio,,,Question,dvamwendhand,,Participant' Yes,Yes,open-source,No,device_return,radio,dvamwendhand,,Answer,dvamwendhand_1,,Right hand,45881626,,Right,Meas Value,LOINC,Answer,LA4306-2,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,device_return,radio,dvamwendhand,,Answer,dvamwendhand_2,,Left hand,45883143,,Left,Meas Value,LOINC,Answer,LA4585-1,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,device_return,radio,dvamwendhand,,Answer,dvamwendhand_4,,Neither (ambidextrous),4045863,,Ambidextrous,Observation,SNOMED,Clinical Finding,23088002,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,device_return,radio,dvamwendhand,,Answer,dvamwendhand_3,,Not Provided,763013,,Not Provided,Meas Value,SNOMED,Qualifier Value,434941000124101,S,skos:exactMatch,1,,,, +Yes,Yes,open-source,No,device_return,radio,dvamwendhand,,Answer,dvamwendhand_3,,Not Provided,763013,,Not provided,Meas Value,SNOMED,Qualifier Value,434941000124101,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,diabetes_survey,text,,1221,Question,dmlcmpdat,,Diabetes survey date,4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,Diabetes survey date,,2005200572,Diabetes Survey Yes,Yes,open-source,Yes,diabetes_survey,radio,,1224,Question,dmlvex,,"In a typical week, how often do you engage in vigorous exercise? (Examples: hiking, jogging at 6 mph, shoveling, carrying heavy loads, bicycling fast (14-16 mph), playing basketball, playing soccer, playing tennis, or any activity during which you cannot say more than a few words without taking a breath)",2005200277,2005200277,"In a typical week, how often do you engage in vigorous exercise? (Examples: hiking, jogging at 6 mph, shoveling, carrying heavy loads, bicycling fast (14-16 mph), playing basketball, playing soccer, playing tennis, or any activity during which you cannot say more than a few words without taking a breath)",Observation,AIREADI,Clinical Finding,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,diabetes_survey,radio,,1225,Question,dmlact,,What would you consider your typical activity level to be?,44808782,,Level of physical activity,Observation,SNOMED,Observable Entity,859981000000107,S,skos:closeMatch,1,,,, @@ -298,7 +298,7 @@ Yes,Yes,open-source,Yes,health_survey,radio,,1128,Question,mhoccur_lbp,,Low bloo Yes,Yes,open-source,Yes,health_survey,radio,,1129,Question,mhoccur_pd,,Parkinson's disease,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,381270,,381270,Parkinson's disease Yes,Yes,open-source,Yes,health_survey,radio,,1130,Question,mhoccur_ad,,"Dementia (Examples: Alzheimer's Disease, vascular dementia, etc)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4182210,,4182210,Dementia Yes,Yes,open-source,Yes,health_survey,radio,,1131,Question,mhcat_adot,,"If yes, please choose between:",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,378419,,378419,Alzheimer's disease -Yes,Yes,open-source,Yes,health_survey,radio,,1133,Question,mhoccur_cogn,,"Mild cognitive impairment (known as ""MCI""; mild but noticeable cognitive changes, may slow or interfere with daily activities but does not stop them)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,439795,,439795,Minimal cognitive impairment +Yes,Yes,open-source,Yes,health_survey,radio,,1133,Question,mhoccur_cogn,,"Mild cognitive impairment (known as ""MCI""; mild but noticeable cognitive changes, may slow or interfere with daily activities but does not stop them)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4297400,,4297400,Mild neurocognitive disorder Yes,Yes,open-source,Yes,health_survey,radio,,1134,Question,mhoccur_ms,,Multiple sclerosis,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,374919,,374919,Multiple sclerosis Yes,Yes,open-source,Yes,health_survey,radio,,1135,Question,mhoccur_cns,,Other neurological conditions,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,376337,,376337,Disorder of nervous system Yes,Yes,open-source,Yes,health_survey,radio,,1137,Question,mhoccur_ra,,Arthritis (joint pain),2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4291025,,4291025,Arthritis @@ -308,7 +308,7 @@ Yes,Yes,open-source,Yes,health_survey,radio,,1141,Question,mhoccur_plm,,"Chronic Yes,Yes,open-source,Yes,health_survey,radio,,1142,Question,mhoccur_gi,,"Digestive problems (Examples: stomach ulcer, gastrointestinal problems, hiatal hernia)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4201745,,4201745,Disorder of digestive system Yes,Yes,open-source,Yes,health_survey,radio,,1143,Question,mhoccur_ua,,"Urinary problems (Examples: urinary tract infections, incontinence, prostate problems)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,75865,,75865,Disorder of urinary system Yes,Yes,open-source,Yes,health_survey,radio,,1144,Question,mhoccur_rnl,,Kidney problems,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,2005200017,,2005200017,Kidney problems -Yes,Yes,open-source,Yes,health_survey,radio,,1145,Question,mhoccur_ear,,Hearing impairment,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,439378,,439378,Ear anomalies with hearing impairment +Yes,Yes,open-source,Yes,health_survey,radio,,1145,Question,mhoccur_ear,,Hearing impairment,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,377889,,377889,Hearing loss Yes,Yes,open-source,Yes,health_survey,radio,,1146,Question,mhoccur_obs,,Obesity,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,433736,,433736,Obesity Yes,Yes,open-source,Yes,health_survey,radio,,1147,Question,fh_dm2pt,,Were either of your parents diagnosed with Type II Diabetes?,2005200018,2005200018,Were either of your parents diagnosed with Type II Diabetes?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,health_survey,checkbox,,1148,Question,fh_dm2ptsp,,"If yes, which parent?",2005200463,2005200463,Was your mother or father diagnosed with Type II Diabetes?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, @@ -316,7 +316,7 @@ Yes,Yes,open-source,Yes,health_survey,radio,,1149,Question,fh_dm2sb,,Has a sibli Yes,Yes,open-source,Yes,health_survey,checkbox,,1150,Question,fh_dm2sbsp,,"If yes, please check all that apply:",2005200464,2005200464,"If yes, please check all that apply: brother, sister, half-sister, half-brother",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,health_survey,radio,,1151,Question,mhoccur_glc,,Glaucoma (in one or both eyes),2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,437541,,437541,Glaucoma Yes,Yes,open-source,Yes,health_survey,radio,,1152,Question,mhoccur_amd,,Age-related macular degeneration (AMD) (in one or both eyes),2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,374028,,374028,Age related macular degeneration -Yes,Yes,open-source,Yes,health_survey,radio,,1153,Question,mhoccur_crt,,Cataracts (in one or both eyes),2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4317977,,4317977,Bilateral cataracts +Yes,Yes,open-source,Yes,health_survey,radio,,1153,Question,mhoccur_crt,,Cataracts (in one or both eyes),2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,375545,,375545,Cataract Yes,Yes,open-source,Yes,health_survey,radio,,1154,Question,mhoccur_pdr,,Diabetic retinopathy (in one or both eyes),2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4174977,,4174977,Retinopathy due to diabetes mellitus Yes,Yes,open-source,Yes,health_survey,radio,,1155,Question,mhoccur_rvo,,"Retinal vascular occlusion (""stroke in the eye or eye vessels"" - in one or both eyes)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,440392,,440392,Retinal vascular occlusion Yes,Yes,open-source,Yes,health_survey,radio,,1156,Question,mhoccur_ded,,Dry eye (in one or both eyes),2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4036620,,4036620,Dry eyes @@ -331,7 +331,7 @@ Yes,Yes,protected,Yes,current_medications,text,,1470,Question,cmname,,Medication Yes,Yes,protected,No,current_medications,dropdown,,1471,Question,cmroute,,"How is it taken? (ex. oral, cream, injection, etc.)",44786711,,Dose form - RxNorm RXCUI of Medication,Measurement,LOINC,Clinical Observation,74054-8,S,skos:closeMatch,0.75,,,, Yes,Yes,protected,No,current_medications,text,,1473,Question,cmdos,,Amount taken (Dose),4162374,,Drug dose,Observation,SNOMED,Clinical Finding,398232005,S,skos:closeMatch,1,,,, Yes,Yes,protected,Yes,current_medications,dropdown,,1474,Question,cmdosu,,"Unit (Record the dose unit of the dose of concomitant medication/treatment/therapy taken (e.g., mg.)).",2005200221,2005200221,"Unit (Record the dose unit of the dose of concomitant medication/treatment/therapy taken (e.g., mg.)).",Observation,AIREADI,Clinical Observation,,S,skos:exactMatch,1,,,, -Yes,Yes,protected,No,current_medications,dropdown,,1475,Question,cmdosfrq,,Frequency taken or applied:,3042548,,"Current Medication, Frequency",Observation,LOINC,Claims Attachment,52810-9,S,skos:closeMatch,1,,,, +Yes,Yes,protected,No,current_medications,dropdown,,1475,Question,cmdosfrq,,Frequency taken or applied:,3042548,,"Current medication, Frequency",Observation,LOINC,Claims Attachment,52810-9,S,skos:closeMatch,1,,,, Yes,Yes,protected,Yes,current_medications,text,,1476,Question,cmtrt,,RxNorm (assign after visit),2005200220,2005200220,RxNorm (assign after visit),Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_mi,1896,Answer,777,mhoccur_mi_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,health_survey,radio,mhoccur_cvdot,1897,Answer,1,mhoccur_cvdot_1,Yes,2005200627,2005200627,"Other heart issues (Examples: pacemaker, heart valve disease, open heart surgery)",Condition,AIREADI,Disorder,,S,skos:exactMatch,1,,,, diff --git a/redCapDataDictionaryWithExtension/value-set-mapping-common/_ai_readi_redcap_value_set_mapping_common_map2omop.csv b/redCapDataDictionaryWithExtension/value-set-mapping-common/_ai_readi_redcap_value_set_mapping_common_map2omop.csv index 5d583cb..84f7bd6 100644 --- a/redCapDataDictionaryWithExtension/value-set-mapping-common/_ai_readi_redcap_value_set_mapping_common_map2omop.csv +++ b/redCapDataDictionaryWithExtension/value-set-mapping-common/_ai_readi_redcap_value_set_mapping_common_map2omop.csv @@ -137,7 +137,7 @@ Yes,Yes,open-source,No,device_return,radio,,,Question,dvamwendhand,,Participant' Yes,Yes,open-source,No,device_return,radio,dvamwendhand,,Answer,dvamwendhand_1,,Right hand,45881626,,Right,Meas Value,LOINC,Answer,LA4306-2,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,device_return,radio,dvamwendhand,,Answer,dvamwendhand_2,,Left hand,45883143,,Left,Meas Value,LOINC,Answer,LA4585-1,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,device_return,radio,dvamwendhand,,Answer,dvamwendhand_4,,Neither (ambidextrous),4045863,,Ambidextrous,Observation,SNOMED,Clinical Finding,23088002,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,device_return,radio,dvamwendhand,,Answer,dvamwendhand_3,,Not Provided,763013,,Not Provided,Meas Value,SNOMED,Qualifier Value,434941000124101,S,skos:exactMatch,1,,,, +Yes,Yes,open-source,No,device_return,radio,dvamwendhand,,Answer,dvamwendhand_3,,Not Provided,763013,,Not provided,Meas Value,SNOMED,Qualifier Value,434941000124101,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,diabetes_survey,text,,1221,Question,dmlcmpdat,,Diabetes survey date,4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,Diabetes survey date,,2005200572,Diabetes Survey Yes,Yes,open-source,Yes,diabetes_survey,radio,,1224,Question,dmlvex,,"In a typical week, how often do you engage in vigorous exercise? (Examples: hiking, jogging at 6 mph, shoveling, carrying heavy loads, bicycling fast (14-16 mph), playing basketball, playing soccer, playing tennis, or any activity during which you cannot say more than a few words without taking a breath)",2005200277,2005200277,"In a typical week, how often do you engage in vigorous exercise? (Examples: hiking, jogging at 6 mph, shoveling, carrying heavy loads, bicycling fast (14-16 mph), playing basketball, playing soccer, playing tennis, or any activity during which you cannot say more than a few words without taking a breath)",Observation,AIREADI,Clinical Finding,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,diabetes_survey,radio,,1225,Question,dmlact,,What would you consider your typical activity level to be?,44808782,,Level of physical activity,Observation,SNOMED,Observable Entity,859981000000107,S,skos:closeMatch,1,,,, @@ -298,7 +298,7 @@ Yes,Yes,open-source,Yes,health_survey,radio,,1128,Question,mhoccur_lbp,,Low bloo Yes,Yes,open-source,Yes,health_survey,radio,,1129,Question,mhoccur_pd,,Parkinson's disease,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,381270,,381270,Parkinson's disease Yes,Yes,open-source,Yes,health_survey,radio,,1130,Question,mhoccur_ad,,"Dementia (Examples: Alzheimer's Disease, vascular dementia, etc)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4182210,,4182210,Dementia Yes,Yes,open-source,Yes,health_survey,radio,,1131,Question,mhcat_adot,,"If yes, please choose between:",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,378419,,378419,Alzheimer's disease -Yes,Yes,open-source,Yes,health_survey,radio,,1133,Question,mhoccur_cogn,,"Mild cognitive impairment (known as ""MCI""; mild but noticeable cognitive changes, may slow or interfere with daily activities but does not stop them)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,439795,,439795,Minimal cognitive impairment +Yes,Yes,open-source,Yes,health_survey,radio,,1133,Question,mhoccur_cogn,,"Mild cognitive impairment (known as ""MCI""; mild but noticeable cognitive changes, may slow or interfere with daily activities but does not stop them)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4297400,,4297400,Mild neurocognitive disorder Yes,Yes,open-source,Yes,health_survey,radio,,1134,Question,mhoccur_ms,,Multiple sclerosis,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,374919,,374919,Multiple sclerosis Yes,Yes,open-source,Yes,health_survey,radio,,1135,Question,mhoccur_cns,,Other neurological conditions,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,376337,,376337,Disorder of nervous system Yes,Yes,open-source,Yes,health_survey,radio,,1137,Question,mhoccur_ra,,Arthritis (joint pain),2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4291025,,4291025,Arthritis @@ -308,7 +308,7 @@ Yes,Yes,open-source,Yes,health_survey,radio,,1141,Question,mhoccur_plm,,"Chronic Yes,Yes,open-source,Yes,health_survey,radio,,1142,Question,mhoccur_gi,,"Digestive problems (Examples: stomach ulcer, gastrointestinal problems, hiatal hernia)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4201745,,4201745,Disorder of digestive system Yes,Yes,open-source,Yes,health_survey,radio,,1143,Question,mhoccur_ua,,"Urinary problems (Examples: urinary tract infections, incontinence, prostate problems)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,75865,,75865,Disorder of urinary system Yes,Yes,open-source,Yes,health_survey,radio,,1144,Question,mhoccur_rnl,,Kidney problems,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,2005200017,,2005200017,Kidney problems -Yes,Yes,open-source,Yes,health_survey,radio,,1145,Question,mhoccur_ear,,Hearing impairment,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,439378,,439378,Ear anomalies with hearing impairment +Yes,Yes,open-source,Yes,health_survey,radio,,1145,Question,mhoccur_ear,,Hearing impairment,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,377889,,377889,Hearing loss Yes,Yes,open-source,Yes,health_survey,radio,,1146,Question,mhoccur_obs,,Obesity,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,433736,,433736,Obesity Yes,Yes,open-source,Yes,health_survey,radio,,1147,Question,fh_dm2pt,,Were either of your parents diagnosed with Type II Diabetes?,2005200018,2005200018,Were either of your parents diagnosed with Type II Diabetes?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,health_survey,checkbox,,1148,Question,fh_dm2ptsp,,"If yes, which parent?",2005200463,2005200463,Was your mother or father diagnosed with Type II Diabetes?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, @@ -316,7 +316,7 @@ Yes,Yes,open-source,Yes,health_survey,radio,,1149,Question,fh_dm2sb,,Has a sibli Yes,Yes,open-source,Yes,health_survey,checkbox,,1150,Question,fh_dm2sbsp,,"If yes, please check all that apply:",2005200464,2005200464,"If yes, please check all that apply: brother, sister, half-sister, half-brother",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,health_survey,radio,,1151,Question,mhoccur_glc,,Glaucoma (in one or both eyes),2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,437541,,437541,Glaucoma Yes,Yes,open-source,Yes,health_survey,radio,,1152,Question,mhoccur_amd,,Age-related macular degeneration (AMD) (in one or both eyes),2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,374028,,374028,Age related macular degeneration -Yes,Yes,open-source,Yes,health_survey,radio,,1153,Question,mhoccur_crt,,Cataracts (in one or both eyes),2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4317977,,4317977,Bilateral cataracts +Yes,Yes,open-source,Yes,health_survey,radio,,1153,Question,mhoccur_crt,,Cataracts (in one or both eyes),2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,375545,,375545,Cataract Yes,Yes,open-source,Yes,health_survey,radio,,1154,Question,mhoccur_pdr,,Diabetic retinopathy (in one or both eyes),2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4174977,,4174977,Retinopathy due to diabetes mellitus Yes,Yes,open-source,Yes,health_survey,radio,,1155,Question,mhoccur_rvo,,"Retinal vascular occlusion (""stroke in the eye or eye vessels"" - in one or both eyes)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,440392,,440392,Retinal vascular occlusion Yes,Yes,open-source,Yes,health_survey,radio,,1156,Question,mhoccur_ded,,Dry eye (in one or both eyes),2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4036620,,4036620,Dry eyes @@ -331,7 +331,7 @@ Yes,Yes,protected,Yes,current_medications,text,,1470,Question,cmname,,Medication Yes,Yes,protected,No,current_medications,dropdown,,1471,Question,cmroute,,"How is it taken? (ex. oral, cream, injection, etc.)",44786711,,Dose form - RxNorm RXCUI of Medication,Measurement,LOINC,Clinical Observation,74054-8,S,skos:closeMatch,0.75,,,, Yes,Yes,protected,No,current_medications,text,,1473,Question,cmdos,,Amount taken (Dose),4162374,,Drug dose,Observation,SNOMED,Clinical Finding,398232005,S,skos:closeMatch,1,,,, Yes,Yes,protected,Yes,current_medications,dropdown,,1474,Question,cmdosu,,"Unit (Record the dose unit of the dose of concomitant medication/treatment/therapy taken (e.g., mg.)).",2005200221,2005200221,"Unit (Record the dose unit of the dose of concomitant medication/treatment/therapy taken (e.g., mg.)).",Observation,AIREADI,Clinical Observation,,S,skos:exactMatch,1,,,, -Yes,Yes,protected,No,current_medications,dropdown,,1475,Question,cmdosfrq,,Frequency taken or applied:,3042548,,"Current Medication, Frequency",Observation,LOINC,Claims Attachment,52810-9,S,skos:closeMatch,1,,,, +Yes,Yes,protected,No,current_medications,dropdown,,1475,Question,cmdosfrq,,Frequency taken or applied:,3042548,,"Current medication, Frequency",Observation,LOINC,Claims Attachment,52810-9,S,skos:closeMatch,1,,,, Yes,Yes,protected,Yes,current_medications,text,,1476,Question,cmtrt,,RxNorm (assign after visit),2005200220,2005200220,RxNorm (assign after visit),Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,health_survey,radio,mhoccur_mi,1896,Answer,777,mhoccur_mi_777,Prefer not to say,36311156,,Prefer not to say,Meas Value,LOINC,Answer,LA28803-7,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,health_survey,radio,mhoccur_cvdot,1897,Answer,1,mhoccur_cvdot_1,Yes,2005200627,2005200627,"Other heart issues (Examples: pacemaker, heart valve disease, open heart surgery)",Condition,AIREADI,Disorder,,S,skos:exactMatch,1,,,, diff --git a/redCapDataDictionaryWithExtension/value-set-mapping-common/_ai_readi_redcap_value_set_mapping_map2omop_open_source_public_version.csv b/redCapDataDictionaryWithExtension/value-set-mapping-common/_ai_readi_redcap_value_set_mapping_map2omop_open_source_public_version.csv index 36e8631..daea3da 100644 --- a/redCapDataDictionaryWithExtension/value-set-mapping-common/_ai_readi_redcap_value_set_mapping_map2omop_open_source_public_version.csv +++ b/redCapDataDictionaryWithExtension/value-set-mapping-common/_ai_readi_redcap_value_set_mapping_map2omop_open_source_public_version.csv @@ -122,7 +122,7 @@ Yes,Yes,open-source,No,device_return,radio,,,Question,dvamwendhand,,Participant' Yes,Yes,open-source,No,device_return,radio,dvamwendhand,,Answer,dvamwendhand_1,,Right hand,45881626,,Right,Meas Value,LOINC,Answer,LA4306-2,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,device_return,radio,dvamwendhand,,Answer,dvamwendhand_2,,Left hand,45883143,,Left,Meas Value,LOINC,Answer,LA4585-1,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,device_return,radio,dvamwendhand,,Answer,dvamwendhand_4,,Neither (ambidextrous),4045863,,Ambidextrous,Observation,SNOMED,Clinical Finding,23088002,S,skos:exactMatch,1,,,, -Yes,Yes,open-source,No,device_return,radio,dvamwendhand,,Answer,dvamwendhand_3,,Not Provided,763013,,Not Provided,Meas Value,SNOMED,Qualifier Value,434941000124101,S,skos:exactMatch,1,,,, +Yes,Yes,open-source,No,device_return,radio,dvamwendhand,,Answer,dvamwendhand_3,,Not Provided,763013,,Not provided,Meas Value,SNOMED,Qualifier Value,434941000124101,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,diabetes_survey,text,,1221,Question,dmlcmpdat,,Diabetes survey date,4160030,,Performed,Observation,SNOMED,Qualifier Value,398166005,S,skos:closeMatch,0.75,Diabetes survey date,,2005200572,Diabetes Survey Yes,Yes,open-source,Yes,diabetes_survey,radio,,1224,Question,dmlvex,,"In a typical week, how often do you engage in vigorous exercise? (Examples: hiking, jogging at 6 mph, shoveling, carrying heavy loads, bicycling fast (14-16 mph), playing basketball, playing soccer, playing tennis, or any activity during which you cannot say more than a few words without taking a breath)",2005200277,2005200277,"In a typical week, how often do you engage in vigorous exercise? (Examples: hiking, jogging at 6 mph, shoveling, carrying heavy loads, bicycling fast (14-16 mph), playing basketball, playing soccer, playing tennis, or any activity during which you cannot say more than a few words without taking a breath)",Observation,AIREADI,Clinical Finding,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,No,diabetes_survey,radio,,1225,Question,dmlact,,What would you consider your typical activity level to be?,44808782,,Level of physical activity,Observation,SNOMED,Observable Entity,859981000000107,S,skos:closeMatch,1,,,, @@ -281,7 +281,7 @@ Yes,Yes,open-source,Yes,health_survey,radio,,1128,Question,mhoccur_lbp,,Low bloo Yes,Yes,open-source,Yes,health_survey,radio,,1129,Question,mhoccur_pd,,Parkinson's disease,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,381270,,381270,Parkinson's disease Yes,Yes,open-source,Yes,health_survey,radio,,1130,Question,mhoccur_ad,,"Dementia (Examples: Alzheimer's Disease, vascular dementia, etc)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4182210,,4182210,Dementia Yes,Yes,open-source,Yes,health_survey,radio,,1131,Question,mhcat_adot,,"If yes, please choose between:",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,378419,,378419,Alzheimer's disease -Yes,Yes,open-source,Yes,health_survey,radio,,1133,Question,mhoccur_cogn,,"Mild cognitive impairment (known as ""MCI""; mild but noticeable cognitive changes, may slow or interfere with daily activities but does not stop them)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,439795,,439795,Minimal cognitive impairment +Yes,Yes,open-source,Yes,health_survey,radio,,1133,Question,mhoccur_cogn,,"Mild cognitive impairment (known as ""MCI""; mild but noticeable cognitive changes, may slow or interfere with daily activities but does not stop them)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4297400,,4297400,Mild neurocognitive disorder Yes,Yes,open-source,Yes,health_survey,radio,,1134,Question,mhoccur_ms,,Multiple sclerosis,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,374919,,374919,Multiple sclerosis Yes,Yes,open-source,Yes,health_survey,radio,,1135,Question,mhoccur_cns,,Other neurological conditions,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,376337,,376337,Disorder of nervous system Yes,Yes,open-source,Yes,health_survey,radio,,1137,Question,mhoccur_ra,,Arthritis (joint pain),2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4291025,,4291025,Arthritis @@ -291,7 +291,7 @@ Yes,Yes,open-source,Yes,health_survey,radio,,1141,Question,mhoccur_plm,,"Chronic Yes,Yes,open-source,Yes,health_survey,radio,,1142,Question,mhoccur_gi,,"Digestive problems (Examples: stomach ulcer, gastrointestinal problems, hiatal hernia)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4201745,,4201745,Disorder of digestive system Yes,Yes,open-source,Yes,health_survey,radio,,1143,Question,mhoccur_ua,,"Urinary problems (Examples: urinary tract infections, incontinence, prostate problems)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,75865,,75865,Disorder of urinary system Yes,Yes,open-source,Yes,health_survey,radio,,1144,Question,mhoccur_rnl,,Kidney problems,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,2005200017,,2005200017,Kidney problems -Yes,Yes,open-source,Yes,health_survey,radio,,1145,Question,mhoccur_ear,,Hearing impairment,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,439378,,439378,Ear anomalies with hearing impairment +Yes,Yes,open-source,Yes,health_survey,radio,,1145,Question,mhoccur_ear,,Hearing impairment,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,377889,,377889,Hearing loss Yes,Yes,open-source,Yes,health_survey,radio,,1146,Question,mhoccur_obs,,Obesity,2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,433736,,433736,Obesity Yes,Yes,open-source,Yes,health_survey,radio,,1147,Question,fh_dm2pt,,Were either of your parents diagnosed with Type II Diabetes?,2005200018,2005200018,Were either of your parents diagnosed with Type II Diabetes?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,health_survey,checkbox,,1148,Question,fh_dm2ptsp,,"If yes, which parent?",2005200463,2005200463,Was your mother or father diagnosed with Type II Diabetes?,Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, @@ -299,7 +299,7 @@ Yes,Yes,open-source,Yes,health_survey,radio,,1149,Question,fh_dm2sb,,Has a sibli Yes,Yes,open-source,Yes,health_survey,checkbox,,1150,Question,fh_dm2sbsp,,"If yes, please check all that apply:",2005200464,2005200464,"If yes, please check all that apply: brother, sister, half-sister, half-brother",Observation,AIREADI,Survey,,S,skos:exactMatch,1,,,, Yes,Yes,open-source,Yes,health_survey,radio,,1151,Question,mhoccur_glc,,Glaucoma (in one or both eyes),2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,437541,,437541,Glaucoma Yes,Yes,open-source,Yes,health_survey,radio,,1152,Question,mhoccur_amd,,Age-related macular degeneration (AMD) (in one or both eyes),2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,374028,,374028,Age related macular degeneration -Yes,Yes,open-source,Yes,health_survey,radio,,1153,Question,mhoccur_crt,,Cataracts (in one or both eyes),2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4317977,,4317977,Bilateral cataracts +Yes,Yes,open-source,Yes,health_survey,radio,,1153,Question,mhoccur_crt,,Cataracts (in one or both eyes),2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,375545,,375545,Cataract Yes,Yes,open-source,Yes,health_survey,radio,,1154,Question,mhoccur_pdr,,Diabetic retinopathy (in one or both eyes),2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4174977,,4174977,Retinopathy due to diabetes mellitus Yes,Yes,open-source,Yes,health_survey,radio,,1155,Question,mhoccur_rvo,,"Retinal vascular occlusion (""stroke in the eye or eye vessels"" - in one or both eyes)",2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,440392,,440392,Retinal vascular occlusion Yes,Yes,open-source,Yes,health_survey,radio,,1156,Question,mhoccur_ded,,Dry eye (in one or both eyes),2005200014,2005200014,Has a doctor or other healthcare professional ever told you that you have/had...,Observation,AIREADI,Survey,,S,skos:exactMatch,1,4036620,,4036620,Dry eyes